Wall clock time and date at job start Tue Mar 31 2020 19:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47038 * 104.36321 * 3 2 1 5 5 C 1.52999 * 109.47290 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47343 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00086 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00132 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.63007 * 180.02562 * 8 6 5 10 10 C 1.53190 * 108.77468 * 233.62912 * 9 8 6 11 11 C 1.53042 * 109.31284 * 305.36751 * 10 9 8 12 12 C 1.52996 * 109.45958 * 301.35558 * 11 10 9 13 13 N 1.46904 * 109.45951 * 181.38715 * 11 10 9 14 14 C 1.46899 * 111.00029 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47452 * 60.00137 * 22 20 18 24 24 H 1.48505 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47061 * 299.99710 * 22 20 18 26 26 C 1.53036 * 109.52913 * 61.37242 * 11 10 9 27 27 C 1.46922 * 120.63187 * 0.02562 * 8 6 5 28 28 H 4.44649 * 5.63292 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47225 * 344.36744 * 3 2 1 30 30 H 1.09003 * 109.47202 * 224.35939 * 3 2 1 31 31 H 1.09007 * 109.47143 * 59.99725 * 4 3 2 32 32 H 1.09008 * 109.47247 * 299.99833 * 4 3 2 33 33 H 1.09007 * 109.47044 * 59.99919 * 5 4 3 34 34 H 1.08994 * 109.47160 * 300.00108 * 5 4 3 35 35 H 1.09004 * 109.58740 * 113.84680 * 9 8 6 36 36 H 1.08992 * 109.70422 * 353.48901 * 9 8 6 37 37 H 1.09004 * 109.49944 * 185.41455 * 10 9 8 38 38 H 1.09005 * 109.52663 * 65.33023 * 10 9 8 39 39 H 1.09001 * 109.47165 * 300.02841 * 12 11 10 40 40 H 1.08995 * 109.47323 * 60.02794 * 12 11 10 41 41 H 1.09004 * 109.47010 * 180.02562 * 12 11 10 42 42 H 1.00902 * 111.00190 * 56.00997 * 13 11 10 43 43 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 44 44 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 45 45 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 46 46 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49835 * 58.58078 * 26 11 10 48 48 H 1.09002 * 109.49904 * 178.67607 * 26 11 10 49 49 H 1.08998 * 109.58884 * 246.15661 * 27 8 6 50 50 H 1.09003 * 109.58454 * 6.44451 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3587 -1.3974 5 6 4.6858 0.3601 -1.3973 6 6 5.1880 0.7121 -2.7739 7 8 4.3998 0.9400 -3.6670 8 7 6.5130 0.7747 -3.0122 9 6 7.0178 1.1172 -4.3489 10 6 7.9963 0.0284 -4.8003 11 6 9.0876 -0.1422 -3.7410 12 6 9.8156 1.1884 -3.5403 13 7 10.0464 -1.1623 -4.1859 14 6 11.1112 -1.3531 -3.1921 15 6 12.0730 -2.4048 -3.6819 16 8 11.8892 -2.9429 -4.7533 17 7 13.1368 -2.7483 -2.9291 18 6 14.0120 -3.7047 -3.3749 19 1 13.8489 -4.1832 -4.3292 20 6 15.1090 -4.0583 -2.5989 21 7 15.3073 -3.4765 -1.4375 22 14 16.3020 -5.3610 -3.2068 23 1 16.8993 -4.9233 -4.4939 24 1 17.3780 -5.5544 -2.2017 25 1 15.5768 -6.6413 -3.4075 26 6 8.4532 -0.5807 -2.4191 27 6 7.4801 0.5018 -1.9404 28 1 -1.0500 0.0002 0.0002 29 1 3.0098 -0.9888 0.2769 30 1 3.0090 0.7356 0.7185 31 1 2.7920 1.3482 -1.6745 32 1 2.7928 -0.3762 -2.1160 33 1 5.0500 -0.6293 -1.1201 34 1 5.0485 1.0951 -0.6789 35 1 7.5321 2.0775 -4.3103 36 1 6.1867 1.1758 -5.0517 37 1 8.4510 0.3179 -5.7477 38 1 7.4612 -0.9129 -4.9262 39 1 10.2679 1.5007 -4.4816 40 1 9.1044 1.9456 -3.2102 41 1 10.5932 1.0670 -2.7861 42 1 10.4318 -0.9273 -5.0883 43 1 11.6437 -0.4134 -3.0452 44 1 10.6730 -1.6739 -2.2470 45 1 13.2835 -2.3182 -2.0721 46 1 16.0729 -3.7237 -0.8956 47 1 7.9135 -1.5160 -2.5672 48 1 9.2332 -0.7248 -1.6714 49 1 8.0321 1.4119 -1.7058 50 1 6.9526 0.1549 -1.0519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502777221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:51 Heat of formation + Delta-G solvation = -49.733060 kcal Electronic energy + Delta-G solvation = -28603.776208 eV Core-core repulsion = 24630.998981 eV Total energy + Delta-G solvation = -3972.777227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55208 -40.28068 -39.34813 -36.60194 -36.34288 -35.82458 -33.54275 -33.24796 -32.52675 -31.94058 -29.27736 -28.34043 -28.14245 -26.19501 -24.72536 -24.37574 -22.90179 -21.06875 -20.70056 -19.87909 -19.31765 -18.81379 -18.25841 -17.61312 -16.97652 -16.92252 -16.69969 -16.36027 -16.07409 -15.80211 -15.65223 -15.52154 -15.16881 -15.00350 -14.65110 -14.60222 -14.20944 -13.91368 -13.65685 -13.51549 -13.45600 -13.21516 -13.18189 -12.92349 -12.82933 -12.69751 -12.42740 -12.40655 -12.30264 -12.11645 -12.09577 -11.91846 -11.65146 -11.48648 -11.26672 -11.13483 -10.95269 -10.73726 -10.32190 -9.99686 -9.64299 -9.23209 -8.45345 -5.93710 1.40434 1.42647 1.53019 1.66037 1.84609 1.94185 2.07488 2.09811 2.30168 2.91789 3.22068 3.47547 3.51338 3.58369 3.74638 3.86643 4.09576 4.11096 4.12069 4.18223 4.29485 4.33036 4.38526 4.46020 4.52748 4.57672 4.60907 4.64770 4.70355 4.70630 4.76522 4.82176 4.84509 4.94224 4.97617 5.03503 5.17138 5.21870 5.22895 5.28284 5.34273 5.42081 5.48031 5.57496 5.93923 6.18105 6.44158 6.45135 6.62485 6.73780 7.14573 7.20645 7.58659 8.14713 8.71581 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.001900 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.316510 B =14735.311261 C =15606.220998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.093 4.093 5 C -0.134 4.134 6 C 0.507 3.493 7 O -0.593 6.593 8 N -0.609 5.609 9 C 0.117 3.883 10 C -0.113 4.113 11 C 0.115 3.885 12 C -0.184 4.184 13 N -0.675 5.675 14 C 0.065 3.935 15 C 0.435 3.565 16 O -0.627 6.627 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.125 4.125 27 C 0.108 3.892 28 H 0.238 0.762 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.342 0.658 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 13.609 7.794 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.131 4.131 5 C -0.173 4.173 6 C 0.297 3.703 7 O -0.474 6.474 8 N -0.342 5.342 9 C -0.007 4.007 10 C -0.152 4.152 11 C 0.024 3.976 12 C -0.242 4.242 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.558 5.558 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.164 4.164 27 C -0.014 4.014 28 H 0.255 0.745 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.160 0.840 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.595 12.813 6.998 25.244 hybrid contribution 1.172 0.071 -0.497 1.275 sum -19.422 12.883 6.502 24.197 Atomic orbital electron populations 1.25708 0.97135 1.00964 1.00231 1.23869 0.95899 1.00771 1.01024 1.18866 0.83676 1.04654 0.97555 1.21169 0.93954 1.01918 0.96100 1.21770 0.96205 1.06156 0.93168 1.21381 0.81563 0.75608 0.91699 1.90680 1.56002 1.52099 1.48606 1.48261 1.05722 1.68502 1.11676 1.21544 0.97054 0.97743 0.84315 1.21823 0.95951 0.98993 0.98446 1.20972 0.91681 0.89510 0.95429 1.22645 1.01409 0.97797 1.02395 1.60253 1.17101 1.48359 1.04902 1.21585 0.91689 0.96237 0.97158 1.21010 0.83634 0.87156 0.85877 1.90493 1.76513 1.58958 1.25374 1.41903 1.22504 1.36249 1.20274 1.19613 1.04936 1.17022 1.05023 0.90555 1.25977 0.99196 1.00321 0.95501 1.69651 1.30869 1.43481 1.11847 0.85030 0.77496 0.78028 0.78024 1.19823 1.19396 1.19915 1.22032 0.99177 0.98965 0.96192 1.22074 0.90405 0.99130 0.89825 0.74535 0.87845 0.87280 0.92594 0.93254 0.86285 0.85300 0.89554 0.90757 0.90521 0.92827 0.92851 0.89867 0.91765 0.83961 0.91258 0.87486 0.76904 0.91292 0.92129 0.89377 0.88884 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.37 19.25 74.32 1.43 -1.94 16 2 C -0.22 -3.51 13.34 31.13 0.42 -3.10 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.09 -1.33 4.46 30.59 0.14 -1.19 16 5 C -0.13 -1.38 4.05 29.85 0.12 -1.26 16 6 C 0.51 9.73 7.70 87.66 0.67 10.40 16 7 O -0.59 -17.02 15.40 -3.03 -0.05 -17.06 16 8 N -0.61 -9.90 2.97 -818.85 -2.43 -12.33 16 9 C 0.12 2.12 5.96 86.36 0.51 2.64 16 10 C -0.11 -2.34 5.16 30.67 0.16 -2.18 16 11 C 0.11 2.33 0.71 3.55 0.00 2.34 16 12 C -0.18 -3.03 7.47 71.98 0.54 -2.49 16 13 N -0.67 -19.93 5.71 -474.01 -2.71 -22.64 16 14 C 0.07 2.07 5.38 85.56 0.46 2.53 16 15 C 0.44 20.21 7.82 87.66 0.69 20.90 16 16 O -0.63 -34.58 15.78 -3.05 -0.05 -34.62 16 17 N -0.57 -28.66 5.29 -306.99 -1.62 -30.28 16 18 C -0.34 -18.92 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 21 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 22 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.13 -2.10 4.71 30.68 0.14 -1.95 16 27 C 0.11 1.15 5.88 86.38 0.51 1.65 16 28 H 0.24 1.94 7.80 -4.42 -0.03 1.90 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 32 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 33 H 0.12 0.78 7.70 -2.38 -0.02 0.76 16 34 H 0.13 0.52 7.94 -2.39 -0.02 0.50 16 35 H 0.09 1.27 6.69 -2.39 -0.02 1.25 16 36 H 0.07 1.66 7.01 -2.39 -0.02 1.64 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.04 4.98 -2.39 -0.01 1.02 16 41 H 0.06 1.07 6.40 -2.38 -0.02 1.06 16 42 H 0.34 10.99 8.42 -89.69 -0.76 10.24 16 43 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 44 H 0.11 2.99 6.27 -2.39 -0.01 2.98 16 45 H 0.40 18.66 7.90 -92.70 -0.73 17.93 16 46 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.37 6.33 -2.39 -0.02 1.36 16 49 H 0.09 0.71 6.69 -2.39 -0.02 0.70 16 50 H 0.12 0.60 5.93 -2.39 -0.01 0.58 16 Total: -1.00 -76.83 398.74 2.17 -74.67 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.52 Total: 37.67 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.23 Total: 8.25 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -6.48 Total: -113.38 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.09 Total: -51.69 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.83 2.17 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502777221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.935 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds