Wall clock time and date at job start Tue Mar 31 2020 19:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47038 * 104.36321 * 3 2 1 5 5 C 1.52999 * 109.47290 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47343 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00086 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00132 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.63007 * 180.02562 * 8 6 5 10 10 C 1.53190 * 108.77468 * 233.62912 * 9 8 6 11 11 C 1.53042 * 109.31284 * 305.36751 * 10 9 8 12 12 C 1.52996 * 109.45958 * 301.35558 * 11 10 9 13 13 N 1.46904 * 109.45951 * 181.38715 * 11 10 9 14 14 C 1.46899 * 111.00029 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47452 * 60.00137 * 22 20 18 24 24 H 1.48505 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47061 * 299.99710 * 22 20 18 26 26 C 1.53036 * 109.52913 * 61.37242 * 11 10 9 27 27 C 1.46922 * 120.63187 * 0.02562 * 8 6 5 28 28 H 4.44649 * 5.63292 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47225 * 344.36744 * 3 2 1 30 30 H 1.09003 * 109.47202 * 224.35939 * 3 2 1 31 31 H 1.09007 * 109.47143 * 59.99725 * 4 3 2 32 32 H 1.09008 * 109.47247 * 299.99833 * 4 3 2 33 33 H 1.09007 * 109.47044 * 59.99919 * 5 4 3 34 34 H 1.08994 * 109.47160 * 300.00108 * 5 4 3 35 35 H 1.09004 * 109.58740 * 113.84680 * 9 8 6 36 36 H 1.08992 * 109.70422 * 353.48901 * 9 8 6 37 37 H 1.09004 * 109.49944 * 185.41455 * 10 9 8 38 38 H 1.09005 * 109.52663 * 65.33023 * 10 9 8 39 39 H 1.09001 * 109.47165 * 300.02841 * 12 11 10 40 40 H 1.08995 * 109.47323 * 60.02794 * 12 11 10 41 41 H 1.09004 * 109.47010 * 180.02562 * 12 11 10 42 42 H 1.00902 * 111.00190 * 56.00997 * 13 11 10 43 43 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 44 44 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 45 45 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 46 46 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49835 * 58.58078 * 26 11 10 48 48 H 1.09002 * 109.49904 * 178.67607 * 26 11 10 49 49 H 1.08998 * 109.58884 * 246.15661 * 27 8 6 50 50 H 1.09003 * 109.58454 * 6.44451 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3587 -1.3974 5 6 4.6858 0.3601 -1.3973 6 6 5.1880 0.7121 -2.7739 7 8 4.3998 0.9400 -3.6670 8 7 6.5130 0.7747 -3.0122 9 6 7.0178 1.1172 -4.3489 10 6 7.9963 0.0284 -4.8003 11 6 9.0876 -0.1422 -3.7410 12 6 9.8156 1.1884 -3.5403 13 7 10.0464 -1.1623 -4.1859 14 6 11.1112 -1.3531 -3.1921 15 6 12.0730 -2.4048 -3.6819 16 8 11.8892 -2.9429 -4.7533 17 7 13.1368 -2.7483 -2.9291 18 6 14.0120 -3.7047 -3.3749 19 1 13.8489 -4.1832 -4.3292 20 6 15.1090 -4.0583 -2.5989 21 7 15.3073 -3.4765 -1.4375 22 14 16.3020 -5.3610 -3.2068 23 1 16.8993 -4.9233 -4.4939 24 1 17.3780 -5.5544 -2.2017 25 1 15.5768 -6.6413 -3.4075 26 6 8.4532 -0.5807 -2.4191 27 6 7.4801 0.5018 -1.9404 28 1 -1.0500 0.0002 0.0002 29 1 3.0098 -0.9888 0.2769 30 1 3.0090 0.7356 0.7185 31 1 2.7920 1.3482 -1.6745 32 1 2.7928 -0.3762 -2.1160 33 1 5.0500 -0.6293 -1.1201 34 1 5.0485 1.0951 -0.6789 35 1 7.5321 2.0775 -4.3103 36 1 6.1867 1.1758 -5.0517 37 1 8.4510 0.3179 -5.7477 38 1 7.4612 -0.9129 -4.9262 39 1 10.2679 1.5007 -4.4816 40 1 9.1044 1.9456 -3.2102 41 1 10.5932 1.0670 -2.7861 42 1 10.4318 -0.9273 -5.0883 43 1 11.6437 -0.4134 -3.0452 44 1 10.6730 -1.6739 -2.2470 45 1 13.2835 -2.3182 -2.0721 46 1 16.0729 -3.7237 -0.8956 47 1 7.9135 -1.5160 -2.5672 48 1 9.2332 -0.7248 -1.6714 49 1 8.0321 1.4119 -1.7058 50 1 6.9526 0.1549 -1.0519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502777221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:52 Heat of formation + Delta-G solvation = -26.160160 kcal Electronic energy + Delta-G solvation = -28602.754010 eV Core-core repulsion = 24630.998981 eV Total energy + Delta-G solvation = -3971.755029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74602 -39.01513 -37.90627 -35.97077 -35.33377 -33.91618 -32.83974 -31.72281 -31.23907 -31.02683 -28.55561 -27.61147 -26.72951 -24.65302 -23.91295 -23.43801 -22.15957 -20.01473 -19.23047 -18.67687 -18.10430 -17.89708 -17.33591 -16.36714 -16.28545 -16.02146 -15.34349 -15.16746 -14.85256 -14.69782 -14.58898 -14.27022 -14.14377 -13.99414 -13.70141 -13.59491 -13.14692 -13.00735 -12.77283 -12.50911 -12.32946 -12.13292 -12.01027 -11.81887 -11.81359 -11.56614 -11.38661 -11.33412 -11.23621 -11.03254 -10.78106 -10.55553 -10.45699 -10.42145 -10.39928 -10.22293 -9.94852 -9.51384 -8.87175 -8.47150 -8.05241 -7.96938 -6.43283 -3.84027 2.40898 2.45833 2.52782 2.77130 3.19028 3.24739 3.29221 3.89255 3.99032 4.03463 4.20017 4.26220 4.45931 4.61750 4.63367 4.70040 4.83787 4.90353 5.02878 5.05470 5.08950 5.11213 5.15675 5.18379 5.24321 5.24718 5.30719 5.38938 5.48316 5.55655 5.64016 5.70274 5.72106 5.75296 5.78998 5.83771 5.92233 5.98330 5.99622 6.10176 6.25453 6.28344 6.33253 7.15964 7.23487 7.30564 7.53595 7.64689 7.95213 8.04825 8.59942 9.16565 9.52830 10.04587 10.74344 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.001900 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.316510 B =14735.311261 C =15606.220998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.515 3.485 7 O -0.544 6.544 8 N -0.610 5.610 9 C 0.113 3.887 10 C -0.120 4.120 11 C 0.115 3.885 12 C -0.190 4.190 13 N -0.657 5.657 14 C 0.047 3.953 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.125 4.125 27 C 0.106 3.894 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.350 0.650 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.176 12.585 5.451 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.304 3.696 7 O -0.422 6.422 8 N -0.344 5.344 9 C -0.010 4.010 10 C -0.158 4.158 11 C 0.023 3.977 12 C -0.249 4.249 13 N -0.289 5.289 14 C -0.086 4.086 15 C 0.225 3.775 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.164 4.164 27 C -0.017 4.017 28 H 0.233 0.767 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.170 0.830 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.907 11.769 4.610 24.430 hybrid contribution 1.333 0.385 0.291 1.418 sum -19.574 12.153 4.901 23.555 Atomic orbital electron populations 1.24924 0.96028 1.01263 1.00723 1.23101 0.94585 1.00326 1.00502 1.18776 0.84898 1.03175 0.98242 1.21288 0.92937 1.03757 0.95740 1.21722 0.97332 1.04104 0.94984 1.20661 0.81684 0.76563 0.90706 1.90697 1.54787 1.49873 1.46812 1.48151 1.05505 1.69230 1.11506 1.21638 0.97940 0.97460 0.83978 1.21907 0.96028 0.99751 0.98161 1.20855 0.92558 0.89579 0.94698 1.22717 1.01183 0.98487 1.02483 1.60242 1.17214 1.45958 1.05484 1.21751 0.92533 0.97728 0.96561 1.19849 0.83739 0.86990 0.86879 1.90525 1.75561 1.57227 1.23440 1.41849 1.22088 1.36289 1.19817 1.19656 1.03035 1.15166 1.05135 0.88002 1.25248 0.98325 0.98796 0.95492 1.69599 1.30384 1.42929 1.11446 0.85923 0.79391 0.80687 0.78248 1.19931 1.20979 1.19894 1.22026 0.98631 0.98778 0.96935 1.21886 0.90967 0.99090 0.89803 0.76713 0.89335 0.89450 0.90804 0.90683 0.88397 0.88626 0.91375 0.88936 0.90622 0.90445 0.92414 0.91948 0.91868 0.82972 0.93582 0.89528 0.77520 0.91841 0.90341 0.90133 0.90903 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.19 -1.58 13.34 -37.12 -0.50 -2.08 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.75 4.46 -26.73 -0.12 -0.87 16 5 C -0.14 -0.92 4.05 -27.89 -0.11 -1.03 16 6 C 0.52 5.27 7.70 -10.99 -0.08 5.19 16 7 O -0.54 -7.66 15.40 5.56 0.09 -7.58 16 8 N -0.61 -5.59 2.97 -172.75 -0.51 -6.10 16 9 C 0.11 1.08 5.96 -3.71 -0.02 1.06 16 10 C -0.12 -1.26 5.16 -26.61 -0.14 -1.40 16 11 C 0.11 1.26 0.71 -131.56 -0.09 1.17 16 12 C -0.19 -1.83 7.47 37.16 0.28 -1.56 16 13 N -0.66 -9.91 5.71 -101.17 -0.58 -10.49 16 14 C 0.05 0.77 5.38 -4.98 -0.03 0.74 16 15 C 0.44 10.13 7.82 -10.98 -0.09 10.05 16 16 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 17 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 18 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.13 -1.21 4.71 -26.59 -0.13 -1.34 16 27 C 0.11 0.76 5.88 -3.69 -0.02 0.74 16 28 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.07 0.69 8.10 -51.92 -0.42 0.27 16 33 H 0.10 0.50 7.70 -51.93 -0.40 0.10 16 34 H 0.10 0.42 7.94 -51.93 -0.41 0.00 16 35 H 0.07 0.58 6.69 -51.93 -0.35 0.23 16 36 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 41 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 42 H 0.35 5.60 8.42 -39.29 -0.33 5.27 16 43 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 44 H 0.09 1.31 6.27 -51.93 -0.33 0.98 16 45 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.77 6.33 -51.93 -0.33 0.44 16 49 H 0.07 0.47 6.69 -51.93 -0.35 0.12 16 50 H 0.09 0.44 5.93 -51.93 -0.31 0.14 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -33.90 398.74 -7.87 -41.76 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.72 Total: 12.22 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.89 Total: 1.39 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.42 Total: -54.08 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.15 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.90 -7.87 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502777221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.604 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds