Wall clock time and date at job start Tue Mar 31 2020 19:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34480 * 125.57636 * 2 1 4 4 C 1.46686 * 106.33377 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94142 * 180.02562 * 4 3 2 6 6 O 1.21624 * 120.00264 * 135.32153 * 5 4 3 7 7 N 1.34773 * 119.99970 * 315.32021 * 5 4 3 8 8 C 1.46931 * 120.63318 * 3.61491 * 7 5 4 9 9 C 1.52758 * 109.01065 * 233.58561 * 8 7 5 10 10 C 1.53044 * 109.38235 * 305.58504 * 9 8 7 11 11 C 1.53042 * 109.53632 * 61.24323 * 10 9 8 12 12 H 1.08998 * 109.52602 * 58.59702 * 11 10 9 13 13 N 1.46497 * 109.49566 * 178.68566 * 11 10 9 14 14 C 1.36932 * 120.00461 * 59.83338 * 13 11 10 15 15 H 1.08003 * 119.99855 * 320.85146 * 14 13 11 16 16 C 1.38815 * 120.00067 * 140.84684 * 14 13 11 17 17 N 1.31619 * 119.99867 * 339.55756 * 16 14 13 18 18 Si 1.86797 * 120.00149 * 159.56157 * 16 14 13 19 19 H 1.48505 * 109.47188 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47378 * 119.99523 * 18 16 14 21 21 H 1.48504 * 109.47284 * 239.99936 * 18 16 14 22 22 C 1.46510 * 119.99638 * 239.83341 * 13 11 10 23 23 C 1.52993 * 109.47035 * 84.41508 * 22 13 11 24 24 O 1.42907 * 109.47166 * 64.99484 * 23 22 13 25 25 C 1.46927 * 120.63161 * 183.89332 * 7 5 4 26 26 C 1.36770 * 106.11408 * 0.02562 * 4 3 2 27 27 C 1.50708 * 125.79858 * 180.02562 * 26 4 3 28 28 N 1.34658 * 108.39711 * 359.76896 * 26 4 3 29 29 H 0.96997 * 124.84707 * 180.22383 * 28 26 4 30 30 H 1.09003 * 109.47015 * 90.00060 * 1 2 3 31 31 H 1.09004 * 109.47128 * 330.00464 * 1 2 3 32 32 H 1.08998 * 109.47431 * 209.99658 * 1 2 3 33 33 H 1.08001 * 126.83121 * 359.94259 * 3 2 1 34 34 H 1.09000 * 109.58456 * 353.41983 * 8 7 5 35 35 H 1.08998 * 109.58438 * 113.83959 * 8 7 5 36 36 H 1.08997 * 109.56481 * 185.55304 * 9 8 7 37 37 H 1.08997 * 109.38902 * 65.50922 * 9 8 7 38 38 H 1.08997 * 109.45928 * 301.22360 * 10 9 8 39 39 H 1.08995 * 109.44596 * 181.25111 * 10 9 8 40 40 H 0.97007 * 119.99652 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46741 * 204.41567 * 22 13 11 42 42 H 1.08996 * 109.46784 * 324.41205 * 22 13 11 43 43 H 1.09000 * 109.47241 * 184.99999 * 23 22 13 44 44 H 1.09006 * 109.46925 * 305.00138 * 23 22 13 45 45 H 0.96703 * 113.99821 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.58759 * 246.15608 * 25 7 5 47 47 H 1.08999 * 109.58747 * 6.44385 * 25 7 5 48 48 H 1.08992 * 109.46686 * 90.00294 * 27 26 4 49 49 H 1.08996 * 109.47088 * 210.00144 * 27 26 4 50 50 H 1.08999 * 109.46730 * 330.00114 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6103 0.0006 5 6 4.8978 1.4299 0.0014 6 8 5.8195 1.1460 0.7424 7 7 4.9962 2.4946 -0.8191 8 6 3.8624 2.8972 -1.6624 9 6 4.3301 2.9904 -3.1136 10 6 5.5397 3.9242 -3.1985 11 6 6.6843 3.3568 -2.3559 12 1 6.9434 2.3613 -2.7164 13 7 7.8520 4.2349 -2.4628 14 6 7.7637 5.5429 -2.0673 15 1 6.8686 6.1105 -2.2747 16 6 8.8246 6.1393 -1.3996 17 7 9.7243 5.3931 -0.7945 18 14 8.9754 8.0007 -1.3600 19 1 7.8453 8.6050 -2.1105 20 1 8.9421 8.4702 0.0484 21 1 10.2588 8.4069 -1.9871 22 6 9.1144 3.7136 -2.9930 23 6 9.0918 3.7800 -4.5213 24 8 9.0420 5.1461 -4.9381 25 6 6.2414 3.2711 -0.8918 26 6 3.5997 -0.7553 0.0004 27 6 4.7721 -1.7023 0.0014 28 7 2.3006 -1.1099 0.0048 29 1 1.9756 -2.0238 0.0087 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8901 0.5138 32 1 -0.3634 -0.8900 0.5138 33 1 1.9630 2.1233 -0.0009 34 1 3.0669 2.1563 -1.5832 35 1 3.4925 3.8696 -1.3374 36 1 3.5233 3.3830 -3.7326 37 1 4.6107 1.9985 -3.4678 38 1 5.2650 4.9093 -2.8216 39 1 5.8605 4.0089 -4.2367 40 1 10.4658 5.8099 -0.3282 41 1 9.9424 4.3136 -2.6154 42 1 9.2417 2.6785 -2.6761 43 1 9.9921 3.3115 -4.9188 44 1 8.2132 3.2540 -4.8949 45 1 9.0257 5.2642 -5.8978 46 1 6.0694 4.2747 -0.5027 47 1 7.0144 2.7781 -0.3023 48 1 5.0536 -1.9307 1.0292 49 1 4.4960 -2.6228 -0.5129 50 1 5.6144 -1.2381 -0.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489166609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:54 Heat of formation + Delta-G solvation = -43.918105 kcal Electronic energy + Delta-G solvation = -30529.748054 eV Core-core repulsion = 26557.222983 eV Total energy + Delta-G solvation = -3972.525071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.34016 -40.67290 -38.86829 -37.64800 -36.23474 -33.87444 -33.54500 -32.83374 -32.26860 -30.98021 -29.99697 -29.00843 -26.92048 -25.97812 -25.14218 -23.83726 -22.92386 -22.08618 -21.35168 -21.11825 -19.22694 -18.30192 -18.19181 -17.97021 -17.13906 -16.81155 -16.66731 -16.10253 -15.99598 -15.58224 -15.38713 -15.15982 -14.97118 -14.58728 -14.55500 -14.25573 -14.09665 -14.01896 -13.99356 -13.62495 -13.46783 -13.39396 -13.09223 -13.01568 -12.88761 -12.86759 -12.77916 -12.44870 -12.40265 -12.21002 -11.87512 -11.79040 -11.58948 -11.57581 -11.26956 -10.86174 -10.63146 -10.42602 -9.71895 -9.49271 -8.89893 -8.45463 -7.75617 -5.34955 0.91592 1.45205 1.48270 1.48551 1.57740 1.98281 2.29713 2.43801 2.57763 3.35849 3.57368 3.79665 3.80895 3.90363 4.08869 4.13300 4.21507 4.27530 4.28940 4.36963 4.48960 4.53549 4.54303 4.65638 4.66067 4.68243 4.71481 4.82453 4.89866 4.92790 4.93091 5.00803 5.02197 5.04400 5.07051 5.12852 5.21392 5.22533 5.31077 5.47507 5.60490 5.64434 5.72205 5.80459 5.84944 6.05475 6.54701 6.61499 6.72051 7.20115 7.27065 7.32752 7.92371 8.45738 9.23281 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.003166 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.820498 B = 8840.560404 C = 8957.974641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.030 3.970 3 C -0.189 4.189 4 C -0.251 4.251 5 C 0.578 3.422 6 O -0.602 6.602 7 N -0.600 5.600 8 C 0.099 3.901 9 C -0.119 4.119 10 C -0.113 4.113 11 C 0.170 3.830 12 H 0.047 0.953 13 N -0.581 5.581 14 C -0.229 4.229 15 H 0.053 0.947 16 C -0.036 4.036 17 N -0.924 5.924 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.297 1.297 21 H -0.295 1.295 22 C 0.143 3.857 23 C 0.073 3.927 24 O -0.573 6.573 25 C 0.126 3.874 26 C 0.087 3.913 27 C -0.085 4.085 28 N -0.534 5.534 29 H 0.431 0.569 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.246 0.754 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.047 0.953 44 H 0.040 0.960 45 H 0.376 0.624 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 -15.145 -5.925 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.213 4.213 4 C -0.261 4.261 5 C 0.369 3.631 6 O -0.485 6.485 7 N -0.331 5.331 8 C -0.022 4.022 9 C -0.158 4.158 10 C -0.152 4.152 11 C 0.062 3.938 12 H 0.065 0.935 13 N -0.301 5.301 14 C -0.360 4.360 15 H 0.070 0.930 16 C -0.232 4.232 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.224 1.224 21 H -0.222 1.222 22 C 0.017 3.983 23 C -0.007 4.007 24 O -0.378 6.378 25 C 0.002 3.998 26 C -0.031 4.031 27 C -0.143 4.143 28 N -0.132 5.132 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.222 0.778 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.119 0.881 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.378 -15.249 -4.815 25.903 hybrid contribution 1.136 0.887 -0.061 1.443 sum -19.242 -14.361 -4.875 24.500 Atomic orbital electron populations 1.20453 0.84683 1.04567 1.04105 1.20705 0.94946 0.85070 1.07309 1.21904 0.89325 0.99073 1.10954 1.20044 0.92912 0.93150 1.20032 1.18140 0.86473 0.79751 0.78727 1.90723 1.42954 1.72108 1.42686 1.48181 1.14778 1.28884 1.41262 1.22146 0.88436 1.01730 0.89908 1.21799 0.98098 0.99788 0.96108 1.21786 0.95069 0.98904 0.99445 1.20743 0.88614 0.92611 0.91818 0.93512 1.43844 1.07393 1.07393 1.71488 1.18914 1.01688 0.87197 1.28153 0.92977 1.25765 0.99812 1.00931 0.96715 1.70164 1.15825 1.35173 1.35780 0.85462 0.77482 0.82558 0.76386 1.19150 1.22440 1.22192 1.20884 0.90949 0.96049 0.90414 1.22792 0.98266 0.82523 0.97138 1.86761 1.97511 1.26433 1.27093 1.21779 0.84845 0.93776 0.99429 1.20204 0.86372 0.93348 1.03180 1.20388 0.92963 0.97482 1.03453 1.41393 1.03945 1.09730 1.58083 0.72873 0.89348 0.89357 0.89995 0.82961 0.86376 0.91399 0.87982 0.91883 0.93286 0.92393 0.94522 0.92197 0.94672 0.93536 0.94223 0.77756 0.93620 0.94153 0.90475 0.88126 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.41 71.24 0.74 0.16 16 2 C 0.03 0.47 7.13 40.98 0.29 0.76 16 3 C -0.19 -4.22 8.55 23.62 0.20 -4.02 16 4 C -0.25 -7.49 5.38 -19.04 -0.10 -7.59 16 5 C 0.58 22.89 7.24 86.62 0.63 23.51 16 6 O -0.60 -29.36 16.14 -4.11 -0.07 -29.43 16 7 N -0.60 -22.67 2.98 -823.78 -2.45 -25.12 16 8 C 0.10 2.75 5.80 86.22 0.50 3.25 16 9 C -0.12 -3.13 6.06 30.53 0.19 -2.94 16 10 C -0.11 -3.99 5.10 30.62 0.16 -3.84 16 11 C 0.17 7.36 2.78 45.07 0.13 7.49 16 12 H 0.05 2.01 7.87 -2.39 -0.02 1.99 16 13 N -0.58 -29.42 2.31 -677.59 -1.57 -30.99 16 14 C -0.23 -12.78 7.88 84.03 0.66 -12.11 16 15 H 0.05 2.93 6.90 -2.91 -0.02 2.91 16 16 C -0.04 -2.10 4.90 84.86 0.42 -1.68 16 17 N -0.92 -57.23 11.62 21.65 0.25 -56.98 16 18 Si 0.95 47.77 29.60 68.60 2.03 49.80 16 19 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 21 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 22 C 0.14 7.03 5.56 86.38 0.48 7.51 16 23 C 0.07 2.82 7.39 71.98 0.53 3.35 16 24 O -0.57 -23.39 13.40 -148.98 -2.00 -25.38 16 25 C 0.13 5.89 5.76 86.37 0.50 6.39 16 26 C 0.09 2.04 7.17 41.78 0.30 2.34 16 27 C -0.09 -1.82 9.97 71.24 0.71 -1.11 16 28 N -0.53 -8.10 5.90 -171.07 -1.01 -9.11 16 29 H 0.43 3.18 8.96 -92.71 -0.83 2.35 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.15 3.05 7.41 -2.91 -0.02 3.03 16 34 H 0.12 2.74 4.26 -2.39 -0.01 2.73 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.90 7.06 -2.39 -0.02 1.88 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 41 H 0.06 3.44 5.69 -2.39 -0.01 3.43 16 42 H 0.04 1.67 8.04 -2.39 -0.02 1.66 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 45 H 0.38 10.63 9.12 -74.06 -0.68 9.96 16 46 H 0.05 2.34 7.50 -2.39 -0.02 2.32 16 47 H 0.04 2.21 7.02 -2.39 -0.02 2.20 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.58 7.85 -2.39 -0.02 1.56 16 Total: -1.00 -82.52 395.93 0.97 -81.55 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.54 Total: 24.18 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.32 Total: 21.48 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -4.78 Total: -122.20 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.06 Total: -54.81 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -82.52 0.97 -81.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489166609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.628 kcal (2) G-P(sol) polarization free energy of solvation -82.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds