Wall clock time and date at job start Tue Mar 31 2020 19:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.45982 * 2 1 4 4 C 1.46898 * 111.00189 * 59.99932 * 3 2 1 5 5 C 1.50696 * 109.47176 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00279 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99735 * 179.97438 * 5 4 3 8 8 C 1.37105 * 119.99904 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99780 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99815 * 179.72596 * 8 7 5 11 11 N 1.31414 * 119.99692 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00158 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99806 * 12 10 8 14 14 H 1.48499 * 109.47039 * 209.99966 * 12 10 8 15 15 H 1.48502 * 109.46906 * 329.99872 * 12 10 8 16 16 C 1.53035 * 109.46235 * 119.97122 * 2 1 3 17 17 C 1.53194 * 109.31152 * 58.63014 * 16 2 1 18 18 N 1.46924 * 108.76589 * 54.65705 * 17 16 2 19 19 C 1.34778 * 120.62939 * 126.36170 * 18 17 16 20 20 O 1.21288 * 119.99414 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00162 * 0.02562 * 19 18 17 22 22 H 1.08999 * 115.54652 * 34.42319 * 21 19 18 23 23 C 1.53001 * 117.49770 * 248.74473 * 21 19 18 24 24 C 1.52995 * 117.49653 * 180.08892 * 21 19 18 25 25 C 1.52998 * 138.58720 * 336.59472 * 24 21 19 26 26 C 1.52998 * 138.58403 * 238.38441 * 24 21 19 27 27 C 1.46923 * 118.73637 * 306.38187 * 18 17 16 28 28 C 1.53045 * 109.45966 * 240.02840 * 2 1 3 29 29 H 1.08994 * 109.47168 * 60.00142 * 1 2 3 30 30 H 1.09000 * 109.46541 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46863 * 299.99736 * 1 2 3 32 32 H 1.00894 * 111.00335 * 183.95891 * 3 2 1 33 33 H 1.09000 * 109.46741 * 60.00112 * 4 3 2 34 34 H 1.09002 * 109.46898 * 300.00102 * 4 3 2 35 35 H 0.97005 * 120.00189 * 0.02562 * 7 5 4 36 36 H 0.96995 * 119.99830 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.50083 * 178.59349 * 16 2 1 38 38 H 1.09002 * 109.50064 * 298.69371 * 16 2 1 39 39 H 1.08994 * 109.59629 * 294.86213 * 17 16 2 40 40 H 1.09000 * 109.58433 * 174.43696 * 17 16 2 41 41 H 1.08994 * 117.50147 * 0.02562 * 23 21 19 42 42 H 1.08997 * 117.49459 * 145.00386 * 23 21 19 43 43 H 1.08995 * 117.50425 * 336.59653 * 25 24 21 44 44 H 1.09001 * 117.49446 * 121.62485 * 25 24 21 45 45 H 1.09006 * 117.49582 * 238.38174 * 26 24 21 46 46 H 1.08996 * 117.50067 * 23.38265 * 26 24 21 47 47 H 1.08998 * 109.58715 * 293.82199 * 27 18 17 48 48 H 1.09005 * 109.58609 * 173.39441 * 27 18 17 49 49 H 1.08994 * 109.49940 * 61.30790 * 28 2 1 50 50 H 1.09004 * 109.49522 * 181.36962 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 1.5483 2.1099 1.1877 5 6 2.0686 3.5238 1.1525 6 8 2.7631 3.8916 0.2287 7 7 1.7612 4.3798 2.1471 8 6 2.2350 5.6660 2.1154 9 1 2.8541 5.9933 1.2933 10 6 1.9135 6.5503 3.1379 11 7 2.3672 7.7832 3.1073 12 14 0.8363 5.9864 4.5561 13 1 1.6910 5.4349 5.6380 14 1 0.0605 7.1402 5.0776 15 1 -0.0990 4.9357 4.0799 16 6 2.0399 -0.7208 1.2500 17 6 1.4991 -2.1541 1.2643 18 7 1.8621 -2.8089 0.0002 19 6 2.5158 -3.9875 0.0003 20 8 2.8103 -4.5177 -1.0500 21 6 2.8808 -4.6466 1.3055 22 1 2.1677 -4.5074 2.1180 23 6 4.3648 -4.7146 1.6718 24 6 3.6241 -5.9822 1.2388 25 6 3.8114 -7.1435 0.2605 26 6 3.4390 -7.4234 1.7180 27 6 1.4994 -2.1542 -1.2641 28 6 2.0399 -0.7209 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0259 1.4130 -0.0650 33 1 1.9119 1.6108 2.0858 34 1 0.4584 2.1243 1.1959 35 1 1.2054 4.0858 2.8857 36 1 2.1431 8.4003 3.8212 37 1 3.1296 -0.7431 1.2381 38 1 1.6960 -0.1935 2.1398 39 1 0.4142 -2.1344 1.3674 40 1 1.9376 -2.7017 2.0986 41 1 5.0770 -4.2824 0.9690 42 1 4.6279 -4.6203 2.7253 43 1 3.0397 -7.2954 -0.4941 44 1 4.8286 -7.3783 -0.0530 45 1 4.2112 -7.8423 2.3632 46 1 2.4224 -7.7592 1.9224 47 1 0.4145 -2.1346 -1.3673 48 1 1.9380 -2.7019 -2.0983 49 1 1.6960 -0.1936 -2.1398 50 1 3.1296 -0.7426 -1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484924680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:00 Heat of formation + Delta-G solvation = 4.595973 kcal Electronic energy + Delta-G solvation = -29227.113127 eV Core-core repulsion = 25256.691784 eV Total energy + Delta-G solvation = -3970.421343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.89092 -39.38184 -38.27135 -37.50474 -35.35201 -33.96946 -33.15421 -31.83869 -31.59143 -31.08955 -27.98471 -27.17161 -25.23234 -24.01981 -23.75136 -22.74628 -22.49206 -20.55109 -19.40353 -19.25077 -18.38531 -18.25480 -17.69928 -16.40214 -16.15110 -15.76461 -15.37523 -15.19088 -15.15946 -15.09464 -14.70401 -14.65392 -14.21907 -14.14537 -13.62076 -13.38591 -12.98863 -12.78518 -12.72714 -12.44512 -12.34510 -12.19880 -12.06213 -11.98829 -11.82858 -11.65738 -11.48682 -11.38023 -11.19889 -10.89501 -10.62179 -10.59410 -10.53495 -10.44922 -10.35556 -9.99218 -9.90603 -9.58870 -8.92053 -8.59787 -8.20781 -8.12372 -6.32503 -3.83973 2.19667 2.58445 3.00247 3.04023 3.12916 3.32916 3.38020 3.72428 3.87234 3.99620 4.08522 4.19005 4.37554 4.44849 4.55254 4.64159 4.72166 4.82693 4.89409 4.99937 5.02430 5.06642 5.14862 5.18526 5.22659 5.25631 5.29775 5.31333 5.40631 5.43295 5.51206 5.56548 5.57573 5.58437 5.64762 5.71891 5.75863 5.81793 5.85510 5.88471 5.97177 6.05059 6.21088 6.31236 7.10991 7.11352 7.55207 7.57422 7.92753 8.13300 8.58357 8.93716 9.40950 9.81445 10.80671 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002197 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.452799 B =12739.293302 C =13353.659778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.115 3.885 3 N -0.655 5.655 4 C 0.044 3.956 5 C 0.449 3.551 6 O -0.564 6.564 7 N -0.591 5.591 8 C -0.305 4.305 9 H 0.119 0.881 10 C 0.040 3.960 11 N -0.881 5.881 12 Si 0.880 3.120 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.269 1.269 16 C -0.168 4.168 17 C 0.110 3.890 18 N -0.607 5.607 19 C 0.544 3.456 20 O -0.537 6.537 21 C -0.143 4.143 22 H 0.124 0.876 23 C -0.099 4.099 24 C -0.202 4.202 25 C -0.113 4.113 26 C -0.130 4.130 27 C 0.113 3.887 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.351 0.649 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -29.006 0.619 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.023 3.977 3 N -0.287 5.287 4 C -0.089 4.089 5 C 0.235 3.765 6 O -0.446 6.446 7 N -0.231 5.231 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.706 3.294 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.195 1.195 16 C -0.208 4.208 17 C -0.013 4.013 18 N -0.341 5.341 19 C 0.332 3.668 20 O -0.413 6.413 21 C -0.164 4.164 22 H 0.142 0.858 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.150 4.150 26 C -0.167 4.167 27 C -0.010 4.010 28 C -0.158 4.158 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.069 -28.545 -0.901 28.723 hybrid contribution -0.429 -0.330 2.158 2.225 sum -3.498 -28.874 1.257 29.113 Atomic orbital electron populations 1.22018 0.93844 1.01419 1.03058 1.20914 0.95625 0.87777 0.93375 1.60263 1.17518 1.10938 1.39968 1.21796 1.01250 0.93798 0.92060 1.19744 0.85694 0.86684 0.84363 1.90569 1.40894 1.78009 1.35132 1.42208 1.47364 1.12021 1.21476 1.19432 1.29637 0.84553 1.09717 0.86305 1.25049 0.97899 0.95292 0.98000 1.69622 1.44611 1.04286 1.33605 0.86669 0.80812 0.78956 0.82931 1.19684 1.20167 1.19488 1.22757 1.01751 0.95670 1.00651 1.21784 1.00419 0.93387 0.85703 1.48067 1.57425 1.20960 1.07619 1.19682 0.76945 0.80318 0.89868 1.90685 1.53875 1.63632 1.33136 1.21995 0.97741 0.99071 0.97592 0.85796 1.22675 0.91660 0.96994 1.02276 1.21180 1.04942 0.85586 1.08569 1.22597 1.02797 0.97197 0.92377 1.22772 1.02647 0.93263 0.97974 1.21677 1.00090 0.92795 0.86398 1.21906 1.01193 0.94122 0.98562 0.91386 0.92236 0.92296 0.82933 0.93587 0.89236 0.79759 0.91619 0.91211 0.90063 0.90835 0.89689 0.88016 0.87475 0.88224 0.88503 0.88282 0.88549 0.91042 0.88892 0.89406 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.48 37.16 0.28 -1.13 16 2 C 0.11 1.22 0.71 -131.56 -0.09 1.12 16 3 N -0.66 -9.53 5.71 -101.18 -0.58 -10.11 16 4 C 0.04 0.68 5.38 -4.98 -0.03 0.65 16 5 C 0.45 9.98 7.82 -10.99 -0.09 9.90 16 6 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 7 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 8 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 9 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 10 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 11 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 12 Si 0.88 19.08 27.73 -169.99 -4.71 14.37 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 16 C -0.17 -1.52 4.70 -26.61 -0.13 -1.64 16 17 C 0.11 0.82 5.83 -3.71 -0.02 0.80 16 18 N -0.61 -5.72 2.97 -172.77 -0.51 -6.23 16 19 C 0.54 5.99 7.48 -10.99 -0.08 5.91 16 20 O -0.54 -7.71 15.66 5.55 0.09 -7.63 16 21 C -0.14 -1.21 4.96 -91.77 -0.45 -1.67 16 22 H 0.12 0.80 6.82 -51.93 -0.35 0.44 16 23 C -0.10 -0.76 10.24 -26.70 -0.27 -1.03 16 24 C -0.20 -1.73 5.06 -154.48 -0.78 -2.51 16 25 C -0.11 -0.94 10.16 -26.73 -0.27 -1.21 16 26 C -0.13 -0.86 10.53 -26.73 -0.28 -1.14 16 27 C 0.11 1.08 5.96 -3.71 -0.02 1.06 16 28 C -0.12 -1.22 5.17 -26.61 -0.14 -1.36 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.47 4.98 -51.93 -0.26 0.22 16 31 H 0.06 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.35 5.46 8.42 -39.29 -0.33 5.13 16 33 H 0.05 0.62 6.27 -51.93 -0.33 0.29 16 34 H 0.09 1.27 6.30 -51.93 -0.33 0.94 16 35 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.71 6.33 -51.93 -0.33 0.38 16 39 H 0.07 0.48 6.69 -51.93 -0.35 0.13 16 40 H 0.08 0.51 5.68 -51.93 -0.29 0.21 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.60 6.69 -51.93 -0.35 0.26 16 48 H 0.09 1.01 7.01 -51.93 -0.36 0.64 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -34.24 389.25 -9.30 -43.54 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -7.63 Total: 13.80 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.63 Total: 0.05 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.37 Total: -55.08 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.55 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.24 -9.30 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484924680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.139 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds