Wall clock time and date at job start Tue Mar 31 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99505 * 2 1 4 4 O 1.21278 * 120.00622 * 4.79771 * 3 2 1 5 5 C 1.50703 * 119.99610 * 184.79596 * 3 2 1 6 6 C 1.52999 * 109.64056 * 301.93244 * 5 3 2 7 7 C 1.53021 * 109.64129 * 62.35477 * 5 3 2 8 8 C 1.50067 * 110.03612 * 169.18799 * 7 5 3 9 9 C 1.29259 * 124.21688 * 342.64838 * 8 7 5 10 10 C 1.50068 * 124.01883 * 0.73063 * 9 8 7 11 11 C 1.53016 * 110.14562 * 342.73784 * 10 9 8 12 12 C 1.46500 * 120.00217 * 179.97438 * 2 1 3 13 13 C 1.53932 * 113.73292 * 32.87029 * 12 2 1 14 14 N 1.47961 * 86.17839 * 221.91974 * 13 12 2 15 15 C 1.46909 * 110.99520 * 137.58102 * 14 13 12 16 16 C 1.50702 * 109.46849 * 70.64351 * 15 14 13 17 17 O 1.21294 * 120.00300 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99703 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99882 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00040 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99885 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00060 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46780 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.47098 * 209.99690 * 23 21 19 26 26 H 1.48497 * 109.46887 * 330.00196 * 23 21 19 27 27 C 1.47958 * 90.76270 * 24.69092 * 14 13 12 28 28 H 1.09006 * 109.46748 * 84.93799 * 1 2 3 29 29 H 1.08996 * 109.46953 * 204.92712 * 1 2 3 30 30 H 1.08990 * 109.47623 * 324.93558 * 1 2 3 31 31 H 1.08999 * 109.46924 * 177.19012 * 6 5 3 32 32 H 1.09000 * 109.47410 * 297.19180 * 6 5 3 33 33 H 1.08997 * 109.47231 * 57.19501 * 6 5 3 34 34 H 1.08991 * 109.35991 * 289.32684 * 7 5 3 35 35 H 1.09001 * 109.36155 * 49.05183 * 7 5 3 36 36 H 1.07996 * 117.96247 * 162.77900 * 8 7 5 37 37 H 1.08004 * 118.02007 * 180.62172 * 9 8 7 38 38 H 1.09002 * 109.35688 * 222.52935 * 10 9 8 39 39 H 1.09001 * 109.24576 * 102.87983 * 10 9 8 40 40 H 1.09004 * 109.64236 * 289.74888 * 11 10 9 41 41 H 1.09004 * 109.64548 * 169.12347 * 11 10 9 42 42 H 1.08998 * 112.93667 * 164.57903 * 12 2 1 43 43 H 1.09008 * 113.75929 * 336.23724 * 13 12 2 44 44 H 1.08998 * 113.76031 * 107.60343 * 13 12 2 45 45 H 1.09003 * 109.46423 * 190.63621 * 15 14 13 46 46 H 1.08996 * 109.47284 * 310.64126 * 15 14 13 47 47 H 0.97002 * 120.00228 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99713 * 180.02562 * 22 21 19 49 49 H 1.09003 * 113.75971 * 220.98970 * 27 14 13 50 50 H 1.09008 * 113.85793 * 89.63943 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5356 2.2157 0.0878 5 6 3.6419 1.1696 -0.1091 6 6 4.2422 0.3578 1.0404 7 6 4.0614 0.5556 -1.4465 8 6 5.5249 0.7891 -1.6829 9 6 6.2312 1.6703 -1.0541 10 6 5.6889 2.5745 0.0138 11 6 4.1607 2.6120 -0.0535 12 6 2.1976 -1.2687 0.0006 13 6 1.4824 -2.3974 -0.7637 14 7 1.8891 -3.2774 0.3540 15 6 0.7934 -4.1759 0.7420 16 6 0.5832 -5.2068 -0.3370 17 8 1.2774 -5.1940 -1.3315 18 7 -0.3762 -6.1429 -0.1968 19 6 -0.5678 -7.0804 -1.1786 20 1 0.0504 -7.0690 -2.0642 21 6 -1.5565 -8.0459 -1.0339 22 7 -1.7398 -8.9448 -1.9748 23 14 -2.6243 -8.0669 0.4988 24 1 -3.8269 -7.2248 0.2757 25 1 -3.0436 -9.4612 0.7909 26 1 -1.8512 -7.5313 1.6479 27 6 1.9697 -2.1151 1.2659 28 1 -0.3633 0.0907 -1.0237 29 1 -0.3633 -0.9319 0.4331 30 1 -0.3634 0.8410 0.5903 31 1 5.3260 0.3194 0.9309 32 1 3.9894 0.8301 1.9897 33 1 3.8390 -0.6547 1.0196 34 1 3.8647 -0.5163 -1.4295 35 1 3.4877 1.0155 -2.2511 36 1 6.0204 0.1838 -2.4274 37 1 7.2762 1.7606 -1.3115 38 1 6.0818 3.5809 -0.1311 39 1 5.9986 2.2030 0.9906 40 1 3.8464 3.1493 -0.9483 41 1 3.7669 3.1091 0.8331 42 1 3.2480 -1.1528 -0.2664 43 1 0.4041 -2.2589 -0.8438 44 1 1.9517 -2.6498 -1.7146 45 1 1.0470 -4.6753 1.6771 46 1 -0.1209 -3.5976 0.8751 47 1 -0.9311 -6.1534 0.5987 48 1 -2.4303 -9.6186 -1.8739 49 1 2.8284 -2.1420 1.9369 50 1 1.0348 -1.8928 1.7806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499673823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:23 Heat of formation + Delta-G solvation = 9.024143 kcal Electronic energy + Delta-G solvation = -30145.170226 eV Core-core repulsion = 26174.940903 eV Total energy + Delta-G solvation = -3970.229323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58285 -39.84909 -38.23995 -37.88527 -34.99582 -33.96440 -32.79329 -31.74294 -31.18930 -30.11556 -27.70884 -27.24330 -26.16238 -25.68632 -24.06490 -23.42247 -22.25765 -20.32476 -19.52193 -19.27985 -18.41174 -17.82904 -17.10164 -16.63148 -16.17365 -15.85677 -15.78286 -15.21572 -15.07807 -14.80138 -14.74543 -14.23154 -13.89225 -13.74447 -13.49108 -13.32034 -13.24375 -13.01255 -12.89001 -12.71655 -12.53384 -12.38782 -12.21803 -12.09080 -11.96816 -11.90347 -11.70782 -11.27485 -11.21801 -11.16195 -11.01728 -10.72746 -10.64015 -10.36095 -10.01986 -9.73695 -9.61564 -9.25395 -8.89957 -8.83139 -8.44947 -8.22802 -6.35493 -3.87179 2.03212 2.40558 2.71308 2.98558 3.02509 3.11566 3.66212 3.82387 4.05814 4.09349 4.23866 4.27588 4.48095 4.51421 4.65155 4.65777 4.84439 4.96858 4.99291 5.04842 5.08902 5.15737 5.20644 5.25371 5.31464 5.32684 5.35561 5.44816 5.47883 5.53762 5.54989 5.58361 5.63387 5.65521 5.70828 5.78404 5.83955 5.89330 5.94076 6.02345 6.05528 6.23065 6.36780 6.38609 6.67822 6.92389 7.16807 7.52611 7.96369 8.08844 8.54481 8.90116 9.37205 9.76778 10.77510 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002473 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.775056 B =11318.557070 C =11824.912854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.602 5.602 3 C 0.527 3.473 4 O -0.540 6.540 5 C -0.077 4.077 6 C -0.165 4.165 7 C -0.090 4.090 8 C -0.148 4.148 9 C -0.157 4.157 10 C -0.093 4.093 11 C -0.092 4.092 12 C 0.084 3.916 13 C 0.010 3.990 14 N -0.446 5.446 15 C 0.010 3.990 16 C 0.451 3.549 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.018 4.018 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.096 0.904 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.671 21.292 8.211 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.334 5.334 3 C 0.315 3.685 4 O -0.417 6.417 5 C -0.080 4.080 6 C -0.222 4.222 7 C -0.126 4.126 8 C -0.166 4.166 9 C -0.175 4.175 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.020 4.020 13 C -0.120 4.120 14 N -0.169 5.169 15 C -0.123 4.123 16 C 0.237 3.763 17 O -0.441 6.441 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.148 4.148 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.227 21.203 7.417 25.112 hybrid contribution -1.848 -0.051 1.298 2.259 sum 9.379 21.152 8.715 24.725 Atomic orbital electron populations 1.21640 0.79313 1.02794 1.02343 1.47860 1.06782 1.05766 1.73000 1.20597 0.89704 0.83005 0.75199 1.90674 1.70359 1.31223 1.49410 1.20810 0.91102 0.98621 0.97477 1.22408 1.02330 1.00746 0.96732 1.20764 0.94653 1.01722 0.95500 1.21917 0.95247 0.98994 1.00449 1.22005 0.99658 0.97492 0.98376 1.20531 0.95113 0.99138 0.98154 1.21430 0.94554 0.93703 1.03343 1.24037 0.99131 0.81760 0.97045 1.24313 0.99856 0.89671 0.98112 1.68386 1.36458 1.08599 1.03474 1.22493 0.93703 0.96447 0.99617 1.19537 0.83655 0.84362 0.88764 1.90566 1.47572 1.74670 1.31337 1.42214 1.32171 1.28453 1.20118 1.19419 1.17786 1.05792 1.00389 0.86256 1.25043 0.97548 0.95941 0.97600 1.69620 1.33079 1.16372 1.32913 0.86680 0.81205 0.78764 0.82789 1.19654 1.20110 1.19495 1.24622 1.02609 0.91053 0.96494 0.92287 0.91158 0.90612 0.90682 0.92064 0.90101 0.89293 0.90193 0.87380 0.87835 0.90884 0.90529 0.91199 0.90854 0.83724 0.90716 0.87832 0.88796 0.92749 0.79738 0.91567 0.88564 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.17 59.85 0.55 1.39 16 2 N -0.60 -6.47 3.09 -175.29 -0.54 -7.01 16 3 C 0.53 6.21 6.46 -10.98 -0.07 6.14 16 4 O -0.54 -8.07 15.55 5.56 0.09 -7.98 16 5 C -0.08 -0.71 0.50 -155.44 -0.08 -0.79 16 6 C -0.17 -1.32 7.40 37.16 0.27 -1.04 16 7 C -0.09 -0.79 4.56 -28.18 -0.13 -0.92 16 8 C -0.15 -1.19 9.35 -35.85 -0.34 -1.52 16 9 C -0.16 -1.16 9.15 -35.85 -0.33 -1.49 16 10 C -0.09 -0.65 5.49 -28.18 -0.15 -0.81 16 11 C -0.09 -0.83 4.32 -26.52 -0.11 -0.95 16 12 C 0.08 0.88 2.44 -69.64 -0.17 0.70 16 13 C 0.01 0.13 6.11 -2.77 -0.02 0.12 16 14 N -0.45 -6.40 5.95 -239.90 -1.43 -7.83 16 15 C 0.01 0.15 5.31 -4.97 -0.03 0.12 16 16 C 0.45 9.84 7.59 -10.99 -0.08 9.76 16 17 O -0.56 -14.41 15.13 5.55 0.08 -14.33 16 18 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 19 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 23 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 27 C -0.02 -0.18 7.04 -2.77 -0.02 -0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 30 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 31 H 0.07 0.55 5.81 -51.93 -0.30 0.25 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.65 3.22 -51.93 -0.17 0.49 16 34 H 0.09 0.79 5.17 -51.93 -0.27 0.52 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.49 6.99 -51.93 -0.36 0.13 16 40 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 42 H 0.15 1.40 2.71 -51.93 -0.14 1.25 16 43 H 0.07 1.01 6.02 -51.92 -0.31 0.69 16 44 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.05 0.72 7.69 -51.93 -0.40 0.32 16 47 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.10 0.87 7.44 -51.93 -0.39 0.49 16 50 H 0.07 0.71 6.99 -51.92 -0.36 0.35 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -33.30 375.89 -8.49 -41.80 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.42 Total: 10.81 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.95 Total: 2.91 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -1.25 Total: -53.16 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.30 -8.49 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499673823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.823 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds