Wall clock time and date at job start Tue Mar 31 2020 19:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.45982 * 2 1 4 4 C 1.46898 * 111.00189 * 59.99932 * 3 2 1 5 5 C 1.50696 * 109.47176 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00279 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99735 * 179.97438 * 5 4 3 8 8 C 1.37105 * 119.99904 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99780 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99815 * 179.72596 * 8 7 5 11 11 N 1.31414 * 119.99692 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00158 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99806 * 12 10 8 14 14 H 1.48499 * 109.47039 * 209.99966 * 12 10 8 15 15 H 1.48502 * 109.46906 * 329.99872 * 12 10 8 16 16 C 1.53035 * 109.46235 * 119.97122 * 2 1 3 17 17 C 1.53194 * 109.31152 * 58.63014 * 16 2 1 18 18 N 1.46924 * 108.76589 * 54.65705 * 17 16 2 19 19 C 1.34778 * 120.62939 * 126.36170 * 18 17 16 20 20 O 1.21288 * 119.99414 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00162 * 0.02562 * 19 18 17 22 22 H 1.08999 * 115.54652 * 34.42319 * 21 19 18 23 23 C 1.53001 * 117.49770 * 248.74473 * 21 19 18 24 24 C 1.52995 * 117.49653 * 180.08892 * 21 19 18 25 25 C 1.52998 * 138.58720 * 336.59472 * 24 21 19 26 26 C 1.52998 * 138.58403 * 238.38441 * 24 21 19 27 27 C 1.46923 * 118.73637 * 306.38187 * 18 17 16 28 28 C 1.53045 * 109.45966 * 240.02840 * 2 1 3 29 29 H 1.08994 * 109.47168 * 60.00142 * 1 2 3 30 30 H 1.09000 * 109.46541 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46863 * 299.99736 * 1 2 3 32 32 H 1.00894 * 111.00335 * 183.95891 * 3 2 1 33 33 H 1.09000 * 109.46741 * 60.00112 * 4 3 2 34 34 H 1.09002 * 109.46898 * 300.00102 * 4 3 2 35 35 H 0.97005 * 120.00189 * 0.02562 * 7 5 4 36 36 H 0.96995 * 119.99830 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.50083 * 178.59349 * 16 2 1 38 38 H 1.09002 * 109.50064 * 298.69371 * 16 2 1 39 39 H 1.08994 * 109.59629 * 294.86213 * 17 16 2 40 40 H 1.09000 * 109.58433 * 174.43696 * 17 16 2 41 41 H 1.08994 * 117.50147 * 0.02562 * 23 21 19 42 42 H 1.08997 * 117.49459 * 145.00386 * 23 21 19 43 43 H 1.08995 * 117.50425 * 336.59653 * 25 24 21 44 44 H 1.09001 * 117.49446 * 121.62485 * 25 24 21 45 45 H 1.09006 * 117.49582 * 238.38174 * 26 24 21 46 46 H 1.08996 * 117.50067 * 23.38265 * 26 24 21 47 47 H 1.08998 * 109.58715 * 293.82199 * 27 18 17 48 48 H 1.09005 * 109.58609 * 173.39441 * 27 18 17 49 49 H 1.08994 * 109.49940 * 61.30790 * 28 2 1 50 50 H 1.09004 * 109.49522 * 181.36962 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 1.5483 2.1099 1.1877 5 6 2.0686 3.5238 1.1525 6 8 2.7631 3.8916 0.2287 7 7 1.7612 4.3798 2.1471 8 6 2.2350 5.6660 2.1154 9 1 2.8541 5.9933 1.2933 10 6 1.9135 6.5503 3.1379 11 7 2.3672 7.7832 3.1073 12 14 0.8363 5.9864 4.5561 13 1 1.6910 5.4349 5.6380 14 1 0.0605 7.1402 5.0776 15 1 -0.0990 4.9357 4.0799 16 6 2.0399 -0.7208 1.2500 17 6 1.4991 -2.1541 1.2643 18 7 1.8621 -2.8089 0.0002 19 6 2.5158 -3.9875 0.0003 20 8 2.8103 -4.5177 -1.0500 21 6 2.8808 -4.6466 1.3055 22 1 2.1677 -4.5074 2.1180 23 6 4.3648 -4.7146 1.6718 24 6 3.6241 -5.9822 1.2388 25 6 3.8114 -7.1435 0.2605 26 6 3.4390 -7.4234 1.7180 27 6 1.4994 -2.1542 -1.2641 28 6 2.0399 -0.7209 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0259 1.4130 -0.0650 33 1 1.9119 1.6108 2.0858 34 1 0.4584 2.1243 1.1959 35 1 1.2054 4.0858 2.8857 36 1 2.1431 8.4003 3.8212 37 1 3.1296 -0.7431 1.2381 38 1 1.6960 -0.1935 2.1398 39 1 0.4142 -2.1344 1.3674 40 1 1.9376 -2.7017 2.0986 41 1 5.0770 -4.2824 0.9690 42 1 4.6279 -4.6203 2.7253 43 1 3.0397 -7.2954 -0.4941 44 1 4.8286 -7.3783 -0.0530 45 1 4.2112 -7.8423 2.3632 46 1 2.4224 -7.7592 1.9224 47 1 0.4145 -2.1346 -1.3673 48 1 1.9380 -2.7019 -2.0983 49 1 1.6960 -0.1936 -2.1398 50 1 3.1296 -0.7426 -1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484924680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:59 Heat of formation + Delta-G solvation = -20.264295 kcal Electronic energy + Delta-G solvation = -29228.191149 eV Core-core repulsion = 25256.691784 eV Total energy + Delta-G solvation = -3971.499365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68417 -40.49692 -39.67605 -38.29519 -36.41527 -35.87132 -33.84701 -33.71578 -32.62906 -31.93799 -28.77013 -28.55318 -26.45380 -25.28723 -24.51092 -23.38462 -23.29067 -21.36169 -21.15017 -20.24208 -19.96387 -19.03414 -18.56305 -17.73882 -17.06998 -16.91896 -16.63726 -16.13552 -15.96048 -15.88784 -15.82271 -15.68004 -15.51384 -15.00246 -14.95612 -14.56617 -14.43039 -13.99345 -13.86487 -13.66009 -13.46772 -13.23936 -12.95420 -12.78803 -12.66484 -12.53450 -12.40550 -12.39311 -12.36658 -12.17754 -11.96602 -11.74364 -11.49620 -11.35129 -11.18914 -11.05671 -10.94315 -10.69295 -10.42162 -10.24028 -9.69544 -9.23699 -8.40222 -6.01441 1.31209 1.37018 1.42372 1.46333 1.87654 1.97380 2.24538 2.69305 2.73589 2.79950 3.16183 3.30223 3.37055 3.52876 3.75140 3.77252 3.83902 3.98761 4.03676 4.12161 4.18912 4.27043 4.34582 4.41284 4.45826 4.50065 4.56514 4.63525 4.63723 4.73717 4.74409 4.77146 4.79572 4.85833 4.92720 4.97147 4.97317 5.00907 5.02599 5.14505 5.24540 5.26247 5.45716 5.54091 5.55246 5.92928 6.12335 6.35256 6.40598 6.61031 6.89402 7.13762 7.41045 7.98434 8.77518 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002197 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.452799 B =12739.293302 C =13353.659778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 N -0.676 5.676 4 C 0.061 3.939 5 C 0.447 3.553 6 O -0.617 6.617 7 N -0.590 5.590 8 C -0.329 4.329 9 H 0.052 0.948 10 C -0.018 4.018 11 N -0.936 5.936 12 Si 0.967 3.033 13 H -0.255 1.255 14 H -0.277 1.277 15 H -0.228 1.228 16 C -0.164 4.164 17 C 0.110 3.890 18 N -0.604 5.604 19 C 0.535 3.465 20 O -0.581 6.581 21 C -0.143 4.143 22 H 0.153 0.847 23 C -0.092 4.092 24 C -0.226 4.226 25 C -0.134 4.134 26 C -0.105 4.105 27 C 0.118 3.882 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.340 0.660 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.390 0.610 36 H 0.279 0.721 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -31.851 4.272 32.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 N -0.307 5.307 4 C -0.071 4.071 5 C 0.235 3.765 6 O -0.502 6.502 7 N -0.232 5.232 8 C -0.458 4.458 9 H 0.071 0.929 10 C -0.217 4.217 11 N -0.576 5.576 12 Si 0.786 3.214 13 H -0.180 1.180 14 H -0.202 1.202 15 H -0.151 1.151 16 C -0.203 4.203 17 C -0.012 4.012 18 N -0.336 5.336 19 C 0.325 3.675 20 O -0.462 6.462 21 C -0.164 4.164 22 H 0.170 0.830 23 C -0.129 4.129 24 C -0.227 4.227 25 C -0.171 4.171 26 C -0.141 4.141 27 C -0.005 4.005 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.226 0.774 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.734 -31.411 2.762 32.049 hybrid contribution 0.500 0.594 0.831 1.137 sum -5.234 -30.817 3.593 31.464 Atomic orbital electron populations 1.22025 0.92479 1.02788 1.02847 1.20997 0.96491 0.85731 0.94227 1.60266 1.16935 1.13520 1.39962 1.21707 1.02343 0.89099 0.93986 1.21092 0.83799 0.88956 0.82661 1.90550 1.42915 1.79623 1.37070 1.42017 1.47962 1.10471 1.22749 1.18993 1.30563 0.87378 1.08878 0.92946 1.26176 0.99268 0.94799 1.01410 1.69815 1.46367 1.06204 1.35246 0.85342 0.78819 0.79515 0.77697 1.17974 1.20214 1.15120 1.22696 1.01140 0.96647 0.99862 1.21989 1.01769 0.92245 0.85188 1.48160 1.56662 1.20538 1.08287 1.20238 0.76369 0.80538 0.90359 1.90666 1.55660 1.64919 1.34920 1.22068 0.98715 0.98806 0.96793 0.83005 1.22731 0.90813 0.96130 1.03257 1.21441 1.05628 0.86410 1.09200 1.22592 1.02459 0.98629 0.93384 1.22854 1.03682 0.91364 0.96249 1.21587 1.00816 0.91760 0.86360 1.21820 1.00168 0.94658 0.98543 0.92703 0.90100 0.91404 0.84117 0.90069 0.86635 0.77407 0.91184 0.92345 0.88636 0.88735 0.87453 0.89692 0.84893 0.89901 0.88452 0.86577 0.87537 0.89287 0.90779 0.90199 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.48 71.98 0.54 -1.72 16 2 C 0.12 2.19 0.71 3.55 0.00 2.20 16 3 N -0.68 -18.76 5.71 -474.02 -2.71 -21.47 16 4 C 0.06 1.71 5.38 85.56 0.46 2.17 16 5 C 0.45 19.70 7.82 87.66 0.69 20.39 16 6 O -0.62 -34.15 15.78 -3.05 -0.05 -34.20 16 7 N -0.59 -27.17 5.09 -306.99 -1.56 -28.73 16 8 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 9 H 0.05 3.67 7.39 -2.92 -0.02 3.64 16 10 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 11 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 12 Si 0.97 37.74 27.73 68.60 1.90 39.64 16 13 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 14 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 15 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 16 C -0.16 -2.36 4.70 30.67 0.14 -2.21 16 17 C 0.11 1.18 5.83 86.36 0.50 1.68 16 18 N -0.60 -10.11 2.97 -818.91 -2.43 -12.55 16 19 C 0.54 11.19 7.48 87.66 0.66 11.84 16 20 O -0.58 -17.08 15.66 -3.05 -0.05 -17.13 16 21 C -0.14 -2.07 4.96 -11.54 -0.06 -2.13 16 22 H 0.15 1.28 6.82 -2.39 -0.02 1.27 16 23 C -0.09 -1.23 10.24 30.62 0.31 -0.91 16 24 C -0.23 -3.49 5.06 -52.16 -0.26 -3.75 16 25 C -0.13 -2.19 10.16 30.60 0.31 -1.88 16 26 C -0.10 -1.14 10.53 30.60 0.32 -0.82 16 27 C 0.12 2.13 5.96 86.36 0.52 2.64 16 28 C -0.11 -2.27 5.17 30.67 0.16 -2.11 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.93 4.98 -2.39 -0.01 0.92 16 31 H 0.07 0.96 6.40 -2.39 -0.02 0.95 16 32 H 0.34 10.62 8.42 -89.70 -0.76 9.86 16 33 H 0.08 1.79 6.27 -2.39 -0.01 1.77 16 34 H 0.12 2.75 6.30 -2.39 -0.02 2.74 16 35 H 0.39 14.57 5.76 -92.70 -0.53 14.04 16 36 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.10 1.15 6.33 -2.39 -0.02 1.14 16 39 H 0.09 0.70 6.69 -2.39 -0.02 0.69 16 40 H 0.11 0.73 5.68 -2.39 -0.01 0.72 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 45 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.31 6.69 -2.39 -0.02 1.29 16 48 H 0.07 1.65 7.01 -2.38 -0.02 1.63 16 49 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -82.64 389.25 0.65 -81.99 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.36 Total: 41.77 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.61 Total: 6.59 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.40 Total: -118.66 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.10 Total: -51.32 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.90 Total: 39.64 kcal Total: -82.64 0.65 -81.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484924680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.726 kcal (2) G-P(sol) polarization free energy of solvation -82.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds