Wall clock time and date at job start Tue Mar 31 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 110.34552 * 2 1 4 4 O 1.21276 * 119.99998 * 120.69802 * 3 2 1 5 5 N 1.34774 * 120.00121 * 300.70424 * 3 2 1 6 6 C 1.46496 * 120.00256 * 179.97438 * 5 3 2 7 7 H 1.09005 * 112.84598 * 23.80079 * 6 5 3 8 8 C 1.53782 * 113.61716 * 154.99642 * 6 5 3 9 9 C 1.53783 * 87.07724 * 89.11665 * 8 6 5 10 10 H 1.08994 * 113.61681 * 270.79563 * 9 8 6 11 11 C 1.53004 * 113.61089 * 139.98054 * 9 8 6 12 12 N 1.46901 * 109.46916 * 176.52727 * 11 9 8 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 O 1.21297 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07990 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99812 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99477 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 60.00193 * 21 19 17 23 23 H 1.48505 * 109.46659 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47203 * 299.99881 * 21 19 17 25 25 C 1.53776 * 87.17612 * 25.39335 * 9 8 6 26 26 C 1.51098 * 110.38719 * 237.71467 * 2 1 3 27 27 C 1.30729 * 110.99275 * 257.42451 * 26 2 1 28 28 C 1.51103 * 111.13437 * 0.15416 * 27 26 2 29 29 C 1.54629 * 110.38667 * 122.29116 * 2 1 3 30 30 H 1.09000 * 109.47660 * 59.29952 * 1 2 3 31 31 H 1.09006 * 109.47218 * 179.29446 * 1 2 3 32 32 H 1.08995 * 109.47379 * 299.29393 * 1 2 3 33 33 H 0.97000 * 119.99868 * 359.97438 * 5 3 2 34 34 H 1.09002 * 113.61361 * 334.57069 * 8 6 5 35 35 H 1.08999 * 113.69226 * 203.67422 * 8 6 5 36 36 H 1.09004 * 109.46889 * 56.53108 * 11 9 8 37 37 H 1.08995 * 109.47384 * 296.52748 * 11 9 8 38 38 H 1.00901 * 111.00067 * 303.95263 * 12 11 9 39 39 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 40 40 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 41 41 H 0.97009 * 119.99629 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00444 * 179.97438 * 20 19 17 43 43 H 1.09003 * 113.61658 * 89.15578 * 25 9 8 44 44 H 1.08994 * 113.61559 * 220.06257 * 25 9 8 45 45 H 1.08001 * 124.45008 * 77.49433 * 26 2 1 46 46 H 1.07999 * 124.41184 * 180.02562 * 27 26 2 47 47 H 1.08998 * 110.38367 * 224.65488 * 28 27 26 48 48 H 1.08997 * 110.38165 * 102.27825 * 28 27 26 49 49 H 1.09000 * 111.03396 * 212.32524 * 29 2 1 50 50 H 1.09001 * 111.03923 * 336.21608 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7675 1.7951 0.9031 5 7 1.7294 2.2521 -1.0035 6 6 2.2383 3.6258 -1.0033 7 1 3.1521 3.7385 -0.4198 8 6 2.3214 4.2523 -2.4053 9 6 0.8758 4.7311 -2.1910 10 1 0.1247 4.0118 -2.5173 11 6 0.6138 6.1437 -2.7172 12 7 -0.8064 6.4758 -2.5422 13 6 -1.0959 7.8280 -3.0380 14 6 -2.5586 8.1326 -2.8416 15 8 -3.2881 7.3050 -2.3376 16 7 -3.0562 9.3247 -3.2259 17 6 -4.3868 9.6021 -3.0467 18 1 -5.0363 8.8652 -2.5980 19 6 -4.8999 10.8311 -3.4434 20 7 -4.1096 11.7275 -3.9898 21 14 -6.7131 11.2087 -3.1998 22 1 -7.0451 11.1310 -1.7545 23 1 -7.0058 12.5754 -3.7017 24 1 -7.5295 10.2202 -3.9492 25 6 1.1632 4.6797 -0.6812 26 6 2.0563 -0.7565 -1.1974 27 6 2.4686 -1.9486 -0.8539 28 6 2.2816 -2.1842 0.6268 29 6 2.0686 -0.7743 1.2253 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3634 -1.0276 -0.0127 32 1 -0.3634 0.5028 0.8962 33 1 1.1589 1.9463 -1.7260 34 1 2.4246 3.5194 -3.2055 35 1 3.0440 5.0649 -2.4797 36 1 0.8701 6.1905 -3.7757 37 1 1.2246 6.8568 -2.1636 38 1 -1.3959 5.7919 -2.9927 39 1 -0.4968 8.5530 -2.4870 40 1 -0.8515 7.8860 -4.0987 41 1 -2.4726 9.9868 -3.6286 42 1 -4.4678 12.5852 -4.2671 43 1 1.5688 5.6093 -0.2820 44 1 0.3327 4.2914 -0.0917 45 1 2.0884 -0.3632 -2.2027 46 1 2.8860 -2.6711 -1.5396 47 1 3.1715 -2.6472 1.0530 48 1 1.4057 -2.8083 0.8043 49 1 3.0108 -0.3504 1.5727 50 1 1.3323 -0.7967 2.0287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485694101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:22 Heat of formation + Delta-G solvation = -41.263339 kcal Electronic energy + Delta-G solvation = -28012.048523 eV Core-core repulsion = 24039.638570 eV Total energy + Delta-G solvation = -3972.409952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01809 -39.51041 -38.23566 -37.66930 -35.23186 -33.88915 -33.37501 -31.44115 -31.20003 -29.36139 -28.45015 -26.06409 -25.82873 -25.50503 -23.85621 -22.65148 -21.87203 -20.24932 -19.61915 -19.27995 -19.02738 -17.86333 -17.49567 -16.42451 -16.02638 -15.86141 -15.62466 -15.27206 -15.00114 -14.61538 -14.57014 -14.20623 -13.99457 -13.72673 -13.67048 -13.33446 -13.19769 -12.96030 -12.64052 -12.51815 -12.47729 -12.20846 -12.07325 -11.76415 -11.67962 -11.60924 -11.53631 -11.47217 -11.23551 -11.01791 -10.95572 -10.58430 -10.43840 -10.31637 -10.20207 -10.06137 -9.49395 -9.35144 -9.21595 -8.43712 -8.02166 -7.94634 -6.41042 -3.81902 1.71058 2.43321 2.90201 3.20492 3.26015 3.30519 3.91969 4.02150 4.06108 4.13970 4.25602 4.33939 4.50555 4.56062 4.59826 4.72698 4.83203 4.88482 4.90621 5.11461 5.18049 5.21693 5.26451 5.27008 5.35068 5.42485 5.45744 5.48548 5.54082 5.56439 5.62213 5.68898 5.72409 5.77074 5.83225 5.88961 5.99240 5.99720 6.02611 6.04889 6.10759 6.28047 6.37350 6.46363 7.24641 7.25792 7.55511 7.68974 7.99253 8.06988 8.62211 9.18482 9.55188 10.06876 10.76639 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.001671 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.519378 B =16756.966197 C =17428.620430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C 0.531 3.469 4 O -0.538 6.538 5 N -0.708 5.708 6 C 0.115 3.885 7 H 0.100 0.900 8 C -0.140 4.140 9 C -0.104 4.104 10 H 0.088 0.912 11 C 0.069 3.931 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.133 4.133 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.104 4.104 29 C -0.107 4.107 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.347 0.653 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.401 -23.781 2.633 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C 0.317 3.683 4 O -0.414 6.414 5 N -0.359 5.359 6 C 0.009 3.991 7 H 0.118 0.882 8 C -0.179 4.179 9 C -0.123 4.123 10 H 0.107 0.893 11 C -0.061 4.061 12 N -0.299 5.299 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.172 4.172 26 C -0.180 4.180 27 C -0.167 4.167 28 C -0.141 4.141 29 C -0.145 4.145 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.448 -23.638 4.219 29.105 hybrid contribution -0.828 0.557 -1.712 1.982 sum 15.620 -23.081 2.508 27.982 Atomic orbital electron populations 1.21772 0.91345 1.03103 1.02895 1.20700 0.97362 0.91949 0.96149 1.20428 0.79766 0.86774 0.81352 1.90680 1.37404 1.77443 1.35878 1.45663 1.52360 1.11808 1.26035 1.21956 0.98305 0.80910 0.97911 0.88165 1.23350 0.97705 1.00553 0.96286 1.22548 0.95985 0.96947 0.96832 0.89341 1.21969 0.90347 0.95624 0.98153 1.60063 1.03673 1.03102 1.63089 1.21670 0.96622 0.91899 0.98033 1.19830 0.88813 0.83951 0.84793 1.90519 1.60154 1.47871 1.48246 1.41863 1.10158 1.13789 1.54255 1.19659 0.84797 1.00438 1.38094 0.87990 1.25260 1.00278 0.95500 0.96882 1.69600 1.36068 1.07211 1.41465 0.85916 0.82089 0.77326 0.78866 1.19887 1.20975 1.19941 1.23386 0.98671 0.98833 0.96299 1.23089 1.00951 0.96222 0.97718 1.23398 0.98786 0.97267 0.97252 1.21426 1.02112 0.97594 0.92946 1.22502 1.02797 0.93629 0.95533 0.91834 0.91208 0.91548 0.76520 0.91098 0.88634 0.95568 0.90962 0.83377 0.89685 0.94014 0.77467 0.91833 0.89075 0.90908 0.85383 0.85394 0.90752 0.90343 0.89270 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.39 37.16 0.31 -0.59 16 2 C -0.06 -0.46 0.73 -155.76 -0.11 -0.58 16 3 C 0.53 5.58 6.54 -10.99 -0.07 5.50 16 4 O -0.54 -7.71 15.09 5.56 0.08 -7.62 16 5 N -0.71 -6.12 5.11 -52.93 -0.27 -6.39 16 6 C 0.11 1.07 4.33 -67.03 -0.29 0.78 16 7 H 0.10 1.08 7.46 -51.93 -0.39 0.69 16 8 C -0.14 -1.09 7.39 -25.92 -0.19 -1.28 16 9 C -0.10 -1.01 3.77 -89.81 -0.34 -1.35 16 10 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 11 C 0.07 0.80 5.51 -3.82 -0.02 0.78 16 12 N -0.67 -10.63 6.13 -115.05 -0.70 -11.34 16 13 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 14 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 15 O -0.58 -15.98 15.78 5.54 0.09 -15.89 16 16 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 17 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 21 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 C -0.13 -1.42 7.44 -25.83 -0.19 -1.61 16 26 C -0.16 -1.08 9.36 -35.76 -0.33 -1.41 16 27 C -0.15 -0.91 10.78 -35.75 -0.39 -1.29 16 28 C -0.10 -0.62 6.81 -26.83 -0.18 -0.81 16 29 C -0.11 -0.85 6.00 -25.02 -0.15 -1.00 16 30 H 0.06 0.39 7.59 -51.93 -0.39 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.40 2.63 8.13 -40.82 -0.33 2.30 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.88 7.02 -51.93 -0.36 0.51 16 50 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 408.86 15.07 6.16 6.16 Total: -1.00 -33.45 408.86 -9.68 -43.14 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -8.37 Total: 13.84 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.32 Total: 0.35 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.31 Total: -56.09 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.45 -9.68 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485694101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.872 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds