Wall clock time and date at job start Tue Mar 31 2020 18:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36771 * 125.80458 * 2 1 4 4 C 1.47258 * 126.93886 * 359.94618 * 3 2 1 5 5 O 1.21623 * 120.00312 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99992 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00405 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47139 * 180.02562 * 7 6 4 9 9 O 1.42898 * 110.88633 * 303.87721 * 8 7 6 10 10 C 1.55152 * 111.00408 * 179.97438 * 8 7 6 11 11 C 1.54318 * 102.94511 * 206.38522 * 10 8 7 12 12 N 1.47022 * 107.27253 * 22.18990 * 11 10 8 13 13 C 1.36933 * 125.65341 * 181.02674 * 12 11 10 14 14 H 1.08006 * 120.00444 * 153.90406 * 13 12 11 15 15 C 1.38817 * 119.99751 * 333.90252 * 13 12 11 16 16 N 1.31616 * 120.00100 * 145.63931 * 15 13 12 17 17 Si 1.86797 * 119.99742 * 325.63468 * 15 13 12 18 18 H 1.48495 * 109.47312 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46991 * 120.00404 * 17 15 13 20 20 H 1.48502 * 109.47132 * 239.99993 * 17 15 13 21 21 C 1.47424 * 108.69946 * 1.29134 * 12 11 10 22 22 C 1.46687 * 106.11405 * 180.20711 * 3 2 1 23 23 C 1.34491 * 106.33183 * 359.63020 * 22 3 2 24 24 N 1.34659 * 125.80036 * 179.97438 * 2 1 3 25 25 C 1.46508 * 124.84948 * 359.97438 * 24 2 1 26 26 C 1.53004 * 109.46920 * 120.00449 * 25 24 2 27 27 C 1.52991 * 109.47315 * 240.00409 * 25 24 2 28 28 H 1.09000 * 109.46840 * 90.01777 * 1 2 3 29 29 H 1.08995 * 109.46890 * 210.02178 * 1 2 3 30 30 H 1.09001 * 109.47001 * 330.02502 * 1 2 3 31 31 H 0.97005 * 119.99678 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47372 * 59.99647 * 7 6 4 33 33 H 1.09001 * 109.46705 * 299.99729 * 7 6 4 34 34 H 0.96701 * 113.99994 * 56.12246 * 9 8 7 35 35 H 1.09001 * 110.72609 * 88.01809 * 10 8 7 36 36 H 1.09005 * 110.87055 * 324.81764 * 10 8 7 37 37 H 1.09006 * 109.88476 * 262.77823 * 11 10 8 38 38 H 1.08998 * 109.88900 * 141.61115 * 11 10 8 39 39 H 0.97006 * 120.00091 * 5.05677 * 16 15 13 40 40 H 1.09000 * 110.36988 * 94.48149 * 21 12 11 41 41 H 1.09005 * 110.36594 * 216.80532 * 21 12 11 42 42 H 1.08000 * 126.83426 * 179.74976 * 22 3 2 43 43 H 1.08002 * 125.56827 * 180.09303 * 23 22 3 44 44 H 1.09003 * 109.47123 * 0.02562 * 25 24 2 45 45 H 1.09000 * 109.46808 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46889 * 299.99784 * 26 25 24 47 47 H 1.08994 * 109.47067 * 60.00237 * 26 25 24 48 48 H 1.08999 * 109.47404 * 60.00098 * 27 25 24 49 49 H 1.08997 * 109.47462 * 180.02562 * 27 25 24 50 50 H 1.09008 * 109.47474 * 300.00157 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5155 -0.0011 5 8 0.6841 2.7839 -0.0026 6 7 2.7851 3.5053 -0.0004 7 6 2.3506 4.9044 -0.0010 8 6 3.5770 5.8193 -0.0007 9 8 4.4298 5.5277 1.1082 10 6 3.1566 7.3128 -0.0019 11 6 4.3603 8.0102 -0.6698 12 7 5.0688 6.9944 -1.4622 13 6 6.2068 7.2040 -2.1944 14 1 6.8818 6.3839 -2.3900 15 6 6.4928 8.4706 -2.6852 16 7 7.7415 8.8782 -2.7669 17 14 5.1052 9.5964 -3.2298 18 1 3.8041 8.9071 -3.0376 19 1 5.1302 10.8406 -2.4194 20 1 5.2783 9.9369 -4.6649 21 6 4.3474 5.7142 -1.3430 22 6 3.6883 0.6150 -0.0051 23 6 3.6095 -0.7276 0.0006 24 7 2.2947 -1.0922 0.0005 25 6 1.8093 -2.4745 0.0016 26 6 2.3205 -3.1955 -1.2473 27 6 2.3211 -3.1937 1.2512 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7312 3.2913 0.0004 32 1 1.7513 5.0991 0.8884 33 1 1.7529 5.0988 -0.8915 34 1 4.7185 4.6058 1.1506 35 1 3.0174 7.6752 1.0167 36 1 2.2505 7.4607 -0.5894 37 1 5.0250 8.4146 0.0937 38 1 4.0103 8.8108 -1.3213 39 1 8.4656 8.2688 -2.5540 40 1 3.6522 5.5917 -2.1735 41 1 5.0522 4.8832 -1.3113 42 1 4.5891 1.2107 -0.0103 43 1 4.4497 -1.4062 0.0005 44 1 0.7193 -2.4768 0.0016 45 1 1.9590 -4.2238 -1.2466 46 1 1.9558 -2.6831 -2.1375 47 1 3.4104 -3.1932 -1.2475 48 1 1.9570 -2.6801 2.1409 49 1 1.9604 -4.2223 1.2518 50 1 3.4112 -3.1915 1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484238468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:11 Heat of formation + Delta-G solvation = -14.347660 kcal Electronic energy + Delta-G solvation = -29403.907210 eV Core-core repulsion = 25432.664409 eV Total energy + Delta-G solvation = -3971.242801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.73249 -39.57238 -38.31744 -35.65279 -35.23435 -34.02682 -32.32815 -31.82477 -30.49921 -29.68699 -28.40616 -27.89924 -26.69957 -25.58636 -23.50218 -22.68645 -22.11062 -20.61685 -20.03456 -19.71934 -18.94690 -17.67986 -17.43148 -16.90789 -16.00922 -15.67410 -15.58626 -15.14194 -14.88553 -14.77438 -14.47788 -13.97307 -13.82557 -13.64990 -13.45181 -13.31064 -13.21084 -12.99590 -12.96796 -12.85461 -12.81336 -12.58406 -12.52775 -12.14690 -11.79202 -11.74032 -11.69541 -11.60353 -11.24949 -11.09128 -10.75436 -10.55841 -10.38584 -9.76277 -9.68638 -9.50301 -9.23206 -9.03831 -8.76622 -8.30429 -8.20262 -7.01115 -6.27029 -3.20776 1.64741 2.25553 2.45072 3.38522 3.50263 3.56609 3.58964 3.71670 4.01656 4.32840 4.38419 4.41495 4.50239 4.63915 4.68059 4.74376 4.91396 4.97755 4.99254 5.04017 5.10076 5.10555 5.19803 5.23975 5.33932 5.35869 5.41850 5.49165 5.52529 5.54297 5.71275 5.77788 5.80794 5.85179 5.96656 6.06151 6.18355 6.25011 6.43236 6.50539 6.53155 6.60634 6.78887 6.88078 6.94493 7.03289 7.62389 7.88817 7.96448 8.39777 8.41708 9.05421 9.65233 10.39073 11.09919 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.002402 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.980926 B =11653.093869 C =12213.712692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.236 4.236 4 C 0.594 3.406 5 O -0.555 6.555 6 N -0.723 5.723 7 C 0.107 3.893 8 C 0.103 3.897 9 O -0.537 6.537 10 C -0.114 4.114 11 C 0.128 3.872 12 N -0.596 5.596 13 C -0.340 4.340 14 H 0.065 0.935 15 C -0.006 4.006 16 N -0.902 5.902 17 Si 1.049 2.951 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.298 1.298 21 C 0.110 3.890 22 C -0.166 4.166 23 C -0.014 4.014 24 N -0.436 5.436 25 C 0.120 3.880 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.365 0.635 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -25.892 7.821 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.246 4.246 4 C 0.383 3.617 5 O -0.435 6.435 6 N -0.375 5.375 7 C -0.017 4.017 8 C 0.061 3.939 9 O -0.342 6.342 10 C -0.153 4.153 11 C 0.003 3.997 12 N -0.323 5.323 13 C -0.468 4.468 14 H 0.082 0.918 15 C -0.209 4.209 16 N -0.541 5.541 17 Si 0.880 3.120 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.226 1.226 21 C -0.016 4.016 22 C -0.190 4.190 23 C -0.140 4.140 24 N -0.114 5.114 25 C 0.018 3.982 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.212 0.788 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.842 -23.855 7.323 29.034 hybrid contribution 1.117 -2.290 0.276 2.563 sum -13.725 -26.145 7.599 30.491 Atomic orbital electron populations 1.20568 0.87311 1.03915 1.03328 1.20283 0.93656 0.85178 1.01987 1.20078 0.93260 0.91806 1.19452 1.17308 0.85167 0.84000 0.75231 1.90716 1.16659 1.84504 1.51572 1.45699 1.09784 1.05975 1.76021 1.21943 0.97126 0.79710 1.02968 1.22694 0.88386 0.95013 0.87782 1.86606 1.68328 1.31784 1.47450 1.22560 0.99020 0.92101 1.01576 1.21581 0.91753 0.92682 0.93701 1.44537 1.28634 1.04814 1.54312 1.19740 0.96481 0.98338 1.32218 0.91753 1.26062 1.00965 0.97028 0.96890 1.70920 0.99309 1.34573 1.49275 0.84032 0.76094 0.75367 0.76498 1.20538 1.21893 1.22603 1.22284 0.94326 0.91849 0.93136 1.22025 0.95760 0.93594 1.07621 1.21531 0.85630 0.95986 1.10839 1.43838 1.05877 1.05470 1.56174 1.21521 1.00456 0.79244 0.97005 1.22171 1.02439 1.00720 0.96729 1.22173 1.02445 1.00741 0.96705 0.90568 0.92159 0.88007 0.76793 0.90828 0.90427 0.78834 0.90310 0.90145 0.94291 0.95214 0.92417 0.95337 0.93996 0.83719 0.81935 0.88137 0.90581 0.91613 0.91531 0.91659 0.90584 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.34 36.01 0.34 -0.54 16 2 C 0.11 1.15 6.89 -81.88 -0.56 0.59 16 3 C -0.24 -2.97 6.29 -103.35 -0.65 -3.62 16 4 C 0.59 8.69 7.81 -12.59 -0.10 8.59 16 5 O -0.55 -9.50 14.81 5.26 0.08 -9.42 16 6 N -0.72 -9.69 5.20 -61.44 -0.32 -10.01 16 7 C 0.11 1.57 4.89 -4.04 -0.02 1.55 16 8 C 0.10 1.74 0.97 -88.35 -0.09 1.66 16 9 O -0.54 -9.09 13.21 -35.23 -0.47 -9.56 16 10 C -0.11 -2.02 6.15 -24.90 -0.15 -2.18 16 11 C 0.13 2.90 6.04 -3.07 -0.02 2.89 16 12 N -0.60 -15.01 3.05 -169.93 -0.52 -15.53 16 13 C -0.34 -9.92 10.24 -15.06 -0.15 -10.07 16 14 H 0.06 1.98 8.06 -52.48 -0.42 1.56 16 15 C -0.01 -0.17 5.29 -17.43 -0.09 -0.26 16 16 N -0.90 -28.34 13.70 55.49 0.76 -27.58 16 17 Si 1.05 26.75 26.22 -169.99 -4.46 22.29 16 18 H -0.28 -6.70 6.18 56.52 0.35 -6.35 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 21 C 0.11 2.24 6.22 -2.41 -0.02 2.23 16 22 C -0.17 -1.73 10.56 -37.50 -0.40 -2.13 16 23 C -0.01 -0.12 10.17 -16.83 -0.17 -0.29 16 24 N -0.44 -3.71 2.57 -105.46 -0.27 -3.98 16 25 C 0.12 0.64 3.45 -67.93 -0.23 0.41 16 26 C -0.16 -0.72 9.23 37.16 0.34 -0.38 16 27 C -0.16 -0.68 9.22 37.15 0.34 -0.34 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.40 6.96 -51.93 -0.36 0.04 16 30 H 0.10 1.16 6.47 -51.93 -0.34 0.82 16 31 H 0.40 4.65 6.40 -40.82 -0.26 4.39 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.37 4.80 7.69 45.56 0.35 5.15 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.70 3.85 -51.93 -0.20 0.50 16 39 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 40 H 0.03 0.59 7.99 -51.93 -0.41 0.18 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.15 1.29 7.70 -52.49 -0.40 0.89 16 43 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.10 0.46 6.47 -51.93 -0.34 0.13 16 45 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.30 7.88 -51.93 -0.41 -0.11 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.07 0.28 7.88 -51.92 -0.41 -0.13 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -36.18 395.44 -8.34 -44.51 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.47 Total: 5.21 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.63 Total: -1.90 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.35 Total: -57.09 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.39 Total: -18.98 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.46 Total: 22.29 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.18 -8.34 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484238468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.167 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds