Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31697 * 119.71415 * 2 1 4 4 C 1.31926 * 121.87784 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.46001 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46983 * 264.99948 * 5 4 3 7 7 C 1.52999 * 109.47439 * 145.00040 * 5 4 3 8 8 C 1.38354 * 121.07907 * 0.27329 * 4 3 2 9 9 C 1.38356 * 119.30508 * 359.43884 * 8 4 3 10 10 C 1.39524 * 119.71847 * 179.97438 * 2 1 3 11 11 C 1.47836 * 120.55901 * 359.97056 * 10 2 1 12 12 O 1.21551 * 120.00113 * 306.54633 * 11 10 2 13 13 N 1.34780 * 120.00040 * 126.54034 * 11 10 2 14 14 C 1.46498 * 119.99806 * 4.35480 * 13 11 10 15 15 C 1.46504 * 120.00103 * 184.34927 * 13 11 10 16 16 C 1.53003 * 109.46808 * 90.00433 * 15 13 11 17 17 H 1.09004 * 109.47164 * 59.99812 * 16 15 13 18 18 O 1.42898 * 109.46999 * 300.00137 * 16 15 13 19 19 C 1.52991 * 109.46941 * 179.97438 * 16 15 13 20 20 N 1.46504 * 109.47262 * 185.00100 * 19 16 15 21 21 C 1.36935 * 120.00149 * 179.97438 * 20 19 16 22 22 H 1.07997 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99863 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00248 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99950 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47335 * 120.00502 * 25 23 21 28 28 H 1.48503 * 109.47055 * 240.00197 * 25 23 21 29 29 H 1.08999 * 109.47392 * 85.41260 * 1 2 3 30 30 H 1.09007 * 109.46823 * 205.41083 * 1 2 3 31 31 H 1.08998 * 109.47290 * 325.40725 * 1 2 3 32 32 H 1.08999 * 109.47057 * 24.99567 * 5 4 3 33 33 H 1.09005 * 109.47254 * 299.99988 * 6 5 4 34 34 H 1.08998 * 109.47458 * 60.00042 * 6 5 4 35 35 H 1.09001 * 109.47323 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.46853 * 300.00250 * 7 5 4 37 37 H 1.08997 * 109.47101 * 59.99282 * 7 5 4 38 38 H 1.08996 * 109.47355 * 179.97438 * 7 5 4 39 39 H 1.08006 * 120.34472 * 179.72290 * 8 4 3 40 40 H 1.07995 * 120.85667 * 180.28434 * 9 8 4 41 41 H 1.09001 * 109.47068 * 84.58771 * 14 13 11 42 42 H 1.08996 * 109.47227 * 204.58932 * 14 13 11 43 43 H 1.09003 * 109.47259 * 324.58855 * 14 13 11 44 44 H 1.08999 * 109.46912 * 210.00321 * 15 13 11 45 45 H 1.08995 * 109.46858 * 330.00654 * 15 13 11 46 46 H 0.96698 * 114.00065 * 299.99736 * 18 16 15 47 47 H 1.09000 * 109.47202 * 304.99675 * 19 16 15 48 48 H 1.09001 * 109.47225 * 65.00200 * 19 16 15 49 49 H 0.97001 * 119.99618 * 359.97438 * 20 19 16 50 50 H 0.96995 * 120.00086 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.1692 2.5328 0.0001 6 6 4.5142 2.9293 -1.4368 7 6 5.4535 2.4437 0.8269 8 6 4.2365 0.0365 -0.0067 9 6 3.5988 -1.1913 -0.0006 10 6 2.1987 -1.2117 0.0005 11 6 1.4657 -2.4956 0.0018 12 8 0.6204 -2.7120 0.8480 13 7 1.7347 -3.4260 -0.9355 14 6 2.8181 -3.2057 -1.8966 15 6 0.9437 -4.6579 -0.9930 16 6 -0.2603 -4.4482 -1.9135 17 1 0.0876 -4.1926 -2.9144 18 8 -1.0694 -3.3858 -1.4049 19 6 -1.0861 -5.7347 -1.9742 20 7 -2.1703 -5.5738 -2.9462 21 6 -3.0452 -6.6026 -3.1726 22 1 -2.9363 -7.5324 -2.6342 23 6 -4.0728 -6.4499 -4.0932 24 7 -4.2059 -5.3164 -4.7490 25 14 -5.2668 -7.8530 -4.4014 26 1 -4.9028 -9.0100 -3.5447 27 1 -6.6462 -7.4098 -4.0757 28 1 -5.2003 -8.2549 -5.8295 29 1 -0.3634 0.0822 -1.0243 30 1 -0.3633 -0.9283 0.4410 31 1 -0.3634 0.8460 0.5834 32 1 3.5083 3.2825 0.4351 33 1 5.1751 2.1795 -1.8719 34 1 3.5993 2.9929 -2.0258 35 1 5.0137 3.8981 -1.4364 36 1 5.2077 2.1611 1.8506 37 1 6.1143 1.6939 0.3919 38 1 5.9536 3.4121 0.8269 39 1 5.3152 0.0911 -0.0116 40 1 4.1661 -2.1102 -0.0007 41 1 3.7645 -3.5182 -1.4552 42 1 2.6279 -3.7877 -2.7983 43 1 2.8681 -2.1470 -2.1514 44 1 1.5609 -5.4682 -1.3810 45 1 0.5957 -4.9132 0.0078 46 1 -1.4144 -3.5451 -0.5158 47 1 -0.4461 -6.5632 -2.2776 48 1 -1.5077 -5.9425 -0.9907 49 1 -2.2683 -4.7385 -3.4295 50 1 -4.9237 -5.2099 -5.3926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486302984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = -44.296641 kcal Electronic energy + Delta-G solvation = -29327.718395 eV Core-core repulsion = 25355.176909 eV Total energy + Delta-G solvation = -3972.541486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.16321 -39.59302 -37.33628 -36.01429 -35.43494 -33.99492 -33.13413 -31.83070 -31.24054 -29.48663 -28.00137 -27.39774 -27.00561 -25.70653 -24.42166 -22.76674 -22.63149 -21.21847 -20.72311 -19.69877 -17.55735 -17.25972 -17.11888 -16.65240 -16.22440 -15.70552 -15.28984 -15.08228 -14.80153 -14.50169 -14.40779 -14.35888 -13.97442 -13.65377 -13.54058 -13.40381 -13.17071 -12.95256 -12.74684 -12.63216 -12.52558 -12.42946 -12.23844 -12.12497 -12.03994 -11.58414 -11.55182 -11.50401 -11.31532 -10.93014 -10.82351 -10.68639 -10.19416 -10.11813 -10.02072 -9.78305 -9.67925 -9.52001 -9.01409 -8.88804 -8.56904 -6.90512 -5.73667 -3.03040 0.56769 0.95485 2.52329 2.86875 3.44440 3.46090 3.49589 3.52255 3.77534 4.24957 4.27904 4.45069 4.58176 4.65418 4.68915 4.77885 4.82453 4.86079 4.92103 4.99586 5.16813 5.17520 5.22928 5.31578 5.33980 5.38669 5.45240 5.47426 5.51168 5.55080 5.58669 5.65658 5.69915 5.72881 5.76764 5.80241 5.85162 5.99454 6.01659 6.11275 6.24309 6.40390 6.43338 6.53163 6.74598 7.20811 7.70696 7.73251 8.04436 8.17663 8.44559 9.55941 10.13901 10.49451 11.48786 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002196 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.533017 B =12745.214914 C =13079.519920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.190 3.810 3 N -0.485 5.485 4 C 0.157 3.843 5 C -0.050 4.050 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.186 4.186 9 C -0.042 4.042 10 C -0.183 4.183 11 C 0.576 3.424 12 O -0.525 6.525 13 N -0.601 5.601 14 C 0.076 3.924 15 C 0.083 3.917 16 C 0.087 3.913 17 H 0.096 0.904 18 O -0.548 6.548 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.374 0.626 47 H 0.024 0.976 48 H 0.022 0.978 49 H 0.388 0.612 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.372 13.766 10.034 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 N -0.195 5.195 4 C 0.019 3.981 5 C -0.069 4.069 6 C -0.199 4.199 7 C -0.205 4.205 8 C -0.206 4.206 9 C -0.068 4.068 10 C -0.189 4.189 11 C 0.363 3.637 12 O -0.402 6.402 13 N -0.333 5.333 14 C -0.067 4.067 15 C -0.040 4.040 16 C 0.026 3.974 17 H 0.113 0.887 18 O -0.353 6.353 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.221 0.779 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.222 0.778 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.500 14.502 9.907 29.337 hybrid contribution -0.195 -1.668 -0.027 1.680 sum 23.305 12.834 9.880 28.380 Atomic orbital electron populations 1.21039 0.87610 1.05345 1.03949 1.21406 0.97384 0.86272 0.89761 1.67435 1.09250 1.28747 1.14039 1.21397 0.89302 0.95407 0.92040 1.20106 0.96469 0.92768 0.97537 1.21801 1.01967 1.01505 0.94620 1.21931 0.96320 1.02421 0.99836 1.21849 1.01559 0.92347 1.04814 1.21715 0.92836 0.98773 0.93439 1.20724 0.94599 0.95074 1.08465 1.17945 0.82035 0.82755 0.80947 1.90732 1.33373 1.78561 1.37492 1.47606 1.34306 1.19548 1.31865 1.21914 0.89196 1.02670 0.92968 1.22332 0.93807 0.85297 1.02539 1.22485 0.89117 0.88896 0.96919 0.88652 1.86543 1.69108 1.42987 1.36624 1.21232 0.90921 0.93993 0.94091 1.42253 1.31270 1.16835 1.46631 1.19265 1.05861 0.93882 1.18266 0.91208 1.24767 0.99366 0.97280 0.99595 1.69690 1.34161 1.24291 1.29654 0.86113 0.81141 0.81371 0.77524 1.20581 1.21831 1.21889 0.89774 0.88109 0.90356 0.89038 0.92427 0.92118 0.91739 0.92300 0.92082 0.91692 0.84223 0.84368 0.92546 0.90289 0.91246 0.89428 0.89153 0.77905 0.95802 0.96059 0.77750 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.87 36.01 0.36 -1.26 16 2 C 0.19 2.50 6.82 -82.17 -0.56 1.94 16 3 N -0.49 -6.06 10.17 -5.42 -0.06 -6.11 16 4 C 0.16 1.54 5.79 -82.51 -0.48 1.06 16 5 C -0.05 -0.36 3.23 -91.77 -0.30 -0.66 16 6 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 7 C -0.15 -0.76 8.62 37.16 0.32 -0.44 16 8 C -0.19 -1.54 9.16 -39.50 -0.36 -1.90 16 9 C -0.04 -0.38 8.08 -38.87 -0.31 -0.70 16 10 C -0.18 -2.24 4.73 -104.82 -0.50 -2.74 16 11 C 0.58 7.88 6.03 -12.33 -0.07 7.81 16 12 O -0.52 -8.60 13.69 2.65 0.04 -8.56 16 13 N -0.60 -7.15 2.83 -182.70 -0.52 -7.67 16 14 C 0.08 0.65 9.17 59.85 0.55 1.20 16 15 C 0.08 1.06 5.14 -4.04 -0.02 1.04 16 16 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 17 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 18 O -0.55 -9.99 12.19 -37.91 -0.46 -10.45 16 19 C 0.13 2.51 5.90 -4.04 -0.02 2.48 16 20 N -0.73 -18.81 5.55 -59.91 -0.33 -19.15 16 21 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 25 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.48 5.51 -51.92 -0.29 1.20 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.26 6.48 -51.93 -0.34 -0.08 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.14 0.76 6.30 -52.48 -0.33 0.43 16 40 H 0.14 0.94 6.84 -52.49 -0.36 0.58 16 41 H 0.06 0.35 7.28 -51.93 -0.38 -0.03 16 42 H 0.08 0.63 8.03 -51.93 -0.42 0.22 16 43 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 44 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 45 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 46 H 0.37 6.39 8.59 45.56 0.39 6.78 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.39 10.86 7.67 -40.82 -0.31 10.55 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -34.75 403.14 -8.31 -43.06 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.36 Total: 12.14 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.39 Total: 1.08 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.18 Total: -61.05 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.43 Total: -19.02 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.75 -8.31 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486302984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds