Wall clock time and date at job start Tue Mar 31 2020 19:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53050 * 109.45930 * 2 1 4 4 C 1.53189 * 109.31278 * 178.62684 * 3 2 1 5 5 N 1.46930 * 108.77622 * 54.63755 * 4 3 2 6 6 C 1.34777 * 120.62884 * 126.36599 * 5 4 3 7 7 O 1.21348 * 119.99974 * 351.64037 * 6 5 4 8 8 C 1.49455 * 119.99607 * 171.91531 * 6 5 4 9 9 O 1.21347 * 119.99859 * 353.45166 * 8 6 5 10 10 N 1.34775 * 119.99689 * 173.46167 * 8 6 5 11 11 C 1.46505 * 119.99790 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.46729 * 179.97438 * 11 10 8 13 13 H 1.08994 * 115.51867 * 330.41422 * 12 11 10 14 14 C 1.53008 * 117.43843 * 185.00151 * 12 11 10 15 15 H 1.08994 * 119.53694 * 4.11753 * 14 12 11 16 16 C 1.54388 * 118.11962 * 160.80959 * 14 12 11 17 17 N 1.48146 * 104.61655 * 87.19259 * 16 14 12 18 18 C 1.36937 * 127.83647 * 140.39618 * 17 16 14 19 19 H 1.08001 * 119.99892 * 196.47954 * 18 17 16 20 20 C 1.38808 * 120.00117 * 16.47809 * 18 17 16 21 21 N 1.31622 * 120.00323 * 6.09632 * 20 18 17 22 22 Si 1.86806 * 119.99785 * 186.09642 * 20 18 17 23 23 H 1.48502 * 109.47246 * 94.97133 * 22 20 18 24 24 H 1.48502 * 109.47020 * 214.96702 * 22 20 18 25 25 H 1.48495 * 109.47387 * 334.97101 * 22 20 18 26 26 C 1.48144 * 104.32423 * 320.41011 * 17 16 14 27 27 C 1.53001 * 117.44154 * 115.76654 * 12 11 10 28 28 H 1.08999 * 119.53839 * 355.87282 * 27 12 11 29 29 C 1.46930 * 118.73502 * 306.64343 * 5 4 3 30 30 C 1.52753 * 109.00887 * 53.30927 * 29 5 4 31 31 H 1.09001 * 109.47281 * 60.00410 * 1 2 3 32 32 H 1.09000 * 109.46738 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47609 * 299.99610 * 1 2 3 34 34 H 1.08997 * 109.46020 * 119.97094 * 2 1 3 35 35 H 1.09004 * 109.49075 * 58.67946 * 3 2 1 36 36 H 1.08994 * 109.52336 * 298.59865 * 3 2 1 37 37 H 1.08998 * 109.58850 * 294.85298 * 4 3 2 38 38 H 1.09001 * 109.70191 * 174.49653 * 4 3 2 39 39 H 0.97000 * 120.00013 * 359.97438 * 10 8 6 40 40 H 1.09000 * 109.47242 * 299.99795 * 11 10 8 41 41 H 1.09006 * 109.46812 * 59.99869 * 11 10 8 42 42 H 1.09004 * 110.40715 * 205.97623 * 16 14 12 43 43 H 1.08997 * 110.40871 * 328.40208 * 16 14 12 44 44 H 0.97000 * 120.00010 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.40459 * 280.80630 * 26 17 16 46 46 H 1.08992 * 110.50534 * 158.42118 * 26 17 16 47 47 H 1.09007 * 109.58145 * 173.14667 * 29 5 4 48 48 H 1.09004 * 109.58440 * 293.56256 * 29 5 4 49 49 H 1.09001 * 109.56337 * 185.55077 * 30 29 5 50 50 H 1.09000 * 109.39069 * 65.51747 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4431 0.0000 4 6 3.5713 1.4393 0.0346 5 7 4.0676 0.6240 -1.0824 6 6 4.9609 1.1282 -1.9566 7 8 5.2486 2.3064 -1.9186 8 6 5.5926 0.2372 -2.9769 9 8 5.3936 -0.9594 -2.9439 10 7 6.3834 0.7628 -3.9333 11 6 7.0031 -0.1106 -4.9330 12 6 7.8434 0.7315 -5.8951 13 1 7.4970 1.7533 -6.0500 14 6 8.4807 0.0146 -7.0873 15 1 8.2682 -1.0410 -7.2557 16 6 8.9366 0.8678 -8.2905 17 7 10.3166 1.2859 -7.9508 18 6 11.3980 1.3720 -8.7866 19 1 12.3949 1.4308 -8.3754 20 6 11.2128 1.3836 -10.1622 21 7 9.9962 1.4331 -10.6621 22 14 12.6902 1.3290 -11.3040 23 1 12.9528 -0.0760 -11.7070 24 1 12.4127 2.1468 -12.5121 25 1 13.8797 1.8727 -10.6008 26 6 10.2615 1.5894 -6.5019 27 6 9.3542 0.4904 -5.9079 28 1 9.7925 -0.2109 -5.1979 29 6 3.5668 -0.7492 -1.2318 30 6 2.0396 -0.7227 -1.2490 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8931 -0.5134 0.8903 35 1 1.6573 1.9639 0.8778 36 1 1.6975 1.9503 -0.9019 37 1 3.9144 1.0143 0.9779 38 1 3.9436 2.4590 -0.0635 39 1 6.5423 1.7193 -3.9597 40 1 7.6424 -0.8384 -4.4334 41 1 6.2258 -0.6325 -5.4914 42 1 8.9339 0.2708 -9.2025 43 1 8.2923 1.7397 -8.4041 44 1 9.8668 1.4416 -11.6234 45 1 9.8242 2.5739 -6.3362 46 1 11.2578 1.5380 -6.0629 47 1 3.9342 -1.1724 -2.1667 48 1 3.9097 -1.3563 -0.3939 49 1 1.6570 -1.7433 -1.2603 50 1 1.6968 -0.1960 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485620180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:39 Heat of formation + Delta-G solvation = -5.368074 kcal Electronic energy + Delta-G solvation = -28594.671201 eV Core-core repulsion = 24623.817785 eV Total energy + Delta-G solvation = -3970.853417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.18271 -39.36757 -38.66629 -38.02173 -35.42147 -34.18108 -33.33086 -31.55966 -30.89879 -28.97792 -27.82643 -27.13413 -25.57194 -24.42995 -23.72964 -22.50896 -21.21322 -20.98060 -20.27360 -19.53415 -19.27107 -17.88767 -17.23729 -16.83062 -16.32448 -15.94243 -15.42592 -15.16700 -14.90260 -14.79772 -14.61336 -14.41378 -14.07170 -13.93804 -13.69363 -13.53988 -13.17910 -12.97631 -12.78900 -12.68238 -12.31947 -12.23659 -11.90384 -11.76400 -11.62362 -11.29353 -11.26205 -11.12427 -10.87632 -10.84237 -10.82289 -10.68292 -10.31551 -10.13388 -9.77494 -9.55870 -9.49002 -9.13185 -9.10162 -9.02737 -8.65786 -6.87096 -5.80636 -3.16426 1.21257 2.09371 2.98000 3.25153 3.37441 3.42849 3.44944 4.03651 4.18088 4.32437 4.34675 4.40888 4.45195 4.69052 4.80551 4.88871 4.99171 5.09651 5.21654 5.22305 5.22932 5.34969 5.37057 5.40983 5.42605 5.45013 5.52317 5.58247 5.59675 5.68685 5.73913 5.76240 5.79955 5.86488 5.93730 5.98405 6.02304 6.20168 6.26728 6.52243 6.63850 6.69141 6.77098 6.90306 7.07863 7.34581 7.52837 7.53190 7.70995 7.80391 8.20676 9.10233 9.72473 10.49578 11.33287 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.001760 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.541657 B =15901.357105 C =16110.611785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.106 3.894 5 N -0.582 5.582 6 C 0.509 3.491 7 O -0.521 6.521 8 C 0.506 3.494 9 O -0.517 6.517 10 N -0.687 5.687 11 C 0.152 3.848 12 C -0.154 4.154 13 H 0.105 0.895 14 C -0.159 4.159 15 H 0.104 0.896 16 C 0.182 3.818 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.153 3.847 27 C -0.170 4.170 28 H 0.104 0.896 29 C 0.067 3.933 30 C -0.131 4.131 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.023 0.977 44 H 0.254 0.746 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.143 0.857 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.202 -3.852 22.405 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.167 4.167 4 C -0.016 4.016 5 N -0.316 5.316 6 C 0.291 3.709 7 O -0.397 6.397 8 C 0.287 3.713 9 O -0.396 6.396 10 N -0.338 5.338 11 C 0.029 3.971 12 C -0.173 4.173 13 H 0.123 0.877 14 C -0.180 4.180 15 H 0.122 0.878 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.190 4.190 28 H 0.122 0.878 29 C -0.054 4.054 30 C -0.169 4.169 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.252 0.748 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.160 0.840 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.048 -4.033 22.146 28.852 hybrid contribution 0.663 0.347 -0.446 0.871 sum -17.385 -3.687 21.700 28.048 Atomic orbital electron populations 1.21822 0.94914 1.01839 1.01831 1.21176 0.95854 0.95817 0.98600 1.21975 0.94635 0.97048 1.02993 1.21747 0.94255 0.97182 0.88385 1.47939 1.41077 1.15541 1.27075 1.20143 0.80590 0.87666 0.82454 1.90765 1.61849 1.15783 1.71287 1.20066 0.80543 0.88127 0.82520 1.90481 1.60001 1.15417 1.73693 1.45918 1.46741 1.12940 1.28242 1.21068 0.96084 0.91881 0.88055 1.22534 0.94375 1.00355 1.00044 0.87673 1.24261 1.01579 0.99982 0.92136 0.87785 1.21107 0.84801 0.94799 0.93622 1.45196 1.07048 1.76349 1.03188 1.19022 0.85418 1.44171 0.86876 0.90557 1.24924 0.96818 1.01626 0.96899 1.69876 1.19092 1.55837 1.11479 0.86076 0.81565 0.77536 0.80433 1.21533 1.21634 1.20487 1.21147 0.96159 0.93479 0.86534 1.24006 0.90182 1.03107 1.01724 0.87845 1.22819 0.93861 0.81337 1.07373 1.21951 0.95442 1.01284 0.98201 0.92651 0.92546 0.92667 0.90971 0.90518 0.91299 0.91005 0.88675 0.74838 0.90703 0.90363 0.88912 0.95860 0.93547 0.95732 0.93147 0.84019 0.91397 0.90411 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.15 0.34 -0.39 16 2 C -0.10 -0.55 2.68 -90.58 -0.24 -0.80 16 3 C -0.13 -0.80 5.36 -26.61 -0.14 -0.94 16 4 C 0.11 0.83 6.45 -3.71 -0.02 0.80 16 5 N -0.58 -5.67 2.98 -173.53 -0.52 -6.19 16 6 C 0.51 6.12 7.73 -11.58 -0.09 6.03 16 7 O -0.52 -7.29 15.92 5.50 0.09 -7.20 16 8 C 0.51 6.27 7.75 -11.58 -0.09 6.18 16 9 O -0.52 -6.92 13.17 5.50 0.07 -6.85 16 10 N -0.69 -8.22 5.55 -60.72 -0.34 -8.56 16 11 C 0.15 1.92 5.95 -4.04 -0.02 1.89 16 12 C -0.15 -2.29 5.39 -90.62 -0.49 -2.78 16 13 H 0.11 1.59 8.04 -51.93 -0.42 1.17 16 14 C -0.16 -2.91 6.85 -89.22 -0.61 -3.52 16 15 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.18 4.31 5.70 -2.41 -0.01 4.29 16 17 N -0.59 -15.11 3.38 -168.86 -0.57 -15.68 16 18 C -0.23 -6.29 10.36 -15.06 -0.16 -6.45 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.43 -17.43 -0.09 -0.25 16 21 N -0.92 -26.64 10.79 55.49 0.60 -26.05 16 22 Si 0.91 21.85 29.56 -169.99 -5.02 16.82 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.17 7.04 -2.41 -0.02 3.16 16 27 C -0.17 -2.93 6.74 -89.22 -0.60 -3.53 16 28 H 0.10 1.63 8.12 -51.93 -0.42 1.21 16 29 C 0.07 0.57 5.96 -3.93 -0.02 0.55 16 30 C -0.13 -0.88 5.34 -26.84 -0.14 -1.02 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.84 7.00 -51.93 -0.36 0.48 16 39 H 0.41 4.73 7.89 -40.82 -0.32 4.41 16 40 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 2.46 6.47 -51.93 -0.34 2.12 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.14 1.46 4.29 -54.91 -0.24 1.22 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -31.03 394.63 -10.56 -41.59 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.40 Total: 2.96 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.42 Total: 3.21 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.83 Total: -56.48 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.16 Total: -14.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.03 -10.56 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485620180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.225 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds