Wall clock time and date at job start Tue Mar 31 2020 18:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 125.56579 * 2 1 4 4 C 1.39841 * 107.86566 * 179.97438 * 3 2 1 5 5 C 1.37877 * 107.08520 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.23127 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99568 * 206.03930 * 6 5 4 8 8 N 1.34774 * 120.00005 * 26.31410 * 6 5 4 9 9 C 1.46918 * 120.63488 * 0.67445 * 8 6 5 10 10 C 1.53622 * 108.54601 * 126.36565 * 9 8 6 11 11 C 1.53039 * 109.24036 * 54.85879 * 10 9 8 12 12 N 1.46499 * 109.45276 * 178.49695 * 11 10 9 13 13 C 1.36935 * 119.99631 * 60.05752 * 12 11 10 14 14 H 1.07994 * 120.00418 * 322.43365 * 13 12 11 15 15 C 1.38819 * 119.99537 * 142.43772 * 13 12 11 16 16 N 1.31615 * 120.00182 * 338.93986 * 15 13 12 17 17 Si 1.86796 * 119.99826 * 158.94026 * 15 13 12 18 18 H 1.48503 * 109.47260 * 89.99893 * 17 15 13 19 19 H 1.48500 * 109.47430 * 209.99706 * 17 15 13 20 20 H 1.48504 * 109.47427 * 329.99986 * 17 15 13 21 21 C 1.46498 * 120.00153 * 240.06604 * 12 11 10 22 22 C 1.52993 * 109.47722 * 84.39835 * 21 12 11 23 23 O 1.42896 * 109.47312 * 64.99544 * 22 21 12 24 24 C 1.53046 * 109.54009 * 298.51419 * 11 10 9 25 25 C 1.46927 * 120.62719 * 180.95207 * 8 6 5 26 26 N 1.35542 * 125.56018 * 180.31451 * 2 1 3 27 27 C 1.46496 * 125.67881 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46701 * 89.97602 * 1 2 3 29 29 H 1.09000 * 109.47143 * 209.96875 * 1 2 3 30 30 H 1.08998 * 109.47051 * 329.97557 * 1 2 3 31 31 H 1.07994 * 126.06588 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.45587 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.58925 * 246.20290 * 9 8 6 34 34 H 1.09004 * 109.58429 * 6.62545 * 9 8 6 35 35 H 1.08996 * 109.63508 * 294.87050 * 10 9 8 36 36 H 1.08998 * 109.43435 * 174.72651 * 10 9 8 37 37 H 1.09003 * 109.46231 * 58.53141 * 11 10 9 38 38 H 0.96998 * 119.99839 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47195 * 204.40212 * 21 12 11 40 40 H 1.09005 * 109.47157 * 324.39252 * 21 12 11 41 41 H 1.09000 * 109.47774 * 185.00170 * 22 21 12 42 42 H 1.09007 * 109.46630 * 305.00290 * 22 21 12 43 43 H 0.96699 * 114.00729 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.49118 * 301.41616 * 24 11 10 45 45 H 1.09001 * 109.49802 * 181.31860 * 24 11 10 46 46 H 1.08998 * 109.58692 * 353.37686 * 25 8 6 47 47 H 1.09004 * 109.58459 * 113.65520 * 25 8 6 48 48 H 1.09002 * 109.47040 * 269.60541 * 27 26 2 49 49 H 1.08994 * 109.47332 * 29.61327 * 27 26 2 50 50 H 1.09005 * 109.46715 * 149.61281 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6122 -0.7020 0.0004 6 6 4.7860 -1.5816 0.0013 7 8 4.7054 -2.7042 -0.4616 8 7 5.9522 -1.1486 0.5199 9 6 6.0594 0.1965 1.1011 10 6 6.6193 0.0698 2.5261 11 6 7.9398 -0.7026 2.4823 12 7 8.4960 -0.7951 3.8344 13 6 7.7840 -1.4144 4.8267 14 1 6.7110 -1.3011 4.8727 15 6 8.4415 -2.1879 5.7735 16 7 9.6376 -2.6713 5.5128 17 14 7.6287 -2.5427 7.4175 18 1 6.8299 -3.7904 7.3158 19 1 8.6727 -2.7071 8.4607 20 1 6.7372 -1.4127 7.7831 21 6 9.8138 -0.2249 4.1250 22 6 9.6678 1.2670 4.4313 23 8 8.9103 1.4350 5.6313 24 6 7.6914 -2.1104 1.9357 25 6 7.1421 -2.0104 0.5092 26 7 2.2953 -1.1026 -0.0061 27 6 1.8241 -2.4897 -0.0142 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5133 30 1 -0.3633 0.8897 0.5142 31 1 1.9545 2.1267 0.0004 32 1 4.5025 1.3091 0.0004 33 1 6.7307 0.8043 0.4945 34 1 5.0733 0.6599 1.1344 35 1 5.9061 -0.4644 3.1537 36 1 6.7930 1.0642 2.9372 37 1 8.6444 -0.1808 1.8347 38 1 10.0969 -3.2121 6.1742 39 1 10.2471 -0.7321 4.9870 40 1 10.4651 -0.3564 3.2609 41 1 10.6554 1.7099 4.5601 42 1 9.1539 1.7588 3.6054 43 1 8.7776 2.3581 5.8867 44 1 6.9679 -2.6240 2.5690 45 1 8.6281 -2.6677 1.9267 46 1 6.8706 -3.0037 0.1517 47 1 7.8989 -1.5803 -0.1467 48 1 1.7136 -2.8419 1.0114 49 1 0.8615 -2.5435 -0.5226 50 1 2.5469 -3.1158 -0.5374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489350546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:49 Heat of formation + Delta-G solvation = -16.699863 kcal Electronic energy + Delta-G solvation = -30565.947259 eV Core-core repulsion = 26594.602459 eV Total energy + Delta-G solvation = -3971.344800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.56482 -40.68309 -38.96602 -37.64530 -36.28480 -34.27972 -33.55663 -32.91608 -31.93343 -31.73026 -29.45951 -27.82783 -27.48977 -26.40805 -24.97922 -23.98380 -22.84697 -21.89848 -21.63090 -20.65397 -19.97562 -18.42036 -18.15164 -17.74825 -17.42233 -16.74064 -16.72757 -16.33460 -15.99429 -15.83079 -15.60580 -15.15229 -14.86878 -14.70190 -14.56344 -14.33335 -14.10752 -13.98226 -13.90134 -13.70681 -13.68246 -13.15378 -13.07307 -13.01867 -12.95076 -12.80624 -12.74845 -12.62371 -12.41487 -12.27216 -12.09209 -11.79615 -11.56550 -11.45052 -11.14367 -10.94345 -10.58725 -10.38153 -9.71712 -9.62777 -8.94099 -8.43275 -7.75032 -5.30312 0.50354 1.41020 1.44397 1.53251 1.53732 1.79165 2.26566 2.32012 2.55599 3.35314 3.49894 3.59808 3.86457 3.91463 3.96442 4.00116 4.18184 4.23544 4.28089 4.30289 4.36744 4.45084 4.50849 4.61092 4.62284 4.64563 4.71405 4.74788 4.80533 4.81729 4.85419 4.91059 4.95670 5.09698 5.12107 5.12655 5.16065 5.22997 5.27648 5.45665 5.61081 5.65038 5.75832 5.84372 5.92201 6.03481 6.31463 6.40898 6.55624 7.08040 7.24211 7.30983 7.99139 8.47449 9.22545 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003330 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.004885 B = 8406.309364 C = 8608.591688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.040 3.960 3 C -0.217 4.217 4 C -0.144 4.144 5 C -0.085 4.085 6 C 0.580 3.420 7 O -0.595 6.595 8 N -0.590 5.590 9 C 0.083 3.917 10 C -0.124 4.124 11 C 0.172 3.828 12 N -0.584 5.584 13 C -0.220 4.220 14 H 0.039 0.961 15 C -0.033 4.033 16 N -0.921 5.921 17 Si 0.940 3.060 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.278 1.278 21 C 0.140 3.860 22 C 0.069 3.931 23 O -0.577 6.577 24 C -0.120 4.120 25 C 0.125 3.875 26 N -0.420 5.420 27 C 0.060 3.940 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.245 0.755 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.375 0.625 44 H 0.028 0.972 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.115 0.885 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 11.767 -13.265 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.240 4.240 4 C -0.170 4.170 5 C -0.197 4.197 6 C 0.371 3.629 7 O -0.478 6.478 8 N -0.320 5.320 9 C -0.038 4.038 10 C -0.164 4.164 11 C 0.066 3.934 12 N -0.303 5.303 13 C -0.351 4.351 14 H 0.056 0.944 15 C -0.229 4.229 16 N -0.566 5.566 17 Si 0.770 3.230 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.014 3.986 22 C -0.011 4.011 23 O -0.382 6.382 24 C -0.160 4.160 25 C 0.002 3.998 26 N -0.094 5.094 27 C -0.081 4.081 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.186 0.814 32 H 0.192 0.808 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.134 0.866 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.552 10.037 -13.414 21.549 hybrid contribution 0.219 -0.400 1.426 1.497 sum -13.333 9.637 -11.988 20.355 Atomic orbital electron populations 1.20522 0.85092 1.04656 1.04022 1.21287 0.95489 0.85261 1.05664 1.21025 0.91879 0.99033 1.12071 1.21942 0.99350 0.91324 1.04367 1.19948 0.84321 0.94403 1.21027 1.17416 0.82768 0.85251 0.77472 1.90704 1.84963 1.21974 1.50191 1.47861 1.09456 1.17364 1.57354 1.22971 1.05161 0.82348 0.93313 1.22226 0.97749 1.00695 0.95736 1.20547 0.93963 0.92881 0.86016 1.43876 1.17888 1.63796 1.04765 1.18717 0.90661 1.20950 1.04782 0.94379 1.25529 0.97777 0.97366 1.02274 1.70093 1.16132 1.36326 1.34085 0.85715 0.77703 0.77323 0.82258 1.21993 1.21998 1.20365 1.20940 0.87185 0.90724 0.99748 1.22882 0.93290 0.98728 0.86211 1.86772 1.76580 1.30886 1.43985 1.22106 0.99497 0.99960 0.94421 1.21604 0.86142 0.95144 0.96927 1.43975 1.04424 1.07489 1.53556 1.22309 1.02653 0.79253 1.03902 0.89334 0.91004 0.88141 0.81437 0.80769 0.88327 0.85707 0.95008 0.90541 0.91084 0.94574 0.92329 0.93510 0.93686 0.93696 0.77883 0.95328 0.92843 0.91099 0.89035 0.90870 0.86643 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.83 71.24 0.70 -0.25 16 2 C 0.04 0.79 6.87 41.34 0.28 1.07 16 3 C -0.22 -4.24 10.71 22.01 0.24 -4.00 16 4 C -0.14 -3.30 8.54 22.57 0.19 -3.11 16 5 C -0.08 -2.45 6.52 40.35 0.26 -2.19 16 6 C 0.58 19.86 7.55 86.45 0.65 20.52 16 7 O -0.59 -23.75 14.39 -4.34 -0.06 -23.81 16 8 N -0.59 -18.60 2.97 -822.79 -2.44 -21.04 16 9 C 0.08 2.16 5.40 86.51 0.47 2.63 16 10 C -0.12 -4.18 5.32 30.82 0.16 -4.02 16 11 C 0.17 6.63 2.59 45.02 0.12 6.74 16 12 N -0.58 -27.62 2.32 -677.88 -1.57 -29.20 16 13 C -0.22 -12.09 8.02 84.04 0.67 -11.42 16 14 H 0.04 2.20 6.89 -2.91 -0.02 2.18 16 15 C -0.03 -1.92 4.91 84.86 0.42 -1.50 16 16 N -0.92 -54.83 11.54 21.65 0.25 -54.58 16 17 Si 0.94 47.49 29.60 68.60 2.03 49.52 16 18 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 19 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 20 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 21 C 0.14 6.32 5.56 86.38 0.48 6.80 16 22 C 0.07 2.46 7.39 71.98 0.53 2.99 16 23 O -0.58 -22.75 13.40 -148.98 -2.00 -24.74 16 24 C -0.12 -4.82 5.31 30.67 0.16 -4.66 16 25 C 0.12 4.12 6.43 86.36 0.56 4.67 16 26 N -0.42 -10.62 3.16 -519.70 -1.64 -12.26 16 27 C 0.06 1.30 10.45 127.77 1.33 2.63 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.18 3.18 5.80 -2.91 -0.02 3.16 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.13 2.92 3.40 -2.38 -0.01 2.92 16 35 H 0.03 1.29 7.06 -2.39 -0.02 1.28 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.40 7.87 -2.39 -0.02 2.38 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.06 3.18 5.59 -2.38 -0.01 3.17 16 40 H 0.05 1.94 8.04 -2.38 -0.02 1.92 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.37 10.20 9.12 -74.06 -0.68 9.53 16 44 H 0.03 1.36 7.71 -2.38 -0.02 1.34 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 2.55 7.00 -2.39 -0.02 2.53 16 47 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 49 H 0.12 1.62 7.57 -2.39 -0.02 1.60 16 50 H 0.08 2.20 6.21 -2.38 -0.01 2.18 16 Total: -1.00 -76.84 389.61 2.07 -74.77 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.28 Total: 24.44 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.23 Total: 16.90 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -5.41 Total: -117.07 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -2.06 Total: -48.55 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -76.84 2.07 -74.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489350546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.068 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds