Wall clock time and date at job start Tue Mar 31 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 110.34552 * 2 1 4 4 O 1.21276 * 119.99998 * 120.69802 * 3 2 1 5 5 N 1.34774 * 120.00121 * 300.70424 * 3 2 1 6 6 C 1.46496 * 120.00256 * 179.97438 * 5 3 2 7 7 H 1.09005 * 112.84598 * 23.80079 * 6 5 3 8 8 C 1.53782 * 113.61716 * 154.99642 * 6 5 3 9 9 C 1.53783 * 87.07724 * 89.11665 * 8 6 5 10 10 H 1.08994 * 113.61681 * 270.79563 * 9 8 6 11 11 C 1.53004 * 113.61089 * 139.98054 * 9 8 6 12 12 N 1.46901 * 109.46916 * 176.52727 * 11 9 8 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 O 1.21297 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07990 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99812 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99477 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 60.00193 * 21 19 17 23 23 H 1.48505 * 109.46659 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47203 * 299.99881 * 21 19 17 25 25 C 1.53776 * 87.17612 * 25.39335 * 9 8 6 26 26 C 1.51098 * 110.38719 * 237.71467 * 2 1 3 27 27 C 1.30729 * 110.99275 * 257.42451 * 26 2 1 28 28 C 1.51103 * 111.13437 * 0.15416 * 27 26 2 29 29 C 1.54629 * 110.38667 * 122.29116 * 2 1 3 30 30 H 1.09000 * 109.47660 * 59.29952 * 1 2 3 31 31 H 1.09006 * 109.47218 * 179.29446 * 1 2 3 32 32 H 1.08995 * 109.47379 * 299.29393 * 1 2 3 33 33 H 0.97000 * 119.99868 * 359.97438 * 5 3 2 34 34 H 1.09002 * 113.61361 * 334.57069 * 8 6 5 35 35 H 1.08999 * 113.69226 * 203.67422 * 8 6 5 36 36 H 1.09004 * 109.46889 * 56.53108 * 11 9 8 37 37 H 1.08995 * 109.47384 * 296.52748 * 11 9 8 38 38 H 1.00901 * 111.00067 * 303.95263 * 12 11 9 39 39 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 40 40 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 41 41 H 0.97009 * 119.99629 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00444 * 179.97438 * 20 19 17 43 43 H 1.09003 * 113.61658 * 89.15578 * 25 9 8 44 44 H 1.08994 * 113.61559 * 220.06257 * 25 9 8 45 45 H 1.08001 * 124.45008 * 77.49433 * 26 2 1 46 46 H 1.07999 * 124.41184 * 180.02562 * 27 26 2 47 47 H 1.08998 * 110.38367 * 224.65488 * 28 27 26 48 48 H 1.08997 * 110.38165 * 102.27825 * 28 27 26 49 49 H 1.09000 * 111.03396 * 212.32524 * 29 2 1 50 50 H 1.09001 * 111.03923 * 336.21608 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7675 1.7951 0.9031 5 7 1.7294 2.2521 -1.0035 6 6 2.2383 3.6258 -1.0033 7 1 3.1521 3.7385 -0.4198 8 6 2.3214 4.2523 -2.4053 9 6 0.8758 4.7311 -2.1910 10 1 0.1247 4.0118 -2.5173 11 6 0.6138 6.1437 -2.7172 12 7 -0.8064 6.4758 -2.5422 13 6 -1.0959 7.8280 -3.0380 14 6 -2.5586 8.1326 -2.8416 15 8 -3.2881 7.3050 -2.3376 16 7 -3.0562 9.3247 -3.2259 17 6 -4.3868 9.6021 -3.0467 18 1 -5.0363 8.8652 -2.5980 19 6 -4.8999 10.8311 -3.4434 20 7 -4.1096 11.7275 -3.9898 21 14 -6.7131 11.2087 -3.1998 22 1 -7.0451 11.1310 -1.7545 23 1 -7.0058 12.5754 -3.7017 24 1 -7.5295 10.2202 -3.9492 25 6 1.1632 4.6797 -0.6812 26 6 2.0563 -0.7565 -1.1974 27 6 2.4686 -1.9486 -0.8539 28 6 2.2816 -2.1842 0.6268 29 6 2.0686 -0.7743 1.2253 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3634 -1.0276 -0.0127 32 1 -0.3634 0.5028 0.8962 33 1 1.1589 1.9463 -1.7260 34 1 2.4246 3.5194 -3.2055 35 1 3.0440 5.0649 -2.4797 36 1 0.8701 6.1905 -3.7757 37 1 1.2246 6.8568 -2.1636 38 1 -1.3959 5.7919 -2.9927 39 1 -0.4968 8.5530 -2.4870 40 1 -0.8515 7.8860 -4.0987 41 1 -2.4726 9.9868 -3.6286 42 1 -4.4678 12.5852 -4.2671 43 1 1.5688 5.6093 -0.2820 44 1 0.3327 4.2914 -0.0917 45 1 2.0884 -0.3632 -2.2027 46 1 2.8860 -2.6711 -1.5396 47 1 3.1715 -2.6472 1.0530 48 1 1.4057 -2.8083 0.8043 49 1 3.0108 -0.3504 1.5727 50 1 1.3323 -0.7967 2.0287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485694101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:21 Heat of formation + Delta-G solvation = -64.869329 kcal Electronic energy + Delta-G solvation = -28013.072155 eV Core-core repulsion = 24039.638570 eV Total energy + Delta-G solvation = -3973.433585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75676 -40.35297 -39.97330 -38.47222 -36.54605 -35.77571 -34.31548 -33.26015 -32.01940 -29.98812 -29.60083 -27.31719 -26.59749 -26.46807 -25.32266 -23.51715 -22.72968 -21.15457 -20.83478 -20.22086 -19.89816 -19.81917 -18.12764 -17.82361 -17.12983 -16.94031 -16.54461 -16.41803 -16.20297 -15.94484 -15.63819 -15.37507 -15.32292 -15.07690 -14.54468 -14.36207 -14.17105 -13.87385 -13.62123 -13.49665 -13.31882 -13.27060 -13.04624 -13.01766 -12.88116 -12.62378 -12.57058 -12.43769 -12.25312 -12.19588 -12.12824 -11.81307 -11.77836 -11.50610 -11.40980 -11.14698 -10.84664 -10.33598 -10.02843 -10.01848 -9.87023 -9.25013 -8.46722 -5.95688 1.21153 1.39696 1.41591 1.52567 1.64686 2.05380 2.18661 2.29158 2.93438 3.20494 3.44092 3.47846 3.56743 3.60829 3.81882 3.88915 3.91994 4.00721 4.04479 4.29783 4.32307 4.37662 4.46303 4.53562 4.55292 4.60155 4.66132 4.73741 4.75029 4.76795 4.86160 4.87746 4.91431 4.95765 4.97593 5.13342 5.17451 5.17827 5.22486 5.28142 5.32335 5.40386 5.53106 5.67920 5.90814 5.92279 6.13552 6.46110 6.53011 6.60142 7.12285 7.22606 7.56157 8.11597 8.70362 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.001671 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.519378 B =16756.966197 C =17428.620430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 C 0.525 3.475 4 O -0.584 6.584 5 N -0.697 5.697 6 C 0.114 3.886 7 H 0.085 0.915 8 C -0.119 4.119 9 C -0.099 4.099 10 H 0.092 0.908 11 C 0.070 3.930 12 N -0.684 5.684 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.337 4.337 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.140 4.140 26 C -0.173 4.173 27 C -0.145 4.145 28 C -0.102 4.102 29 C -0.113 4.113 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.343 0.657 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.143 0.857 46 H 0.148 0.852 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.883 -24.604 0.976 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 C 0.313 3.687 4 O -0.464 6.464 5 N -0.348 5.348 6 C 0.008 3.992 7 H 0.103 0.897 8 C -0.157 4.157 9 C -0.118 4.118 10 H 0.110 0.890 11 C -0.058 4.058 12 N -0.316 5.316 13 C -0.067 4.067 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.466 4.466 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.817 3.183 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.179 4.179 26 C -0.191 4.191 27 C -0.163 4.163 28 C -0.139 4.139 29 C -0.151 4.151 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.948 -24.457 2.524 29.862 hybrid contribution -0.938 0.793 -1.140 1.676 sum 16.010 -23.664 1.384 28.604 Atomic orbital electron populations 1.21775 0.90480 1.03960 1.02671 1.20722 0.97958 0.90290 0.96958 1.20984 0.79042 0.87904 0.80810 1.90656 1.39609 1.78468 1.37644 1.45603 1.51917 1.11352 1.25896 1.21902 0.97155 0.80985 0.99130 0.89729 1.23259 0.96224 1.00870 0.95362 1.22509 0.97496 0.96116 0.95631 0.89015 1.22062 0.87670 0.96661 0.99430 1.60072 1.06028 1.02078 1.63434 1.21525 0.91904 0.93399 0.99900 1.20937 0.91217 0.82653 0.82799 1.90486 1.62071 1.48892 1.49630 1.41936 1.09575 1.14662 1.54868 1.19641 0.86066 1.00934 1.39969 0.90358 1.26040 1.04395 0.94796 0.95985 1.69660 1.37629 1.07472 1.41270 0.84989 0.76991 0.77669 0.78680 1.19862 1.19416 1.19609 1.23408 0.98383 0.99118 0.96951 1.23171 1.01817 0.96377 0.97739 1.23636 0.97866 0.97442 0.97347 1.21446 1.03053 0.96328 0.93033 1.22504 1.01598 0.95057 0.95938 0.91007 0.89817 0.92805 0.75061 0.89135 0.87423 0.93749 0.90572 0.83851 0.88118 0.91528 0.76965 0.91277 0.89463 0.93178 0.83951 0.83408 0.90136 0.88946 0.91771 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.39 71.98 0.60 -1.08 16 2 C -0.06 -0.87 0.73 -52.99 -0.04 -0.90 16 3 C 0.52 11.20 6.54 87.66 0.57 11.77 16 4 O -0.58 -17.61 15.09 -3.02 -0.05 -17.66 16 5 N -0.70 -11.62 5.11 -439.76 -2.25 -13.87 16 6 C 0.11 2.06 4.33 45.58 0.20 2.26 16 7 H 0.08 1.84 7.46 -2.38 -0.02 1.83 16 8 C -0.12 -1.53 7.39 31.12 0.23 -1.30 16 9 C -0.10 -1.74 3.77 -10.27 -0.04 -1.77 16 10 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 11 C 0.07 1.48 5.51 86.30 0.48 1.95 16 12 N -0.68 -20.92 6.13 -517.92 -3.17 -24.09 16 13 C 0.07 2.21 6.17 85.55 0.53 2.74 16 14 C 0.44 20.88 7.82 87.66 0.69 21.57 16 15 O -0.62 -34.87 15.78 -3.08 -0.05 -34.92 16 16 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 17 C -0.34 -19.26 9.68 84.04 0.81 -18.44 16 18 H 0.08 4.77 7.16 -2.92 -0.02 4.75 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 21 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.14 -2.95 7.44 31.18 0.23 -2.72 16 26 C -0.17 -2.01 9.36 26.05 0.24 -1.76 16 27 C -0.15 -1.46 10.78 26.05 0.28 -1.18 16 28 C -0.10 -1.09 6.81 30.53 0.21 -0.88 16 29 C -0.11 -1.82 6.00 31.71 0.19 -1.63 16 30 H 0.07 0.78 7.59 -2.39 -0.02 0.76 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.41 4.78 8.13 -92.71 -0.75 4.03 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 38 H 0.34 10.93 8.43 -89.69 -0.76 10.17 16 39 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.40 19.37 7.90 -92.70 -0.73 18.64 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.09 1.89 7.92 -2.39 -0.02 1.87 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 1.36 7.02 -2.39 -0.02 1.34 16 50 H 0.08 1.20 7.90 -2.39 -0.02 1.18 16 Total: -1.00 -74.12 408.86 -0.46 -74.58 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -1.28 Total: 43.08 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.65 Total: 8.43 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -6.76 Total: -118.56 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.09 Total: -52.58 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.12 -0.46 -74.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485694101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.711 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds