Wall clock time and date at job start Tue Mar 31 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.34256 * 2 1 4 4 O 1.21275 * 120.00342 * 239.29230 * 3 2 1 5 5 N 1.34777 * 119.99747 * 59.29988 * 3 2 1 6 6 C 1.46501 * 119.99920 * 179.97438 * 5 3 2 7 7 H 1.09000 * 112.84680 * 23.80344 * 6 5 3 8 8 C 1.53786 * 113.61519 * 154.99770 * 6 5 3 9 9 C 1.53784 * 87.07739 * 89.20171 * 8 6 5 10 10 H 1.08999 * 113.61422 * 270.79439 * 9 8 6 11 11 C 1.52998 * 113.60957 * 139.98397 * 9 8 6 12 12 N 1.46907 * 109.47021 * 174.99690 * 11 9 8 13 13 C 1.46895 * 110.99969 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47051 * 180.02562 * 13 12 11 15 15 O 1.21292 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99722 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00228 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99996 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47081 * 120.00006 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00378 * 21 19 17 25 25 C 1.53776 * 87.08189 * 25.43380 * 9 8 6 26 26 C 1.51107 * 110.38501 * 122.28747 * 2 1 3 27 27 C 1.30520 * 111.10198 * 102.49673 * 26 2 1 28 28 C 1.51101 * 111.10831 * 359.97438 * 27 26 2 29 29 C 1.54633 * 110.39025 * 237.71112 * 2 1 3 30 30 H 1.08997 * 109.46904 * 60.70524 * 1 2 3 31 31 H 1.09004 * 109.46615 * 180.69743 * 1 2 3 32 32 H 1.08992 * 109.47378 * 300.69817 * 1 2 3 33 33 H 0.96999 * 120.00315 * 359.97438 * 5 3 2 34 34 H 1.09000 * 113.61251 * 334.65749 * 8 6 5 35 35 H 1.08994 * 113.68985 * 203.76265 * 8 6 5 36 36 H 1.09003 * 109.47314 * 54.99800 * 11 9 8 37 37 H 1.09004 * 109.47259 * 294.99739 * 11 9 8 38 38 H 1.00893 * 111.00026 * 303.95479 * 12 11 9 39 39 H 1.09004 * 109.47210 * 60.00310 * 13 12 11 40 40 H 1.08997 * 109.47605 * 300.00670 * 13 12 11 41 41 H 0.96995 * 120.00015 * 359.72695 * 16 14 13 42 42 H 0.97000 * 120.00310 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.61425 * 89.11538 * 25 9 8 44 44 H 1.09001 * 113.61255 * 220.01858 * 25 9 8 45 45 H 1.08002 * 124.44553 * 282.50615 * 26 2 1 46 46 H 1.08004 * 124.44750 * 179.97438 * 27 26 2 47 47 H 1.09003 * 110.38735 * 135.24804 * 28 27 26 48 48 H 1.09003 * 110.39068 * 257.51721 * 28 27 26 49 49 H 1.09007 * 111.03495 * 23.74201 * 29 2 1 50 50 H 1.08998 * 111.03572 * 147.67171 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9030 5 7 1.7294 2.2520 1.0036 6 6 2.2391 3.6255 1.0040 7 1 2.4997 3.9804 0.0069 8 6 1.3619 4.6079 1.7979 9 6 2.2041 4.2407 3.0311 10 1 1.8152 3.3877 3.5871 11 6 2.5301 5.4361 3.9285 12 7 3.2295 4.9681 5.1327 13 6 3.5598 6.0914 6.0197 14 6 4.2753 5.5736 7.2408 15 8 4.4894 4.3857 7.3601 16 7 4.6772 6.4306 8.2004 17 6 5.3276 5.9595 9.3114 18 1 5.5182 4.9018 9.4177 19 6 5.7425 6.8430 10.3005 20 7 5.5109 8.1300 10.1710 21 14 6.6293 6.2012 11.8140 22 1 6.7659 4.7255 11.7192 23 1 7.9774 6.8183 11.8967 24 1 5.8500 6.5495 13.0292 25 6 3.3343 3.8779 2.0535 26 6 2.0564 -0.7566 1.1974 27 6 2.4670 -1.9479 0.8572 28 6 2.2825 -2.1847 -0.6237 29 6 2.0688 -0.7743 -1.2253 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3633 -1.0277 0.0125 32 1 -0.3634 0.5246 0.8836 33 1 1.1584 1.9465 1.7258 34 1 0.3193 4.2993 1.8735 35 1 1.4744 5.6461 1.4857 36 1 1.6058 5.9369 4.2168 37 1 3.1677 6.1344 3.3863 38 1 2.6857 4.2709 5.6187 39 1 2.6429 6.5971 6.3225 40 1 4.2047 6.7939 5.4918 41 1 4.5095 7.3810 8.1031 42 1 5.8009 8.7469 10.8611 43 1 3.9872 4.7162 1.8104 44 1 3.8840 2.9799 2.3356 45 1 2.0884 -0.3633 2.2028 46 1 2.8840 -2.6697 1.5440 47 1 3.1733 -2.6479 -1.0481 48 1 1.4082 -2.8108 -0.8022 49 1 1.3321 -0.7972 -2.0285 50 1 3.0109 -0.3503 -1.5728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485694102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:25 Heat of formation + Delta-G solvation = -64.807965 kcal Electronic energy + Delta-G solvation = -28062.775498 eV Core-core repulsion = 24089.344574 eV Total energy + Delta-G solvation = -3973.430924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75837 -40.36053 -39.98225 -38.48026 -36.55192 -35.78298 -34.31963 -33.26553 -32.01719 -29.99563 -29.60481 -27.31924 -26.61762 -26.44436 -25.32238 -23.51773 -22.73685 -21.16368 -20.84494 -20.22355 -19.89907 -19.82355 -18.13460 -17.83162 -17.16836 -16.95317 -16.49853 -16.43812 -16.13561 -16.00356 -15.66508 -15.37631 -15.30234 -15.09607 -14.51783 -14.38614 -14.17322 -13.87205 -13.53136 -13.51273 -13.38080 -13.28058 -13.06851 -12.99958 -12.89273 -12.62670 -12.57478 -12.41698 -12.25146 -12.19347 -12.12240 -11.81449 -11.77041 -11.52389 -11.40544 -11.14817 -10.84961 -10.34242 -10.02826 -10.02162 -9.89562 -9.25278 -8.47615 -5.96360 1.19037 1.36029 1.41321 1.55591 1.65989 2.04546 2.17893 2.28670 2.93156 3.19683 3.44006 3.47757 3.57533 3.58947 3.81127 3.86782 3.94876 4.01207 4.03618 4.28836 4.31904 4.37579 4.45943 4.53813 4.54924 4.60800 4.65932 4.74916 4.75507 4.78120 4.85842 4.87650 4.91313 4.96932 4.97414 5.13007 5.16821 5.18642 5.22320 5.29149 5.32789 5.40338 5.53907 5.67866 5.88636 5.90546 6.13324 6.45805 6.53062 6.59502 7.11916 7.22665 7.55610 8.10973 8.69983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.001762 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.798505 B =15889.969618 C =16922.685526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C 0.525 3.475 4 O -0.584 6.584 5 N -0.697 5.697 6 C 0.114 3.886 7 H 0.086 0.914 8 C -0.119 4.119 9 C -0.099 4.099 10 H 0.091 0.909 11 C 0.070 3.930 12 N -0.684 5.684 13 C 0.065 3.935 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.269 1.269 25 C -0.141 4.141 26 C -0.176 4.176 27 C -0.149 4.149 28 C -0.101 4.101 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.343 0.657 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 -12.591 -21.729 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C 0.313 3.687 4 O -0.463 6.463 5 N -0.348 5.348 6 C 0.008 3.992 7 H 0.104 0.896 8 C -0.157 4.157 9 C -0.118 4.118 10 H 0.109 0.891 11 C -0.058 4.058 12 N -0.317 5.317 13 C -0.067 4.067 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.179 4.179 26 C -0.194 4.194 27 C -0.167 4.167 28 C -0.138 4.138 29 C -0.149 4.149 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.711 -12.927 -22.473 29.328 hybrid contribution -0.218 0.544 1.644 1.746 sum -13.929 -12.383 -20.829 27.950 Atomic orbital electron populations 1.21766 0.89672 1.04098 1.03040 1.20731 0.98622 0.90081 0.96397 1.20983 0.79070 0.87908 0.80776 1.90656 1.39307 1.78191 1.38176 1.45607 1.51783 1.11642 1.25756 1.21860 0.95947 0.82233 0.99116 0.89633 1.23265 0.98989 0.99985 0.93454 1.22511 0.96813 0.97965 0.94479 0.89060 1.22067 0.96597 0.96909 0.90243 1.60057 1.50869 1.12549 1.08198 1.21526 0.99655 0.94139 0.91408 1.20944 0.84122 0.86571 0.85927 1.90486 1.61955 1.18028 1.80599 1.41949 1.51553 1.09595 1.18018 1.19701 1.34427 0.94496 0.97723 0.90391 1.26052 0.98238 0.95192 1.01873 1.69675 1.47423 1.02458 1.36538 0.84863 0.77982 0.78158 0.77278 1.19840 1.19664 1.19458 1.23390 0.96846 1.01453 0.96254 1.23132 1.01965 0.96481 0.97868 1.23588 0.97881 0.97524 0.97725 1.21479 1.03114 0.96685 0.92492 1.22538 1.01687 0.94684 0.95983 0.91851 0.89969 0.90797 0.75080 0.89116 0.87372 0.93709 0.90566 0.83844 0.91502 0.88103 0.76956 0.91288 0.89399 0.93329 0.84879 0.84088 0.90414 0.88532 0.89393 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.39 71.98 0.60 -0.65 16 2 C -0.06 -0.84 0.73 -52.99 -0.04 -0.88 16 3 C 0.52 11.12 6.54 87.66 0.57 11.70 16 4 O -0.58 -17.47 15.09 -3.01 -0.05 -17.52 16 5 N -0.70 -11.60 5.12 -440.03 -2.25 -13.85 16 6 C 0.11 2.05 4.32 45.52 0.20 2.25 16 7 H 0.09 1.84 7.46 -2.39 -0.02 1.82 16 8 C -0.12 -1.52 7.39 31.12 0.23 -1.29 16 9 C -0.10 -1.75 3.78 -10.27 -0.04 -1.79 16 10 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 11 C 0.07 1.48 5.52 86.30 0.48 1.96 16 12 N -0.68 -21.00 6.12 -517.92 -3.17 -24.17 16 13 C 0.07 2.21 6.17 85.56 0.53 2.74 16 14 C 0.44 20.93 7.82 87.66 0.69 21.62 16 15 O -0.62 -34.95 15.78 -3.07 -0.05 -35.00 16 16 N -0.57 -29.67 5.29 -306.98 -1.62 -31.29 16 17 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 18 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 20 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 21 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.14 -2.98 7.43 31.12 0.23 -2.75 16 26 C -0.18 -2.56 9.35 26.27 0.25 -2.31 16 27 C -0.15 -1.96 10.78 26.27 0.28 -1.68 16 28 C -0.10 -1.19 6.81 30.60 0.21 -0.98 16 29 C -0.11 -1.76 6.01 31.77 0.19 -1.57 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.54 7.58 -2.39 -0.02 0.53 16 33 H 0.41 4.81 8.13 -92.71 -0.75 4.05 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.57 7.84 -2.39 -0.02 1.55 16 38 H 0.34 10.96 8.43 -89.70 -0.76 10.20 16 39 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 42 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.09 1.89 7.90 -2.39 -0.02 1.87 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.09 1.15 7.90 -2.38 -0.02 1.13 16 50 H 0.06 1.32 7.02 -2.39 -0.02 1.31 16 Total: -1.00 -74.36 408.80 -0.46 -74.82 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -1.28 Total: 43.55 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.66 Total: 7.78 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -6.76 Total: -118.78 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.36 -0.46 -74.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485694102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.009 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds