Wall clock time and date at job start Tue Mar 31 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.34256 * 2 1 4 4 O 1.21275 * 120.00342 * 239.29230 * 3 2 1 5 5 N 1.34777 * 119.99747 * 59.29988 * 3 2 1 6 6 C 1.46501 * 119.99920 * 179.97438 * 5 3 2 7 7 H 1.09000 * 112.84680 * 23.80344 * 6 5 3 8 8 C 1.53786 * 113.61519 * 154.99770 * 6 5 3 9 9 C 1.53784 * 87.07739 * 89.20171 * 8 6 5 10 10 H 1.08999 * 113.61422 * 270.79439 * 9 8 6 11 11 C 1.52998 * 113.60957 * 139.98397 * 9 8 6 12 12 N 1.46907 * 109.47021 * 174.99690 * 11 9 8 13 13 C 1.46895 * 110.99969 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47051 * 180.02562 * 13 12 11 15 15 O 1.21292 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99722 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00228 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99996 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47081 * 120.00006 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00378 * 21 19 17 25 25 C 1.53776 * 87.08189 * 25.43380 * 9 8 6 26 26 C 1.51107 * 110.38501 * 122.28747 * 2 1 3 27 27 C 1.30520 * 111.10198 * 102.49673 * 26 2 1 28 28 C 1.51101 * 111.10831 * 359.97438 * 27 26 2 29 29 C 1.54633 * 110.39025 * 237.71112 * 2 1 3 30 30 H 1.08997 * 109.46904 * 60.70524 * 1 2 3 31 31 H 1.09004 * 109.46615 * 180.69743 * 1 2 3 32 32 H 1.08992 * 109.47378 * 300.69817 * 1 2 3 33 33 H 0.96999 * 120.00315 * 359.97438 * 5 3 2 34 34 H 1.09000 * 113.61251 * 334.65749 * 8 6 5 35 35 H 1.08994 * 113.68985 * 203.76265 * 8 6 5 36 36 H 1.09003 * 109.47314 * 54.99800 * 11 9 8 37 37 H 1.09004 * 109.47259 * 294.99739 * 11 9 8 38 38 H 1.00893 * 111.00026 * 303.95479 * 12 11 9 39 39 H 1.09004 * 109.47210 * 60.00310 * 13 12 11 40 40 H 1.08997 * 109.47605 * 300.00670 * 13 12 11 41 41 H 0.96995 * 120.00015 * 359.72695 * 16 14 13 42 42 H 0.97000 * 120.00310 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.61425 * 89.11538 * 25 9 8 44 44 H 1.09001 * 113.61255 * 220.01858 * 25 9 8 45 45 H 1.08002 * 124.44553 * 282.50615 * 26 2 1 46 46 H 1.08004 * 124.44750 * 179.97438 * 27 26 2 47 47 H 1.09003 * 110.38735 * 135.24804 * 28 27 26 48 48 H 1.09003 * 110.39068 * 257.51721 * 28 27 26 49 49 H 1.09007 * 111.03495 * 23.74201 * 29 2 1 50 50 H 1.08998 * 111.03572 * 147.67171 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9030 5 7 1.7294 2.2520 1.0036 6 6 2.2391 3.6255 1.0040 7 1 2.4997 3.9804 0.0069 8 6 1.3619 4.6079 1.7979 9 6 2.2041 4.2407 3.0311 10 1 1.8152 3.3877 3.5871 11 6 2.5301 5.4361 3.9285 12 7 3.2295 4.9681 5.1327 13 6 3.5598 6.0914 6.0197 14 6 4.2753 5.5736 7.2408 15 8 4.4894 4.3857 7.3601 16 7 4.6772 6.4306 8.2004 17 6 5.3276 5.9595 9.3114 18 1 5.5182 4.9018 9.4177 19 6 5.7425 6.8430 10.3005 20 7 5.5109 8.1300 10.1710 21 14 6.6293 6.2012 11.8140 22 1 6.7659 4.7255 11.7192 23 1 7.9774 6.8183 11.8967 24 1 5.8500 6.5495 13.0292 25 6 3.3343 3.8779 2.0535 26 6 2.0564 -0.7566 1.1974 27 6 2.4670 -1.9479 0.8572 28 6 2.2825 -2.1847 -0.6237 29 6 2.0688 -0.7743 -1.2253 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3633 -1.0277 0.0125 32 1 -0.3634 0.5246 0.8836 33 1 1.1584 1.9465 1.7258 34 1 0.3193 4.2993 1.8735 35 1 1.4744 5.6461 1.4857 36 1 1.6058 5.9369 4.2168 37 1 3.1677 6.1344 3.3863 38 1 2.6857 4.2709 5.6187 39 1 2.6429 6.5971 6.3225 40 1 4.2047 6.7939 5.4918 41 1 4.5095 7.3810 8.1031 42 1 5.8009 8.7469 10.8611 43 1 3.9872 4.7162 1.8104 44 1 3.8840 2.9799 2.3356 45 1 2.0884 -0.3633 2.2028 46 1 2.8840 -2.6697 1.5440 47 1 3.1733 -2.6479 -1.0481 48 1 1.4082 -2.8108 -0.8022 49 1 1.3321 -0.7972 -2.0285 50 1 3.0109 -0.3503 -1.5728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485694102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:26 Heat of formation + Delta-G solvation = -41.078809 kcal Electronic energy + Delta-G solvation = -28061.746524 eV Core-core repulsion = 24089.344574 eV Total energy + Delta-G solvation = -3972.401950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01468 -39.50980 -38.23917 -37.66349 -35.23545 -33.89398 -33.38171 -31.44772 -31.20212 -29.32306 -28.45422 -26.06712 -25.87053 -25.49047 -23.85541 -22.64635 -21.87718 -20.22806 -19.62369 -19.24473 -19.02716 -17.86710 -17.46782 -16.46129 -16.04537 -15.79877 -15.62600 -15.23248 -15.05600 -14.65672 -14.48723 -14.22457 -13.98582 -13.78322 -13.65469 -13.35847 -13.20366 -12.90553 -12.71957 -12.51066 -12.45808 -12.22535 -12.05521 -11.76931 -11.64311 -11.60480 -11.54653 -11.47872 -11.22641 -11.05945 -10.96100 -10.57809 -10.34371 -10.31825 -10.21563 -10.05912 -9.51778 -9.31059 -9.22137 -8.44073 -8.02362 -7.94901 -6.41549 -3.82279 1.77711 2.44569 2.89598 3.16384 3.26856 3.34231 3.91531 4.03519 4.06313 4.16241 4.25365 4.32903 4.51912 4.56734 4.59100 4.73655 4.82919 4.87723 4.91037 5.12919 5.17727 5.22205 5.24839 5.26257 5.35222 5.42326 5.45837 5.48989 5.54262 5.55807 5.61004 5.65187 5.72296 5.75372 5.83074 5.90437 5.99276 6.02181 6.04410 6.08219 6.10684 6.27762 6.43401 6.46488 7.24542 7.25703 7.55596 7.68871 7.99128 8.07045 8.61794 9.18324 9.54931 10.06439 10.76298 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.001762 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.798505 B =15889.969618 C =16922.685526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C 0.531 3.469 4 O -0.538 6.538 5 N -0.708 5.708 6 C 0.115 3.885 7 H 0.100 0.900 8 C -0.140 4.140 9 C -0.104 4.104 10 H 0.089 0.911 11 C 0.069 3.931 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.134 4.134 26 C -0.162 4.162 27 C -0.148 4.148 28 C -0.104 4.104 29 C -0.107 4.107 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.347 0.653 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 -12.668 -21.862 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C 0.317 3.683 4 O -0.414 6.414 5 N -0.359 5.359 6 C 0.009 3.991 7 H 0.118 0.882 8 C -0.179 4.179 9 C -0.123 4.123 10 H 0.107 0.893 11 C -0.061 4.061 12 N -0.300 5.300 13 C -0.082 4.082 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.202 5.202 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.173 4.173 26 C -0.181 4.181 27 C -0.166 4.166 28 C -0.141 4.141 29 C -0.144 4.144 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.030 -13.032 -22.612 28.737 hybrid contribution -0.762 0.580 1.734 1.981 sum -12.791 -12.451 -20.878 27.469 Atomic orbital electron populations 1.21757 0.91615 1.03086 1.02488 1.20699 0.97167 0.91989 0.96311 1.20431 0.79802 0.86827 0.81258 1.90679 1.37190 1.77185 1.36363 1.45663 1.52302 1.12002 1.25893 1.21910 0.95669 0.81432 1.00060 0.88168 1.23358 0.98638 0.99885 0.96027 1.22551 0.96895 0.98454 0.94400 0.89307 1.21973 0.96179 0.96047 0.91889 1.60050 1.49480 1.12921 1.07513 1.21670 0.99161 0.93550 0.93849 1.19837 0.85277 0.87255 0.84976 1.90519 1.60603 1.16131 1.79494 1.41877 1.51161 1.09189 1.17924 1.19756 1.32117 0.95205 0.95724 0.87882 1.25267 0.98143 0.95027 0.99593 1.69621 1.47366 1.01788 1.35568 0.85798 0.78745 0.79154 0.80636 1.19225 1.20744 1.20784 1.23365 0.96386 1.02541 0.94967 1.23054 1.01045 0.96152 0.97802 1.23353 0.98659 0.97423 0.97172 1.21460 1.02109 0.97469 0.93057 1.22534 1.02746 0.93753 0.95397 0.91794 0.91197 0.91966 0.76511 0.91080 0.88632 0.95551 0.90954 0.83372 0.94002 0.89675 0.77469 0.91942 0.89076 0.90929 0.85203 0.85250 0.90716 0.90432 0.90454 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 8.39 37.16 0.31 -0.45 16 2 C -0.06 -0.46 0.73 -155.75 -0.11 -0.58 16 3 C 0.53 5.57 6.54 -10.98 -0.07 5.50 16 4 O -0.54 -7.70 15.09 5.56 0.08 -7.62 16 5 N -0.71 -6.12 5.12 -53.02 -0.27 -6.39 16 6 C 0.11 1.07 4.32 -67.12 -0.29 0.78 16 7 H 0.10 1.07 7.46 -51.93 -0.39 0.68 16 8 C -0.14 -1.08 7.39 -25.91 -0.19 -1.27 16 9 C -0.10 -1.01 3.78 -89.81 -0.34 -1.35 16 10 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 11 C 0.07 0.80 5.52 -3.82 -0.02 0.78 16 12 N -0.67 -10.66 6.12 -115.05 -0.70 -11.36 16 13 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 14 C 0.44 10.51 7.82 -10.98 -0.09 10.42 16 15 O -0.58 -15.99 15.78 5.55 0.09 -15.90 16 16 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 21 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.13 -1.43 7.43 -25.92 -0.19 -1.62 16 26 C -0.16 -1.24 9.35 -35.69 -0.33 -1.57 16 27 C -0.15 -1.05 10.78 -35.70 -0.38 -1.44 16 28 C -0.10 -0.67 6.81 -26.73 -0.18 -0.85 16 29 C -0.11 -0.85 6.01 -24.91 -0.15 -1.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 7.58 -51.93 -0.39 -0.09 16 33 H 0.40 2.63 8.13 -40.82 -0.33 2.30 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.83 7.84 -51.93 -0.41 0.43 16 38 H 0.35 5.69 8.43 -39.30 -0.33 5.36 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 50 H 0.09 0.91 7.02 -51.93 -0.36 0.54 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -33.58 408.80 -9.68 -43.26 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -8.36 Total: 13.99 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.32 Total: 0.15 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.31 Total: -56.18 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.58 -9.68 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485694102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.181 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds