Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36763 * 125.80405 * 2 1 4 4 C 1.47269 * 126.94245 * 0.02562 * 3 2 1 5 5 O 1.21623 * 119.99615 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00394 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00237 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46998 * 180.02562 * 7 6 4 9 9 O 1.42903 * 110.63860 * 66.68903 * 8 7 6 10 10 C 1.55163 * 110.71776 * 190.02094 * 8 7 6 11 11 C 1.54907 * 101.57736 * 153.86275 * 10 8 7 12 12 N 1.47419 * 104.83507 * 322.99305 * 11 10 8 13 13 C 1.36940 * 125.64886 * 204.16172 * 12 11 10 14 14 H 1.07996 * 120.00387 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99833 * 359.96123 * 13 12 11 16 16 N 1.31620 * 120.00267 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47505 * 59.99981 * 17 15 13 19 19 H 1.48506 * 109.47224 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46987 * 299.99715 * 17 15 13 21 21 C 1.47017 * 108.70543 * 24.12815 * 12 11 10 22 22 C 1.46683 * 106.11965 * 180.28594 * 3 2 1 23 23 C 1.34487 * 106.33194 * 359.56823 * 22 3 2 24 24 N 1.34666 * 125.80053 * 180.02562 * 2 1 3 25 25 C 1.46497 * 124.85054 * 359.97438 * 24 2 1 26 26 C 1.52997 * 109.46755 * 120.00278 * 25 24 2 27 27 C 1.52995 * 109.47164 * 240.00417 * 25 24 2 28 28 H 1.08996 * 109.47899 * 89.97543 * 1 2 3 29 29 H 1.09007 * 109.47156 * 209.97524 * 1 2 3 30 30 H 1.09000 * 109.46942 * 329.97291 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 6 4 3 32 32 H 1.08993 * 109.47452 * 60.00368 * 7 6 4 33 33 H 1.09000 * 109.47175 * 300.00158 * 7 6 4 34 34 H 0.96695 * 114.00286 * 300.69612 * 9 8 7 35 35 H 1.08999 * 111.00623 * 271.94003 * 10 8 7 36 36 H 1.09000 * 111.00045 * 35.79396 * 10 8 7 37 37 H 1.09001 * 110.36318 * 204.15216 * 11 10 8 38 38 H 1.09000 * 110.36707 * 81.83205 * 11 10 8 39 39 H 0.97001 * 120.00327 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.88349 * 239.52192 * 21 12 11 41 41 H 1.09008 * 109.88383 * 118.35396 * 21 12 11 42 42 H 1.08007 * 126.83943 * 179.73656 * 22 3 2 43 43 H 1.07999 * 125.57719 * 180.14776 * 23 22 3 44 44 H 1.09000 * 109.47327 * 0.02562 * 25 24 2 45 45 H 1.09006 * 109.47193 * 60.00441 * 26 25 24 46 46 H 1.08998 * 109.47413 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.47718 * 300.00248 * 26 25 24 48 48 H 1.08992 * 109.47412 * 60.00621 * 27 25 24 49 49 H 1.09006 * 109.46577 * 180.02562 * 27 25 24 50 50 H 1.08998 * 109.47474 * 299.99590 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0015 6 7 2.7849 3.5054 0.0010 7 6 2.3503 4.9044 0.0021 8 6 3.5767 5.8194 0.0017 9 8 4.2960 5.6971 -1.2270 10 6 3.1622 7.2929 0.2554 11 6 4.4543 7.8762 0.8799 12 7 4.9926 6.7892 1.7178 13 6 5.8209 6.9485 2.7965 14 1 6.1617 6.0847 3.3479 15 6 6.2228 8.2203 3.1811 16 7 5.8081 9.2731 2.5087 17 14 7.3534 8.4376 4.6522 18 1 8.6286 7.7172 4.4072 19 1 7.6314 9.8824 4.8538 20 1 6.6984 7.8861 5.8655 21 6 4.4921 5.5059 1.2039 22 6 3.6881 0.6151 -0.0070 23 6 3.6095 -0.7275 -0.0009 24 7 2.2947 -1.0922 -0.0005 25 6 1.8093 -2.4744 -0.0006 26 6 2.3205 -3.1943 -1.2501 27 6 2.3212 -3.1948 1.2484 28 1 -0.3635 0.0004 -1.0276 29 1 -0.3634 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 3.7311 3.2914 0.0006 32 1 1.7522 5.0984 0.8923 33 1 1.7516 5.0996 -0.8876 34 1 4.6106 4.8015 -1.4111 35 1 2.9184 7.7968 -0.6799 36 1 2.3295 7.3494 0.9565 37 1 4.2200 8.7469 1.4924 38 1 5.1669 8.1415 0.0989 39 1 6.0893 10.1618 2.7772 40 1 3.9232 4.9927 1.9792 41 1 5.3276 4.8844 0.8815 42 1 4.5890 1.2109 -0.0129 43 1 4.4497 -1.4061 -0.0013 44 1 0.7193 -2.4768 -0.0006 45 1 3.4105 -3.1920 -1.2504 46 1 1.9590 -4.2226 -1.2505 47 1 1.9558 -2.6811 -2.1400 48 1 1.9570 -2.6820 2.1385 49 1 1.9604 -4.2234 1.2480 50 1 3.4112 -3.1926 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484238467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -39.678077 kcal Electronic energy + Delta-G solvation = -29384.787883 eV Core-core repulsion = 25412.446672 eV Total energy + Delta-G solvation = -3972.341210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.43465 -40.80747 -39.57524 -36.78761 -36.13870 -35.28496 -33.97296 -32.55743 -31.54820 -30.87114 -29.54614 -28.19372 -27.70241 -27.06959 -25.37381 -23.48758 -23.11321 -22.17148 -21.31453 -20.75642 -19.59270 -18.91079 -18.52090 -17.83184 -16.96486 -16.75467 -16.72584 -16.48766 -15.98409 -15.68799 -15.47939 -15.42063 -14.87533 -14.75440 -14.50021 -14.35592 -14.06690 -13.98683 -13.87304 -13.64927 -13.51201 -13.37896 -13.28271 -13.03939 -12.95359 -12.91998 -12.72930 -12.43370 -12.36342 -12.20116 -12.09481 -12.03819 -11.96280 -11.76749 -11.59680 -10.96561 -10.80965 -10.72672 -10.14482 -9.50561 -9.07063 -8.90585 -7.77053 -5.22318 0.76836 1.46753 1.50489 1.54146 1.56875 1.81324 2.38049 2.49697 2.59990 3.16690 3.32485 3.46032 3.63992 3.72744 3.79691 3.93238 3.95507 3.97725 4.01674 4.08621 4.20133 4.36769 4.50859 4.55625 4.60745 4.66532 4.69441 4.69987 4.80487 4.81789 4.82571 4.86942 4.95975 4.98461 4.99612 5.06878 5.08877 5.24211 5.24360 5.28472 5.44126 5.46129 5.61460 5.79590 5.83296 6.15197 6.29196 6.39821 6.63042 6.78634 7.09552 7.33955 7.76495 8.40784 9.24933 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002447 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.587701 B =11438.252304 C =12392.440393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.098 3.902 3 C -0.270 4.270 4 C 0.587 3.413 5 O -0.589 6.589 6 N -0.716 5.716 7 C 0.122 3.878 8 C 0.126 3.874 9 O -0.554 6.554 10 C -0.120 4.120 11 C 0.160 3.840 12 N -0.622 5.622 13 C -0.241 4.241 14 H 0.082 0.918 15 C -0.068 4.068 16 N -0.949 5.949 17 Si 0.983 3.017 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.276 1.276 21 C 0.115 3.885 22 C -0.183 4.183 23 C -0.005 4.005 24 N -0.430 5.430 25 C 0.113 3.887 26 C -0.158 4.158 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.407 0.593 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.076 0.924 38 H -0.015 1.015 39 H 0.248 0.752 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.155 0.845 43 H 0.193 0.807 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.097 0.903 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -28.978 -7.643 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.280 4.280 4 C 0.379 3.621 5 O -0.472 6.472 6 N -0.368 5.368 7 C -0.003 4.003 8 C 0.084 3.916 9 O -0.361 6.361 10 C -0.159 4.159 11 C 0.035 3.965 12 N -0.348 5.348 13 C -0.370 4.370 14 H 0.100 0.900 15 C -0.261 4.261 16 N -0.599 5.599 17 Si 0.811 3.189 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.202 1.202 21 C -0.011 4.011 22 C -0.206 4.206 23 C -0.132 4.132 24 N -0.106 5.106 25 C 0.012 3.988 26 C -0.215 4.215 27 C -0.217 4.217 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.243 0.757 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.004 0.996 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.172 0.828 43 H 0.210 0.790 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.115 0.885 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.267 -28.353 -7.563 30.773 hybrid contribution 1.402 0.175 0.764 1.606 sum -7.865 -28.178 -6.799 30.035 Atomic orbital electron populations 1.20518 0.86706 1.03974 1.03553 1.20483 0.94339 0.85688 1.01551 1.20122 0.94947 0.91009 1.21894 1.17726 0.84795 0.85068 0.74555 1.90689 1.17999 1.85135 1.53332 1.45638 1.10246 1.05211 1.75659 1.21733 0.95876 0.79976 1.02667 1.22194 0.89750 0.95914 0.83695 1.86571 1.75048 1.35521 1.38970 1.22912 0.98804 0.92938 1.01244 1.21660 0.90318 0.92779 0.91722 1.44694 1.56047 1.01877 1.32210 1.19425 1.20621 0.93075 1.03905 0.90003 1.25683 1.02719 0.95205 1.02464 1.70045 1.49567 0.97734 1.42532 0.85086 0.78587 0.76325 0.78910 1.20348 1.21939 1.20201 1.22083 0.95495 0.88999 0.94528 1.22222 0.95181 0.94602 1.08638 1.21988 0.86404 0.95869 1.08905 1.44102 1.05646 1.06177 1.54660 1.21835 1.01140 0.77630 0.98199 1.22150 1.02517 1.01523 0.95334 1.22164 1.02536 1.01575 0.95437 0.90119 0.89511 0.90566 0.75658 0.91418 0.90484 0.76638 0.89512 0.89585 0.90591 0.99649 0.94253 0.94827 0.94795 0.82753 0.79013 0.87329 0.91339 0.88505 0.92777 0.92985 0.88454 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.34 71.23 0.67 -1.04 16 2 C 0.10 2.12 6.89 41.78 0.29 2.41 16 3 C -0.27 -6.92 6.29 -19.04 -0.12 -7.04 16 4 C 0.59 18.02 7.81 86.62 0.68 18.70 16 5 O -0.59 -21.45 14.81 -4.10 -0.06 -21.51 16 6 N -0.72 -19.90 5.13 -466.53 -2.39 -22.29 16 7 C 0.12 3.78 4.80 86.38 0.41 4.20 16 8 C 0.13 4.43 0.93 -9.60 -0.01 4.42 16 9 O -0.55 -18.58 13.10 -148.98 -1.95 -20.53 16 10 C -0.12 -4.77 6.26 31.99 0.20 -4.57 16 11 C 0.16 8.30 5.88 86.86 0.51 8.81 16 12 N -0.62 -32.90 3.39 -692.01 -2.35 -35.25 16 13 C -0.24 -13.79 10.27 84.03 0.86 -12.93 16 14 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 16 N -0.95 -57.81 10.09 21.65 0.22 -57.60 16 17 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.11 4.72 5.76 86.73 0.50 5.22 16 22 C -0.18 -3.69 10.56 23.62 0.25 -3.44 16 23 C -0.01 -0.08 10.17 83.12 0.85 0.76 16 24 N -0.43 -6.68 2.57 -487.60 -1.25 -7.93 16 25 C 0.11 0.95 3.45 44.99 0.16 1.11 16 26 C -0.16 -0.90 9.22 71.98 0.66 -0.24 16 27 C -0.16 -1.01 9.23 71.98 0.66 -0.35 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.10 6.96 -2.38 -0.02 1.08 16 30 H 0.08 1.88 6.47 -2.39 -0.02 1.86 16 31 H 0.41 9.71 6.59 -92.70 -0.61 9.10 16 32 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 34 H 0.38 9.53 8.44 -74.06 -0.62 8.91 16 35 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.09 3.23 7.96 -2.39 -0.02 3.21 16 37 H 0.08 4.42 5.87 -2.39 -0.01 4.40 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.03 1.39 7.82 -2.39 -0.02 1.37 16 41 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 42 H 0.15 2.63 7.70 -2.91 -0.02 2.60 16 43 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.11 0.75 6.47 -2.39 -0.02 0.73 16 45 H 0.07 0.38 7.88 -2.38 -0.02 0.36 16 46 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 48 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 50 H 0.07 0.43 7.88 -2.39 -0.02 0.41 16 Total: -1.00 -77.16 397.79 0.99 -76.17 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.29 Total: 28.09 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 7.03 Total: 12.56 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.77 Total: -123.07 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.01 Total: -42.04 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -77.16 0.99 -76.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484238467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.494 kcal (2) G-P(sol) polarization free energy of solvation -77.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds