Wall clock time and date at job start Tue Mar 31 2020 19:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53050 * 109.45930 * 2 1 4 4 C 1.53189 * 109.31278 * 178.62684 * 3 2 1 5 5 N 1.46930 * 108.77622 * 54.63755 * 4 3 2 6 6 C 1.34777 * 120.62884 * 126.36599 * 5 4 3 7 7 O 1.21348 * 119.99974 * 351.64037 * 6 5 4 8 8 C 1.49455 * 119.99607 * 171.91531 * 6 5 4 9 9 O 1.21347 * 119.99859 * 353.45166 * 8 6 5 10 10 N 1.34775 * 119.99689 * 173.46167 * 8 6 5 11 11 C 1.46505 * 119.99790 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.46729 * 179.97438 * 11 10 8 13 13 H 1.08994 * 115.51867 * 330.41422 * 12 11 10 14 14 C 1.53008 * 117.43843 * 185.00151 * 12 11 10 15 15 H 1.08994 * 119.53694 * 4.11753 * 14 12 11 16 16 C 1.54388 * 118.11962 * 160.80959 * 14 12 11 17 17 N 1.48146 * 104.61655 * 87.19259 * 16 14 12 18 18 C 1.36937 * 127.83647 * 140.39618 * 17 16 14 19 19 H 1.08001 * 119.99892 * 196.47954 * 18 17 16 20 20 C 1.38808 * 120.00117 * 16.47809 * 18 17 16 21 21 N 1.31622 * 120.00323 * 6.09632 * 20 18 17 22 22 Si 1.86806 * 119.99785 * 186.09642 * 20 18 17 23 23 H 1.48502 * 109.47246 * 94.97133 * 22 20 18 24 24 H 1.48502 * 109.47020 * 214.96702 * 22 20 18 25 25 H 1.48495 * 109.47387 * 334.97101 * 22 20 18 26 26 C 1.48144 * 104.32423 * 320.41011 * 17 16 14 27 27 C 1.53001 * 117.44154 * 115.76654 * 12 11 10 28 28 H 1.08999 * 119.53839 * 355.87282 * 27 12 11 29 29 C 1.46930 * 118.73502 * 306.64343 * 5 4 3 30 30 C 1.52753 * 109.00887 * 53.30927 * 29 5 4 31 31 H 1.09001 * 109.47281 * 60.00410 * 1 2 3 32 32 H 1.09000 * 109.46738 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47609 * 299.99610 * 1 2 3 34 34 H 1.08997 * 109.46020 * 119.97094 * 2 1 3 35 35 H 1.09004 * 109.49075 * 58.67946 * 3 2 1 36 36 H 1.08994 * 109.52336 * 298.59865 * 3 2 1 37 37 H 1.08998 * 109.58850 * 294.85298 * 4 3 2 38 38 H 1.09001 * 109.70191 * 174.49653 * 4 3 2 39 39 H 0.97000 * 120.00013 * 359.97438 * 10 8 6 40 40 H 1.09000 * 109.47242 * 299.99795 * 11 10 8 41 41 H 1.09006 * 109.46812 * 59.99869 * 11 10 8 42 42 H 1.09004 * 110.40715 * 205.97623 * 16 14 12 43 43 H 1.08997 * 110.40871 * 328.40208 * 16 14 12 44 44 H 0.97000 * 120.00010 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.40459 * 280.80630 * 26 17 16 46 46 H 1.08992 * 110.50534 * 158.42118 * 26 17 16 47 47 H 1.09007 * 109.58145 * 173.14667 * 29 5 4 48 48 H 1.09004 * 109.58440 * 293.56256 * 29 5 4 49 49 H 1.09001 * 109.56337 * 185.55077 * 30 29 5 50 50 H 1.09000 * 109.39069 * 65.51747 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4431 0.0000 4 6 3.5713 1.4393 0.0346 5 7 4.0676 0.6240 -1.0824 6 6 4.9609 1.1282 -1.9566 7 8 5.2486 2.3064 -1.9186 8 6 5.5926 0.2372 -2.9769 9 8 5.3936 -0.9594 -2.9439 10 7 6.3834 0.7628 -3.9333 11 6 7.0031 -0.1106 -4.9330 12 6 7.8434 0.7315 -5.8951 13 1 7.4970 1.7533 -6.0500 14 6 8.4807 0.0146 -7.0873 15 1 8.2682 -1.0410 -7.2557 16 6 8.9366 0.8678 -8.2905 17 7 10.3166 1.2859 -7.9508 18 6 11.3980 1.3720 -8.7866 19 1 12.3949 1.4308 -8.3754 20 6 11.2128 1.3836 -10.1622 21 7 9.9962 1.4331 -10.6621 22 14 12.6902 1.3290 -11.3040 23 1 12.9528 -0.0760 -11.7070 24 1 12.4127 2.1468 -12.5121 25 1 13.8797 1.8727 -10.6008 26 6 10.2615 1.5894 -6.5019 27 6 9.3542 0.4904 -5.9079 28 1 9.7925 -0.2109 -5.1979 29 6 3.5668 -0.7492 -1.2318 30 6 2.0396 -0.7227 -1.2490 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8931 -0.5134 0.8903 35 1 1.6573 1.9639 0.8778 36 1 1.6975 1.9503 -0.9019 37 1 3.9144 1.0143 0.9779 38 1 3.9436 2.4590 -0.0635 39 1 6.5423 1.7193 -3.9597 40 1 7.6424 -0.8384 -4.4334 41 1 6.2258 -0.6325 -5.4914 42 1 8.9339 0.2708 -9.2025 43 1 8.2923 1.7397 -8.4041 44 1 9.8668 1.4416 -11.6234 45 1 9.8242 2.5739 -6.3362 46 1 11.2578 1.5380 -6.0629 47 1 3.9342 -1.1724 -2.1667 48 1 3.9097 -1.3563 -0.3939 49 1 1.6570 -1.7433 -1.2603 50 1 1.6968 -0.1960 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485620180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:37 Heat of formation + Delta-G solvation = -24.284964 kcal Electronic energy + Delta-G solvation = -28595.491499 eV Core-core repulsion = 24623.817785 eV Total energy + Delta-G solvation = -3971.673715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.07026 -40.58929 -39.80504 -38.82706 -36.58540 -35.27185 -34.67476 -32.73604 -32.15734 -29.71354 -29.09173 -28.83630 -27.09926 -25.47876 -24.34170 -23.39288 -22.69554 -21.98468 -21.33027 -20.84997 -20.41848 -18.88028 -18.70925 -18.14887 -17.23441 -17.01678 -16.75998 -16.31593 -15.87555 -15.79439 -15.58338 -15.26872 -15.15812 -15.05683 -14.69428 -14.57901 -14.40561 -14.33877 -14.05164 -13.68087 -13.36296 -13.17964 -12.89441 -12.80598 -12.73921 -12.71614 -12.58096 -12.31914 -12.18988 -11.98062 -11.94177 -11.84809 -11.77449 -11.47522 -11.33668 -10.97122 -10.75459 -10.63240 -10.32965 -10.10417 -9.82283 -8.89893 -7.91488 -5.29334 0.27436 1.22107 1.46442 1.47849 1.57283 2.04695 2.37099 2.47302 2.73330 3.21858 3.27334 3.57163 3.70662 3.80621 3.84091 3.84787 3.88473 4.11267 4.16487 4.26450 4.32726 4.40971 4.42513 4.53971 4.56759 4.61543 4.68625 4.74696 4.76311 4.82288 4.89905 4.92383 4.95285 5.02557 5.06205 5.07409 5.16153 5.20987 5.31776 5.35952 5.36623 5.45007 5.47292 5.51984 5.54079 5.68034 5.92943 6.17905 6.19172 6.63527 6.86890 7.01545 7.68088 8.46523 9.21767 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.001760 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.541657 B =15901.357105 C =16110.611785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.123 4.123 4 C 0.102 3.898 5 N -0.577 5.577 6 C 0.505 3.495 7 O -0.548 6.548 8 C 0.508 3.492 9 O -0.527 6.527 10 N -0.685 5.685 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.104 0.896 14 C -0.169 4.169 15 H 0.120 0.880 16 C 0.186 3.814 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.146 3.854 27 C -0.161 4.161 28 H 0.128 0.872 29 C 0.066 3.934 30 C -0.127 4.127 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.418 0.582 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.000 1.000 44 H 0.250 0.750 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -4.863 24.814 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.161 4.161 4 C -0.020 4.020 5 N -0.309 5.309 6 C 0.288 3.712 7 O -0.427 6.427 8 C 0.290 3.710 9 O -0.406 6.406 10 N -0.337 5.337 11 C 0.039 3.961 12 C -0.136 4.136 13 H 0.122 0.878 14 C -0.190 4.190 15 H 0.138 0.862 16 C 0.061 3.939 17 N -0.345 5.345 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.021 3.979 27 C -0.181 4.181 28 H 0.146 0.854 29 C -0.054 4.054 30 C -0.165 4.165 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.018 0.982 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.144 0.856 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.735 -5.058 24.609 31.340 hybrid contribution 0.820 0.680 -1.125 1.549 sum -17.915 -4.378 23.484 29.860 Atomic orbital electron populations 1.21795 0.94206 1.02242 1.01919 1.21171 0.96382 0.95240 0.98351 1.21954 0.93336 0.97623 1.03219 1.21934 0.95337 0.96390 0.88289 1.48113 1.39939 1.16180 1.26708 1.20107 0.81069 0.87285 0.82778 1.90753 1.63089 1.16643 1.72168 1.20136 0.80379 0.88023 0.82510 1.90501 1.60320 1.15768 1.74029 1.45845 1.46665 1.13058 1.28093 1.20924 0.96013 0.91366 0.87771 1.22421 0.93144 1.00196 0.97806 0.87766 1.23936 1.04204 1.00173 0.90640 0.86202 1.20846 0.84295 0.94096 0.94692 1.45521 1.07023 1.76964 1.04976 1.19402 0.86459 1.43422 0.87702 0.90215 1.25765 0.99480 1.01980 0.98411 1.70079 1.21043 1.57169 1.11262 0.85032 0.78704 0.77333 0.78070 1.21236 1.22036 1.19153 1.21298 0.97528 0.94669 0.84376 1.23940 0.90862 1.01993 1.01268 0.85389 1.22836 0.95016 0.80616 1.06966 1.21929 0.94058 1.02163 0.98338 0.93315 0.92006 0.91858 0.89934 0.88650 0.92661 0.89160 0.89945 0.74466 0.89867 0.89615 0.92519 0.98235 0.94109 0.95816 0.92526 0.85623 0.90186 0.89043 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 2 C -0.09 -0.85 2.68 -10.77 -0.03 -0.88 16 3 C -0.12 -1.30 5.36 30.67 0.16 -1.13 16 4 C 0.10 1.42 6.45 86.36 0.56 1.98 16 5 N -0.58 -10.48 2.98 -821.30 -2.45 -12.93 16 6 C 0.51 11.71 7.73 87.27 0.68 12.39 16 7 O -0.55 -15.11 15.92 -3.24 -0.05 -15.17 16 8 C 0.51 11.88 7.75 87.27 0.68 12.56 16 9 O -0.53 -13.25 13.17 -3.24 -0.04 -13.30 16 10 N -0.68 -15.22 5.55 -464.40 -2.58 -17.79 16 11 C 0.16 3.69 5.95 86.38 0.51 4.20 16 12 C -0.12 -3.27 5.39 -10.79 -0.06 -3.32 16 13 H 0.10 3.02 8.04 -2.39 -0.02 3.00 16 14 C -0.17 -6.06 6.85 -9.88 -0.07 -6.12 16 15 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 16 C 0.19 9.08 5.70 86.53 0.49 9.57 16 17 N -0.62 -32.13 3.38 -688.16 -2.33 -34.46 16 18 C -0.24 -13.59 10.36 84.03 0.87 -12.72 16 19 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 20 C -0.06 -3.57 5.43 84.86 0.46 -3.11 16 21 N -0.95 -57.03 10.79 21.65 0.23 -56.80 16 22 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 C 0.15 6.00 7.04 86.54 0.61 6.61 16 27 C -0.16 -5.25 6.74 -9.89 -0.07 -5.32 16 28 H 0.13 3.62 8.12 -2.39 -0.02 3.60 16 29 C 0.07 1.01 5.96 86.22 0.51 1.53 16 30 C -0.13 -1.47 5.34 30.53 0.16 -1.31 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.39 7.00 -2.39 -0.02 1.37 16 39 H 0.42 8.94 7.89 -92.71 -0.73 8.21 16 40 H 0.08 1.85 7.94 -2.39 -0.02 1.83 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.06 3.15 6.47 -2.38 -0.02 3.13 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 47 H 0.13 2.42 4.29 -49.67 -0.21 2.21 16 48 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.63 394.63 0.96 -67.67 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.00 Total: 20.69 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.14 Total: 14.46 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -7.11 Total: -121.98 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.09 Total: -28.46 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.63 0.96 -67.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485620180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.385 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds