Wall clock time and date at job start Tue Mar 31 2020 18:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 125.56579 * 2 1 4 4 C 1.39841 * 107.86566 * 179.97438 * 3 2 1 5 5 C 1.37877 * 107.08520 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.23127 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99568 * 206.03930 * 6 5 4 8 8 N 1.34774 * 120.00005 * 26.31410 * 6 5 4 9 9 C 1.46918 * 120.63488 * 0.67445 * 8 6 5 10 10 C 1.53622 * 108.54601 * 126.36565 * 9 8 6 11 11 C 1.53039 * 109.24036 * 54.85879 * 10 9 8 12 12 N 1.46499 * 109.45276 * 178.49695 * 11 10 9 13 13 C 1.36935 * 119.99631 * 60.05752 * 12 11 10 14 14 H 1.07994 * 120.00418 * 322.43365 * 13 12 11 15 15 C 1.38819 * 119.99537 * 142.43772 * 13 12 11 16 16 N 1.31615 * 120.00182 * 338.93986 * 15 13 12 17 17 Si 1.86796 * 119.99826 * 158.94026 * 15 13 12 18 18 H 1.48503 * 109.47260 * 89.99893 * 17 15 13 19 19 H 1.48500 * 109.47430 * 209.99706 * 17 15 13 20 20 H 1.48504 * 109.47427 * 329.99986 * 17 15 13 21 21 C 1.46498 * 120.00153 * 240.06604 * 12 11 10 22 22 C 1.52993 * 109.47722 * 84.39835 * 21 12 11 23 23 O 1.42896 * 109.47312 * 64.99544 * 22 21 12 24 24 C 1.53046 * 109.54009 * 298.51419 * 11 10 9 25 25 C 1.46927 * 120.62719 * 180.95207 * 8 6 5 26 26 N 1.35542 * 125.56018 * 180.31451 * 2 1 3 27 27 C 1.46496 * 125.67881 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46701 * 89.97602 * 1 2 3 29 29 H 1.09000 * 109.47143 * 209.96875 * 1 2 3 30 30 H 1.08998 * 109.47051 * 329.97557 * 1 2 3 31 31 H 1.07994 * 126.06588 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.45587 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.58925 * 246.20290 * 9 8 6 34 34 H 1.09004 * 109.58429 * 6.62545 * 9 8 6 35 35 H 1.08996 * 109.63508 * 294.87050 * 10 9 8 36 36 H 1.08998 * 109.43435 * 174.72651 * 10 9 8 37 37 H 1.09003 * 109.46231 * 58.53141 * 11 10 9 38 38 H 0.96998 * 119.99839 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47195 * 204.40212 * 21 12 11 40 40 H 1.09005 * 109.47157 * 324.39252 * 21 12 11 41 41 H 1.09000 * 109.47774 * 185.00170 * 22 21 12 42 42 H 1.09007 * 109.46630 * 305.00290 * 22 21 12 43 43 H 0.96699 * 114.00729 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.49118 * 301.41616 * 24 11 10 45 45 H 1.09001 * 109.49802 * 181.31860 * 24 11 10 46 46 H 1.08998 * 109.58692 * 353.37686 * 25 8 6 47 47 H 1.09004 * 109.58459 * 113.65520 * 25 8 6 48 48 H 1.09002 * 109.47040 * 269.60541 * 27 26 2 49 49 H 1.08994 * 109.47332 * 29.61327 * 27 26 2 50 50 H 1.09005 * 109.46715 * 149.61281 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6122 -0.7020 0.0004 6 6 4.7860 -1.5816 0.0013 7 8 4.7054 -2.7042 -0.4616 8 7 5.9522 -1.1486 0.5199 9 6 6.0594 0.1965 1.1011 10 6 6.6193 0.0698 2.5261 11 6 7.9398 -0.7026 2.4823 12 7 8.4960 -0.7951 3.8344 13 6 7.7840 -1.4144 4.8267 14 1 6.7110 -1.3011 4.8727 15 6 8.4415 -2.1879 5.7735 16 7 9.6376 -2.6713 5.5128 17 14 7.6287 -2.5427 7.4175 18 1 6.8299 -3.7904 7.3158 19 1 8.6727 -2.7071 8.4607 20 1 6.7372 -1.4127 7.7831 21 6 9.8138 -0.2249 4.1250 22 6 9.6678 1.2670 4.4313 23 8 8.9103 1.4350 5.6313 24 6 7.6914 -2.1104 1.9357 25 6 7.1421 -2.0104 0.5092 26 7 2.2953 -1.1026 -0.0061 27 6 1.8241 -2.4897 -0.0142 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5133 30 1 -0.3633 0.8897 0.5142 31 1 1.9545 2.1267 0.0004 32 1 4.5025 1.3091 0.0004 33 1 6.7307 0.8043 0.4945 34 1 5.0733 0.6599 1.1344 35 1 5.9061 -0.4644 3.1537 36 1 6.7930 1.0642 2.9372 37 1 8.6444 -0.1808 1.8347 38 1 10.0969 -3.2121 6.1742 39 1 10.2471 -0.7321 4.9870 40 1 10.4651 -0.3564 3.2609 41 1 10.6554 1.7099 4.5601 42 1 9.1539 1.7588 3.6054 43 1 8.7776 2.3581 5.8867 44 1 6.9679 -2.6240 2.5690 45 1 8.6281 -2.6677 1.9267 46 1 6.8706 -3.0037 0.1517 47 1 7.8989 -1.5803 -0.1467 48 1 1.7136 -2.8419 1.0114 49 1 0.8615 -2.5435 -0.5226 50 1 2.5469 -3.1158 -0.5374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489350546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:50 Heat of formation + Delta-G solvation = 5.839568 kcal Electronic energy + Delta-G solvation = -30564.969876 eV Core-core repulsion = 26594.602459 eV Total energy + Delta-G solvation = -3970.367417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.59215 -39.40740 -37.42948 -36.13988 -34.67701 -33.11201 -32.18585 -31.69417 -30.52238 -30.27348 -27.79855 -26.72460 -26.58548 -24.80936 -23.43165 -22.59198 -21.56512 -20.60143 -20.13168 -19.36967 -18.87641 -17.00908 -16.59070 -16.33146 -15.96786 -15.69365 -15.25547 -14.82757 -14.65473 -14.38305 -13.95223 -13.80401 -13.54178 -13.40053 -13.33583 -13.29863 -13.04334 -12.83200 -12.77022 -12.48273 -12.26004 -12.09208 -12.02460 -11.94141 -11.43794 -11.28689 -11.10806 -10.89655 -10.70084 -10.58703 -10.45401 -10.03821 -9.86642 -9.80277 -9.64689 -9.42516 -9.07515 -8.71151 -8.40373 -8.32295 -7.97910 -6.46405 -5.68446 -3.21345 1.55084 2.54101 2.68430 3.36783 3.45032 3.48323 3.52031 3.58347 4.57778 4.60470 4.71421 4.74690 4.97041 5.13683 5.18717 5.28332 5.30239 5.30976 5.35228 5.45186 5.48983 5.51505 5.58086 5.62607 5.65124 5.78259 5.87488 6.01943 6.03294 6.05490 6.10407 6.14967 6.22743 6.32365 6.43274 6.50638 6.65641 6.72013 6.80055 6.85124 6.91833 6.98386 7.17264 7.18057 7.26853 7.64288 7.68388 7.94425 8.34213 8.48081 8.67220 9.29747 9.93563 10.49224 11.34805 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003330 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.004885 B = 8406.309364 C = 8608.591688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.033 3.967 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.039 4.039 6 C 0.586 3.414 7 O -0.560 6.560 8 N -0.586 5.586 9 C 0.075 3.925 10 C -0.137 4.137 11 C 0.176 3.824 12 N -0.571 5.571 13 C -0.233 4.233 14 H 0.054 0.946 15 C 0.016 3.984 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.146 3.854 22 C 0.059 3.941 23 O -0.544 6.544 24 C -0.132 4.132 25 C 0.114 3.886 26 N -0.408 5.408 27 C 0.060 3.940 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.251 0.749 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.349 0.651 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 8.631 -11.864 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.229 4.229 4 C -0.179 4.179 5 C -0.152 4.152 6 C 0.375 3.625 7 O -0.441 6.441 8 N -0.317 5.317 9 C -0.048 4.048 10 C -0.177 4.177 11 C 0.069 3.931 12 N -0.290 5.290 13 C -0.363 4.363 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.020 3.980 22 C -0.022 4.022 23 O -0.345 6.345 24 C -0.172 4.172 25 C -0.008 4.008 26 N -0.082 5.082 27 C -0.081 4.081 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.192 0.808 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.885 6.853 -12.012 18.235 hybrid contribution -0.216 0.519 1.031 1.174 sum -12.101 7.373 -10.981 17.927 Atomic orbital electron populations 1.20356 0.87968 1.03388 1.02607 1.20519 0.93662 0.85907 1.08211 1.20615 0.92515 0.97634 1.12178 1.21635 0.97872 0.92184 1.06170 1.20049 0.84205 0.93780 1.17207 1.17004 0.82059 0.85362 0.78061 1.90733 1.84432 1.20364 1.48551 1.47798 1.09811 1.16795 1.57337 1.22857 1.03696 0.82931 0.95291 1.22412 1.00010 1.01379 0.93921 1.20336 0.92467 0.92715 0.87616 1.43700 1.17792 1.63743 1.03774 1.18715 0.91150 1.22209 1.04199 0.92816 1.25027 0.97029 0.96385 0.99888 1.69986 1.15082 1.34968 1.33739 0.86447 0.78623 0.77736 0.84763 1.21831 1.21771 1.20415 1.20964 0.87694 0.88479 1.00897 1.23109 0.91661 1.01522 0.85859 1.86854 1.76205 1.28153 1.43306 1.22294 1.01604 1.00348 0.92956 1.21794 0.85162 0.94970 0.98916 1.43726 1.04618 1.06492 1.53365 1.22272 1.01881 0.80069 1.03854 0.90972 0.91729 0.89905 0.84144 0.82524 0.91746 0.87216 0.91363 0.91499 0.93615 0.93892 0.88197 0.94621 0.96319 0.95961 0.80822 0.91103 0.90903 0.89707 0.92023 0.90773 0.89995 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.83 36.01 0.35 -0.28 16 2 C 0.03 0.38 6.87 -81.95 -0.56 -0.19 16 3 C -0.21 -2.35 10.71 -39.98 -0.43 -2.78 16 4 C -0.15 -1.96 8.54 -39.11 -0.33 -2.29 16 5 C -0.04 -0.58 6.52 -81.98 -0.53 -1.11 16 6 C 0.59 9.99 7.55 -12.86 -0.10 9.89 16 7 O -0.56 -10.78 14.39 5.19 0.07 -10.70 16 8 N -0.59 -9.45 2.97 -174.05 -0.52 -9.97 16 9 C 0.07 1.06 5.40 -3.49 -0.02 1.04 16 10 C -0.14 -2.40 5.32 -26.39 -0.14 -2.54 16 11 C 0.18 3.45 2.59 -67.89 -0.18 3.27 16 12 N -0.57 -13.45 2.32 -165.61 -0.38 -13.84 16 13 C -0.23 -6.24 8.02 -15.06 -0.12 -6.36 16 14 H 0.05 1.49 6.89 -52.49 -0.36 1.13 16 15 C 0.02 0.44 4.91 -17.43 -0.09 0.35 16 16 N -0.89 -25.72 11.54 55.49 0.64 -25.08 16 17 Si 0.89 22.48 29.60 -169.99 -5.03 17.45 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.15 3.33 5.56 -4.05 -0.02 3.30 16 22 C 0.06 1.12 7.39 37.15 0.27 1.40 16 23 O -0.54 -11.18 13.40 -35.23 -0.47 -11.65 16 24 C -0.13 -2.59 5.31 -26.61 -0.14 -2.73 16 25 C 0.11 1.89 6.43 -3.71 -0.02 1.86 16 26 N -0.41 -5.40 3.16 -115.62 -0.37 -5.77 16 27 C 0.06 0.67 10.45 59.84 0.63 1.29 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.16 1.72 5.80 -52.49 -0.30 1.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.44 3.40 -51.93 -0.18 1.26 16 35 H 0.07 1.38 7.06 -51.93 -0.37 1.02 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.83 7.87 -51.93 -0.41 0.43 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.10 2.66 5.59 -51.93 -0.29 2.37 16 40 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.35 5.18 9.12 45.56 0.42 5.59 16 44 H 0.07 1.60 7.71 -51.93 -0.40 1.20 16 45 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.65 7.57 -51.93 -0.39 0.25 16 50 H 0.11 1.37 6.21 -51.93 -0.32 1.05 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -33.49 389.61 -8.76 -42.26 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.15 Total: 7.29 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.43 Total: 4.14 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.63 Total: -54.66 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.40 Total: -22.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.49 -8.76 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489350546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.098 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds