Wall clock time and date at job start Tue Mar 31 2020 18:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36771 * 125.80458 * 2 1 4 4 C 1.47258 * 126.93886 * 359.94618 * 3 2 1 5 5 O 1.21623 * 120.00312 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99992 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00405 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47139 * 180.02562 * 7 6 4 9 9 O 1.42898 * 110.88633 * 303.87721 * 8 7 6 10 10 C 1.55152 * 111.00408 * 179.97438 * 8 7 6 11 11 C 1.54318 * 102.94511 * 206.38522 * 10 8 7 12 12 N 1.47022 * 107.27253 * 22.18990 * 11 10 8 13 13 C 1.36933 * 125.65341 * 181.02674 * 12 11 10 14 14 H 1.08006 * 120.00444 * 153.90406 * 13 12 11 15 15 C 1.38817 * 119.99751 * 333.90252 * 13 12 11 16 16 N 1.31616 * 120.00100 * 145.63931 * 15 13 12 17 17 Si 1.86797 * 119.99742 * 325.63468 * 15 13 12 18 18 H 1.48495 * 109.47312 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46991 * 120.00404 * 17 15 13 20 20 H 1.48502 * 109.47132 * 239.99993 * 17 15 13 21 21 C 1.47424 * 108.69946 * 1.29134 * 12 11 10 22 22 C 1.46687 * 106.11405 * 180.20711 * 3 2 1 23 23 C 1.34491 * 106.33183 * 359.63020 * 22 3 2 24 24 N 1.34659 * 125.80036 * 179.97438 * 2 1 3 25 25 C 1.46508 * 124.84948 * 359.97438 * 24 2 1 26 26 C 1.53004 * 109.46920 * 120.00449 * 25 24 2 27 27 C 1.52991 * 109.47315 * 240.00409 * 25 24 2 28 28 H 1.09000 * 109.46840 * 90.01777 * 1 2 3 29 29 H 1.08995 * 109.46890 * 210.02178 * 1 2 3 30 30 H 1.09001 * 109.47001 * 330.02502 * 1 2 3 31 31 H 0.97005 * 119.99678 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47372 * 59.99647 * 7 6 4 33 33 H 1.09001 * 109.46705 * 299.99729 * 7 6 4 34 34 H 0.96701 * 113.99994 * 56.12246 * 9 8 7 35 35 H 1.09001 * 110.72609 * 88.01809 * 10 8 7 36 36 H 1.09005 * 110.87055 * 324.81764 * 10 8 7 37 37 H 1.09006 * 109.88476 * 262.77823 * 11 10 8 38 38 H 1.08998 * 109.88900 * 141.61115 * 11 10 8 39 39 H 0.97006 * 120.00091 * 5.05677 * 16 15 13 40 40 H 1.09000 * 110.36988 * 94.48149 * 21 12 11 41 41 H 1.09005 * 110.36594 * 216.80532 * 21 12 11 42 42 H 1.08000 * 126.83426 * 179.74976 * 22 3 2 43 43 H 1.08002 * 125.56827 * 180.09303 * 23 22 3 44 44 H 1.09003 * 109.47123 * 0.02562 * 25 24 2 45 45 H 1.09000 * 109.46808 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46889 * 299.99784 * 26 25 24 47 47 H 1.08994 * 109.47067 * 60.00237 * 26 25 24 48 48 H 1.08999 * 109.47404 * 60.00098 * 27 25 24 49 49 H 1.08997 * 109.47462 * 180.02562 * 27 25 24 50 50 H 1.09008 * 109.47474 * 300.00157 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5155 -0.0011 5 8 0.6841 2.7839 -0.0026 6 7 2.7851 3.5053 -0.0004 7 6 2.3506 4.9044 -0.0010 8 6 3.5770 5.8193 -0.0007 9 8 4.4298 5.5277 1.1082 10 6 3.1566 7.3128 -0.0019 11 6 4.3603 8.0102 -0.6698 12 7 5.0688 6.9944 -1.4622 13 6 6.2068 7.2040 -2.1944 14 1 6.8818 6.3839 -2.3900 15 6 6.4928 8.4706 -2.6852 16 7 7.7415 8.8782 -2.7669 17 14 5.1052 9.5964 -3.2298 18 1 3.8041 8.9071 -3.0376 19 1 5.1302 10.8406 -2.4194 20 1 5.2783 9.9369 -4.6649 21 6 4.3474 5.7142 -1.3430 22 6 3.6883 0.6150 -0.0051 23 6 3.6095 -0.7276 0.0006 24 7 2.2947 -1.0922 0.0005 25 6 1.8093 -2.4745 0.0016 26 6 2.3205 -3.1955 -1.2473 27 6 2.3211 -3.1937 1.2512 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7312 3.2913 0.0004 32 1 1.7513 5.0991 0.8884 33 1 1.7529 5.0988 -0.8915 34 1 4.7185 4.6058 1.1506 35 1 3.0174 7.6752 1.0167 36 1 2.2505 7.4607 -0.5894 37 1 5.0250 8.4146 0.0937 38 1 4.0103 8.8108 -1.3213 39 1 8.4656 8.2688 -2.5540 40 1 3.6522 5.5917 -2.1735 41 1 5.0522 4.8832 -1.3113 42 1 4.5891 1.2107 -0.0103 43 1 4.4497 -1.4062 0.0005 44 1 0.7193 -2.4768 0.0016 45 1 1.9590 -4.2238 -1.2466 46 1 1.9558 -2.6831 -2.1375 47 1 3.4104 -3.1932 -1.2475 48 1 1.9570 -2.6801 2.1409 49 1 1.9604 -4.2223 1.2518 50 1 3.4112 -3.1915 1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484238468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:10 Heat of formation + Delta-G solvation = -40.610259 kcal Electronic energy + Delta-G solvation = -29405.046042 eV Core-core repulsion = 25432.664409 eV Total energy + Delta-G solvation = -3972.381632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.45333 -40.84460 -39.64515 -36.89730 -36.15488 -35.22300 -34.38664 -32.57496 -31.82301 -30.90978 -29.82645 -28.20995 -27.79516 -26.93085 -25.04323 -23.40612 -23.10291 -22.41026 -21.45392 -20.82178 -19.62502 -19.54599 -18.56483 -17.88300 -17.21122 -16.92351 -16.53366 -16.42882 -16.24377 -15.83006 -15.53075 -15.37758 -15.02183 -14.90085 -14.64469 -14.49274 -14.29375 -14.04202 -14.00117 -13.62087 -13.56348 -13.44616 -13.38540 -13.06151 -13.00042 -12.95827 -12.86170 -12.50595 -12.44282 -12.34642 -12.21641 -11.98073 -11.83251 -11.66533 -11.29409 -11.03781 -10.85545 -10.41892 -10.15577 -9.52687 -9.16429 -9.08940 -8.55419 -5.48349 0.75268 1.43939 1.51734 1.52911 1.72202 1.79519 2.35244 2.52357 2.58094 2.93758 3.11107 3.34606 3.58146 3.63030 3.77776 3.78179 3.86663 3.96097 3.98902 4.06983 4.17734 4.34082 4.37442 4.44016 4.54201 4.63244 4.65086 4.68702 4.76044 4.79424 4.79904 4.81301 4.85381 4.86007 4.93622 4.96204 5.05571 5.09299 5.22374 5.22875 5.23041 5.26980 5.42602 5.71260 5.81391 6.13240 6.15864 6.37624 6.58360 6.71330 6.82522 7.31681 7.50097 8.21203 8.76648 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.002402 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.980926 B =11653.093869 C =12213.712692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.099 3.901 3 C -0.270 4.270 4 C 0.589 3.411 5 O -0.586 6.586 6 N -0.718 5.718 7 C 0.120 3.880 8 C 0.122 3.878 9 O -0.550 6.550 10 C -0.108 4.108 11 C 0.118 3.882 12 N -0.616 5.616 13 C -0.335 4.335 14 H 0.031 0.969 15 C -0.060 4.060 16 N -0.936 5.936 17 Si 1.093 2.907 18 H -0.255 1.255 19 H -0.284 1.284 20 H -0.294 1.294 21 C 0.106 3.894 22 C -0.184 4.184 23 C -0.006 4.006 24 N -0.430 5.430 25 C 0.113 3.887 26 C -0.159 4.159 27 C -0.159 4.159 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.405 0.595 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.381 0.619 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.017 0.983 38 H 0.029 0.971 39 H 0.251 0.749 40 H 0.034 0.966 41 H 0.042 0.958 42 H 0.153 0.847 43 H 0.191 0.809 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -28.021 8.523 33.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.020 4.020 3 C -0.280 4.280 4 C 0.381 3.619 5 O -0.469 6.469 6 N -0.370 5.370 7 C -0.005 4.005 8 C 0.080 3.920 9 O -0.357 6.357 10 C -0.146 4.146 11 C -0.006 4.006 12 N -0.343 5.343 13 C -0.464 4.464 14 H 0.049 0.951 15 C -0.257 4.257 16 N -0.576 5.576 17 Si 0.918 3.082 18 H -0.180 1.180 19 H -0.210 1.210 20 H -0.222 1.222 21 C -0.019 4.019 22 C -0.208 4.208 23 C -0.133 4.133 24 N -0.106 5.106 25 C 0.012 3.988 26 C -0.217 4.217 27 C -0.216 4.216 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.241 0.759 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.171 0.829 43 H 0.208 0.792 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.115 0.885 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.914 -26.045 8.047 32.081 hybrid contribution 1.838 -1.822 0.102 2.590 sum -15.077 -27.867 8.149 32.715 Atomic orbital electron populations 1.20526 0.86580 1.04129 1.03498 1.20512 0.94390 0.85641 1.01450 1.20127 0.94786 0.91164 1.21928 1.17658 0.84785 0.84948 0.74543 1.90690 1.17850 1.85076 1.53236 1.45617 1.10163 1.05406 1.75796 1.21724 0.95704 0.79820 1.03205 1.22438 0.88479 0.95341 0.85757 1.86577 1.68545 1.33494 1.47106 1.22603 0.97632 0.91700 1.02681 1.21716 0.93065 0.92739 0.93102 1.44619 1.28371 1.07214 1.54116 1.19622 0.97449 0.97434 1.31898 0.95101 1.27256 1.02166 0.99275 0.97037 1.71040 0.99879 1.34702 1.52007 0.83463 0.74333 0.74202 0.76172 1.17964 1.21030 1.22222 1.22459 0.94401 0.89573 0.95486 1.22214 0.95251 0.94602 1.08690 1.21972 0.86441 0.95891 1.08957 1.44105 1.05617 1.06232 1.54626 1.21838 1.01173 0.77622 0.98154 1.22159 1.02462 1.01590 0.95461 1.22157 1.02494 1.01576 0.95385 0.90358 0.89417 0.90269 0.75886 0.90145 0.90615 0.76990 0.88240 0.87560 0.96488 0.95336 0.93922 0.94836 0.94016 0.82929 0.79180 0.87219 0.88444 0.92959 0.91465 0.92721 0.88482 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.34 71.24 0.67 -0.93 16 2 C 0.10 2.05 6.89 41.78 0.29 2.34 16 3 C -0.27 -6.64 6.29 -19.04 -0.12 -6.76 16 4 C 0.59 17.01 7.81 86.61 0.68 17.69 16 5 O -0.59 -20.00 14.81 -4.10 -0.06 -20.06 16 6 N -0.72 -18.47 5.20 -466.54 -2.42 -20.90 16 7 C 0.12 3.29 4.89 86.38 0.42 3.71 16 8 C 0.12 3.88 0.97 -9.33 -0.01 3.87 16 9 O -0.55 -17.70 13.21 -148.98 -1.97 -19.67 16 10 C -0.11 -3.54 6.15 31.78 0.20 -3.35 16 11 C 0.12 5.24 6.04 86.73 0.52 5.76 16 12 N -0.62 -30.89 3.05 -691.54 -2.11 -33.00 16 13 C -0.34 -19.99 10.24 84.04 0.86 -19.13 16 14 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 15 C -0.06 -3.63 5.29 84.86 0.45 -3.18 16 16 N -0.94 -60.54 13.70 21.65 0.30 -60.24 16 17 Si 1.09 54.01 26.22 68.60 1.80 55.81 16 18 H -0.25 -11.45 6.18 99.48 0.61 -10.83 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 21 C 0.11 4.22 6.22 86.93 0.54 4.76 16 22 C -0.18 -3.64 10.56 23.62 0.25 -3.39 16 23 C -0.01 -0.10 10.17 83.12 0.85 0.75 16 24 N -0.43 -6.48 2.57 -487.56 -1.25 -7.73 16 25 C 0.11 0.91 3.45 44.99 0.16 1.07 16 26 C -0.16 -0.98 9.23 71.98 0.66 -0.31 16 27 C -0.16 -0.87 9.22 71.98 0.66 -0.21 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.00 6.96 -2.39 -0.02 0.98 16 30 H 0.08 1.80 6.47 -2.39 -0.02 1.79 16 31 H 0.41 9.07 6.40 -92.70 -0.59 8.47 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 34 H 0.38 9.42 7.69 -74.06 -0.57 8.85 16 35 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.11 2.96 8.04 -2.38 -0.02 2.94 16 37 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.03 1.29 3.85 -2.39 -0.01 1.28 16 39 H 0.25 16.35 8.73 -92.70 -0.81 15.54 16 40 H 0.03 1.33 7.99 -2.39 -0.02 1.31 16 41 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.15 2.58 7.70 -2.91 -0.02 2.56 16 43 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.11 0.69 6.47 -2.39 -0.02 0.68 16 45 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.42 7.88 -2.39 -0.02 0.40 16 48 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.07 0.37 7.88 -2.38 -0.02 0.35 16 Total: -1.00 -80.47 395.44 1.01 -79.46 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.34 Total: 23.65 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 7.07 Total: 2.68 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -5.49 Total: -121.87 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -2.03 Total: -39.73 kcal Atomic # 14 Polarization: 54.01 SS G_CDS: 1.80 Total: 55.81 kcal Total: -80.47 1.01 -79.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484238468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.851 kcal (2) G-P(sol) polarization free energy of solvation -80.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds