Wall clock time and date at job start Tue Mar 31 2020 19:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34653 * 125.80121 * 2 1 4 4 H 0.96998 * 124.85169 * 0.06048 * 3 2 1 5 5 C 1.36448 * 110.29716 * 180.29920 * 3 2 1 6 6 C 1.34488 * 108.85507 * 359.74326 * 5 3 2 7 7 C 1.36770 * 125.80023 * 179.86712 * 2 1 3 8 8 C 1.47264 * 126.94385 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99937 * 49.16626 * 8 7 2 10 10 N 1.34780 * 120.00067 * 229.16570 * 8 7 2 11 11 C 1.46926 * 120.62854 * 355.68077 * 10 8 7 12 12 C 1.53199 * 108.88637 * 126.29915 * 11 10 8 13 13 C 1.53346 * 109.14914 * 54.58040 * 12 11 10 14 14 O 1.42908 * 109.41588 * 178.67040 * 13 12 11 15 15 C 1.42898 * 113.99852 * 270.12732 * 14 13 12 16 16 C 1.52995 * 109.46593 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47048 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47237 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99857 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00244 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00097 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00059 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47417 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47229 * 119.99984 * 23 21 19 26 26 H 1.48501 * 109.47003 * 239.99778 * 23 21 19 27 27 C 1.53041 * 109.60760 * 298.70663 * 13 12 11 28 28 C 1.46921 * 120.62984 * 175.66505 * 10 8 7 29 29 H 1.09003 * 109.46773 * 270.12841 * 1 2 3 30 30 H 1.08994 * 109.46982 * 30.13549 * 1 2 3 31 31 H 1.09006 * 109.46533 * 150.13472 * 1 2 3 32 32 H 1.07999 * 125.57167 * 179.73237 * 5 3 2 33 33 H 1.08007 * 126.82859 * 180.02562 * 6 5 3 34 34 H 1.08989 * 109.58947 * 246.15650 * 11 10 8 35 35 H 1.08997 * 109.58868 * 6.44612 * 11 10 8 36 36 H 1.09002 * 109.49100 * 174.66214 * 12 11 10 37 37 H 1.08995 * 109.49633 * 294.75150 * 12 11 10 38 38 H 1.09002 * 109.42081 * 58.74888 * 13 12 11 39 39 H 1.09003 * 109.47072 * 300.00008 * 15 14 13 40 40 H 1.08996 * 109.47168 * 60.00460 * 15 14 13 41 41 H 1.08998 * 109.47633 * 299.99917 * 16 15 14 42 42 H 1.09004 * 109.47765 * 60.00211 * 16 15 14 43 43 H 1.08995 * 109.47267 * 299.99814 * 17 16 15 44 44 H 1.09010 * 109.46873 * 60.00235 * 17 16 15 45 45 H 0.97001 * 120.00036 * 0.02562 * 18 17 16 46 46 H 0.96993 * 120.00213 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.49851 * 301.42418 * 27 13 12 48 48 H 1.08998 * 109.52462 * 181.34523 * 27 13 12 49 49 H 1.09006 * 109.58698 * 353.41211 * 28 10 8 50 50 H 1.08999 * 109.58966 * 113.70175 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0008 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6152 -0.0054 7 6 2.3071 -1.1093 0.0026 8 6 1.8703 -2.5156 0.0064 9 8 1.0318 -2.8941 -0.7893 10 7 2.3995 -3.3833 0.8915 11 6 3.4799 -2.9652 1.7952 12 6 3.0712 -3.2829 3.2371 13 6 2.7013 -4.7676 3.3395 14 8 2.3488 -5.0773 4.6894 15 6 3.4517 -5.4930 5.4973 16 6 2.9600 -5.7973 6.9138 17 6 4.1406 -6.2431 7.7788 18 7 3.6699 -6.5339 9.1353 19 6 4.5554 -6.9526 10.0922 20 1 5.6009 -7.0680 9.8471 21 6 4.1093 -7.2287 11.3774 22 7 2.8354 -7.0875 11.6763 23 14 5.3174 -7.7991 12.6830 24 1 6.6798 -7.8762 12.0971 25 1 5.3176 -6.8348 13.8124 26 1 4.9151 -9.1403 13.1774 27 6 1.5138 -5.0655 2.4213 28 6 1.9068 -4.7652 0.9713 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8887 -0.5159 31 1 -0.3632 -0.8913 -0.5118 32 1 4.4497 1.4059 -0.0123 33 1 4.5891 -1.2110 -0.0092 34 1 4.3935 -3.5051 1.5469 35 1 3.6491 -1.8934 1.6911 36 1 3.9027 -3.0645 3.9073 37 1 2.2107 -2.6740 3.5139 38 1 3.5547 -5.3753 3.0385 39 1 3.8991 -6.3895 5.0679 40 1 4.1957 -4.6973 5.5337 41 1 2.5123 -4.9012 7.3434 42 1 2.2161 -6.5932 6.8771 43 1 4.5879 -7.1394 7.3491 44 1 4.8849 -5.4475 7.8156 45 1 2.7310 -6.4299 9.3556 46 1 2.5237 -7.2801 12.5744 47 1 0.6678 -4.4399 2.7060 48 1 1.2369 -6.1157 2.5131 49 1 1.0363 -4.8806 0.3255 50 1 2.6914 -5.4518 0.6535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506485262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:38 Heat of formation + Delta-G solvation = -33.071347 kcal Electronic energy + Delta-G solvation = -28304.302091 eV Core-core repulsion = 24332.247370 eV Total energy + Delta-G solvation = -3972.054721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70451 -40.02134 -38.46934 -36.60113 -35.08591 -32.88084 -32.13609 -32.02592 -31.39390 -30.80075 -29.50825 -26.93840 -25.54191 -24.62960 -23.76336 -22.62162 -22.23160 -21.17245 -21.00792 -20.41581 -18.75792 -18.06603 -17.06623 -16.91835 -16.42018 -16.07393 -15.66238 -15.45636 -14.92994 -14.72899 -14.45561 -14.42266 -14.12365 -13.97027 -13.82955 -13.34033 -13.24503 -13.17119 -13.08794 -12.95378 -12.82085 -12.62261 -12.41143 -12.11789 -11.98830 -11.52996 -11.39238 -11.20315 -10.89267 -10.85333 -10.68852 -10.54770 -10.51321 -10.10450 -10.00896 -9.70010 -9.45208 -9.12122 -8.91087 -8.86476 -8.54790 -6.90869 -5.74771 -3.03855 1.56957 2.05795 2.56759 2.87679 3.02952 3.44461 3.49209 3.52200 3.62882 4.35436 4.41321 4.51359 4.60883 4.63149 4.76292 4.79722 4.83145 4.91612 5.00917 5.11919 5.17143 5.18568 5.25640 5.30499 5.34478 5.44394 5.50091 5.52676 5.54237 5.58543 5.63659 5.65175 5.67985 5.78620 5.91694 5.98758 6.07128 6.12987 6.28395 6.30330 6.36925 6.39327 6.54926 6.85559 6.89378 7.02797 7.20095 7.32872 7.71508 8.02897 8.44046 9.54965 10.13273 10.48070 11.48294 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.001692 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.113126 B =16542.951582 C =17032.682360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.091 3.909 3 N -0.553 5.553 4 H 0.416 0.584 5 C -0.012 4.012 6 C -0.171 4.171 7 C -0.228 4.228 8 C 0.597 3.403 9 O -0.547 6.547 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.156 4.156 13 C 0.091 3.909 14 O -0.381 6.381 15 C 0.068 3.932 16 C -0.125 4.125 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.130 4.130 28 C 0.116 3.884 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 17.163 -29.109 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.026 4.026 3 N -0.148 5.148 4 H 0.253 0.747 5 C -0.140 4.140 6 C -0.195 4.195 7 C -0.238 4.238 8 C 0.387 3.613 9 O -0.426 6.426 10 N -0.339 5.339 11 C -0.019 4.019 12 C -0.195 4.195 13 C 0.032 3.968 14 O -0.300 6.300 15 C -0.009 4.009 16 C -0.162 4.162 17 C 0.029 3.971 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.169 4.169 28 C -0.007 4.007 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.019 17.041 -29.379 33.979 hybrid contribution 0.718 0.163 0.944 1.197 sum -0.302 17.204 -28.435 33.236 Atomic orbital electron populations 1.20539 0.87313 1.04447 1.03320 1.20178 0.93513 0.85601 1.03259 1.41555 1.06213 1.08394 1.58666 0.74737 1.21748 0.85711 0.96410 1.10151 1.21980 0.95415 0.93518 1.08589 1.20015 0.93668 0.91868 1.18237 1.17465 0.80076 0.84234 0.79537 1.90755 1.33913 1.78865 1.39052 1.47983 1.37595 1.11561 1.36785 1.21941 0.89113 1.02454 0.88377 1.22496 1.02918 0.97744 0.96347 1.22066 0.97075 0.94392 0.83239 1.87946 1.34151 1.87194 1.20686 1.22518 0.88692 0.97917 0.91735 1.21667 0.99932 1.02385 0.92260 1.20516 0.93601 0.96774 0.86218 1.42355 1.08968 1.81095 1.05346 1.19287 0.90904 1.36798 0.90093 0.91078 1.24771 0.96190 1.02593 0.97621 1.69675 1.13055 1.55453 1.19981 0.86093 0.80070 0.77993 0.81891 1.20548 1.21855 1.21842 1.21983 0.98466 1.03174 0.93249 1.21584 1.00782 0.81713 0.96606 0.90483 0.91278 0.88672 0.81245 0.83609 0.91412 0.87972 0.90308 0.90654 0.92130 0.93410 0.93476 0.91233 0.91198 0.96333 0.96361 0.78181 0.93537 0.90626 0.89788 0.88442 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.23 36.01 0.37 -0.29 16 2 C 0.09 0.74 7.17 -81.88 -0.59 0.15 16 3 N -0.55 -2.96 5.90 -9.11 -0.05 -3.01 16 4 H 0.42 0.92 8.96 -40.82 -0.37 0.56 16 5 C -0.01 -0.07 11.89 -16.82 -0.20 -0.27 16 6 C -0.17 -1.26 8.74 -37.50 -0.33 -1.59 16 7 C -0.23 -2.22 5.24 -103.35 -0.54 -2.76 16 8 C 0.60 6.96 7.34 -12.59 -0.09 6.87 16 9 O -0.55 -7.98 15.50 5.25 0.08 -7.90 16 10 N -0.61 -5.96 2.97 -174.09 -0.52 -6.48 16 11 C 0.10 0.83 5.97 -3.71 -0.02 0.81 16 12 C -0.16 -1.46 5.72 -26.45 -0.15 -1.61 16 13 C 0.09 0.95 2.57 -26.53 -0.07 0.88 16 14 O -0.38 -5.26 9.99 -35.23 -0.35 -5.62 16 15 C 0.07 0.94 5.75 37.16 0.21 1.16 16 16 C -0.12 -2.14 5.70 -26.73 -0.15 -2.30 16 17 C 0.16 3.23 6.26 -4.04 -0.03 3.21 16 18 N -0.73 -19.28 5.60 -59.90 -0.34 -19.62 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.13 -1.27 5.73 -26.61 -0.15 -1.43 16 28 C 0.12 1.07 6.42 -3.71 -0.02 1.04 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.83 7.03 -51.93 -0.36 0.46 16 32 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.15 0.87 7.74 -52.48 -0.41 0.46 16 34 H 0.07 0.46 8.14 -51.94 -0.42 0.03 16 35 H 0.10 0.76 4.52 -51.93 -0.23 0.53 16 36 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 39 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.05 0.60 7.85 -51.93 -0.41 0.19 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 45 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 0.99 7.03 -51.93 -0.36 0.62 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -35.75 402.41 -9.73 -45.48 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.31 Total: 5.23 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.01 Total: -3.72 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.18 Total: -57.18 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.27 Total: -13.51 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.75 -9.73 -45.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506485262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.405 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds