Wall clock time and date at job start Tue Mar 31 2020 19:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34653 * 125.80121 * 2 1 4 4 H 0.96998 * 124.85169 * 0.06048 * 3 2 1 5 5 C 1.36448 * 110.29716 * 180.29920 * 3 2 1 6 6 C 1.34488 * 108.85507 * 359.74326 * 5 3 2 7 7 C 1.36770 * 125.80023 * 179.86712 * 2 1 3 8 8 C 1.47264 * 126.94385 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99937 * 49.16626 * 8 7 2 10 10 N 1.34780 * 120.00067 * 229.16570 * 8 7 2 11 11 C 1.46926 * 120.62854 * 355.68077 * 10 8 7 12 12 C 1.53199 * 108.88637 * 126.29915 * 11 10 8 13 13 C 1.53346 * 109.14914 * 54.58040 * 12 11 10 14 14 O 1.42908 * 109.41588 * 178.67040 * 13 12 11 15 15 C 1.42898 * 113.99852 * 270.12732 * 14 13 12 16 16 C 1.52995 * 109.46593 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47048 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47237 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99857 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00244 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00097 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00059 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47417 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47229 * 119.99984 * 23 21 19 26 26 H 1.48501 * 109.47003 * 239.99778 * 23 21 19 27 27 C 1.53041 * 109.60760 * 298.70663 * 13 12 11 28 28 C 1.46921 * 120.62984 * 175.66505 * 10 8 7 29 29 H 1.09003 * 109.46773 * 270.12841 * 1 2 3 30 30 H 1.08994 * 109.46982 * 30.13549 * 1 2 3 31 31 H 1.09006 * 109.46533 * 150.13472 * 1 2 3 32 32 H 1.07999 * 125.57167 * 179.73237 * 5 3 2 33 33 H 1.08007 * 126.82859 * 180.02562 * 6 5 3 34 34 H 1.08989 * 109.58947 * 246.15650 * 11 10 8 35 35 H 1.08997 * 109.58868 * 6.44612 * 11 10 8 36 36 H 1.09002 * 109.49100 * 174.66214 * 12 11 10 37 37 H 1.08995 * 109.49633 * 294.75150 * 12 11 10 38 38 H 1.09002 * 109.42081 * 58.74888 * 13 12 11 39 39 H 1.09003 * 109.47072 * 300.00008 * 15 14 13 40 40 H 1.08996 * 109.47168 * 60.00460 * 15 14 13 41 41 H 1.08998 * 109.47633 * 299.99917 * 16 15 14 42 42 H 1.09004 * 109.47765 * 60.00211 * 16 15 14 43 43 H 1.08995 * 109.47267 * 299.99814 * 17 16 15 44 44 H 1.09010 * 109.46873 * 60.00235 * 17 16 15 45 45 H 0.97001 * 120.00036 * 0.02562 * 18 17 16 46 46 H 0.96993 * 120.00213 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.49851 * 301.42418 * 27 13 12 48 48 H 1.08998 * 109.52462 * 181.34523 * 27 13 12 49 49 H 1.09006 * 109.58698 * 353.41211 * 28 10 8 50 50 H 1.08999 * 109.58966 * 113.70175 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0008 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6152 -0.0054 7 6 2.3071 -1.1093 0.0026 8 6 1.8703 -2.5156 0.0064 9 8 1.0318 -2.8941 -0.7893 10 7 2.3995 -3.3833 0.8915 11 6 3.4799 -2.9652 1.7952 12 6 3.0712 -3.2829 3.2371 13 6 2.7013 -4.7676 3.3395 14 8 2.3488 -5.0773 4.6894 15 6 3.4517 -5.4930 5.4973 16 6 2.9600 -5.7973 6.9138 17 6 4.1406 -6.2431 7.7788 18 7 3.6699 -6.5339 9.1353 19 6 4.5554 -6.9526 10.0922 20 1 5.6009 -7.0680 9.8471 21 6 4.1093 -7.2287 11.3774 22 7 2.8354 -7.0875 11.6763 23 14 5.3174 -7.7991 12.6830 24 1 6.6798 -7.8762 12.0971 25 1 5.3176 -6.8348 13.8124 26 1 4.9151 -9.1403 13.1774 27 6 1.5138 -5.0655 2.4213 28 6 1.9068 -4.7652 0.9713 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8887 -0.5159 31 1 -0.3632 -0.8913 -0.5118 32 1 4.4497 1.4059 -0.0123 33 1 4.5891 -1.2110 -0.0092 34 1 4.3935 -3.5051 1.5469 35 1 3.6491 -1.8934 1.6911 36 1 3.9027 -3.0645 3.9073 37 1 2.2107 -2.6740 3.5139 38 1 3.5547 -5.3753 3.0385 39 1 3.8991 -6.3895 5.0679 40 1 4.1957 -4.6973 5.5337 41 1 2.5123 -4.9012 7.3434 42 1 2.2161 -6.5932 6.8771 43 1 4.5879 -7.1394 7.3491 44 1 4.8849 -5.4475 7.8156 45 1 2.7310 -6.4299 9.3556 46 1 2.5237 -7.2801 12.5744 47 1 0.6678 -4.4399 2.7060 48 1 1.2369 -6.1157 2.5131 49 1 1.0363 -4.8806 0.3255 50 1 2.6914 -5.4518 0.6535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506485262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:36 Heat of formation + Delta-G solvation = -56.849650 kcal Electronic energy + Delta-G solvation = -28305.333195 eV Core-core repulsion = 24332.247370 eV Total energy + Delta-G solvation = -3973.085825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.24968 -40.78956 -39.43104 -37.64945 -36.77867 -34.31159 -33.28390 -32.54185 -32.33253 -31.51979 -31.12419 -27.57286 -26.94416 -25.72618 -24.53672 -24.20255 -23.07925 -22.42651 -21.65490 -21.27106 -19.49437 -19.12428 -18.57839 -17.85286 -17.34967 -16.93749 -16.65928 -16.56174 -16.19384 -15.73980 -15.41736 -15.38270 -15.24918 -14.99776 -14.88656 -14.53468 -14.50920 -14.14768 -13.83574 -13.63409 -13.52412 -13.41158 -13.35011 -13.18704 -12.87833 -12.84400 -12.54714 -12.45883 -12.39349 -12.25468 -12.06556 -12.02010 -11.78182 -11.70744 -11.47294 -10.97519 -10.95266 -10.40127 -9.77711 -9.59667 -9.08051 -9.02742 -7.96105 -5.26345 0.92070 1.47908 1.49503 1.56154 1.59775 1.88244 2.23990 2.45895 2.52145 2.68305 3.37660 3.64432 3.77153 3.88621 3.91529 4.01321 4.06783 4.10586 4.15405 4.28493 4.30220 4.31614 4.36664 4.39629 4.48740 4.61506 4.62992 4.66422 4.68055 4.73205 4.78306 4.82665 4.83777 4.86923 4.95027 5.00024 5.05683 5.12584 5.20492 5.24893 5.33650 5.34261 5.49092 5.56706 5.82061 6.02390 6.25580 6.35225 6.42149 6.69583 7.20940 7.31599 8.06996 8.29979 9.28042 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.001692 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.113126 B =16542.951582 C =17032.682360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.080 3.920 3 N -0.541 5.541 4 H 0.432 0.568 5 C 0.002 3.998 6 C -0.189 4.189 7 C -0.262 4.262 8 C 0.590 3.410 9 O -0.590 6.590 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.150 4.150 13 C 0.086 3.914 14 O -0.402 6.402 15 C 0.077 3.923 16 C -0.114 4.114 17 C 0.156 3.844 18 N -0.751 5.751 19 C -0.247 4.247 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.293 1.293 27 C -0.124 4.124 28 C 0.118 3.882 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.206 0.794 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 18.371 -29.834 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.126 4.126 6 C -0.213 4.213 7 C -0.272 4.272 8 C 0.381 3.619 9 O -0.472 6.472 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.189 4.189 13 C 0.029 3.971 14 O -0.322 6.322 15 C 0.000 4.000 16 C -0.152 4.152 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.379 4.379 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.162 4.162 28 C -0.005 4.005 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.175 0.825 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.204 0.796 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.587 18.276 -30.129 35.275 hybrid contribution -0.092 -0.165 1.093 1.110 sum 1.495 18.111 -29.036 34.254 Atomic orbital electron populations 1.20494 0.87006 1.04324 1.03496 1.20324 0.94061 0.86183 1.03297 1.41580 1.06070 1.08639 1.57424 0.72845 1.22316 0.86359 0.96343 1.07617 1.22183 0.94683 0.94570 1.09818 1.20127 0.95472 0.91170 1.20397 1.17889 0.79481 0.85288 0.79203 1.90718 1.35859 1.79727 1.40876 1.48092 1.37677 1.11483 1.36487 1.22052 0.89032 1.03354 0.86989 1.22435 1.02522 0.96532 0.97407 1.22261 0.97748 0.95460 0.81640 1.87912 1.34596 1.87439 1.22233 1.22355 0.88698 0.99225 0.89678 1.21483 0.98299 1.01272 0.94126 1.20672 0.94968 0.97249 0.84183 1.42627 1.08253 1.81172 1.07284 1.19731 0.91641 1.35730 0.90805 0.90193 1.25679 0.98007 1.03531 1.00026 1.69840 1.15070 1.57106 1.20249 0.84991 0.78532 0.76962 0.78756 1.18708 1.21943 1.21989 1.21914 0.97799 1.03064 0.93455 1.21574 1.00962 0.82081 0.95867 0.90148 0.88850 0.91284 0.77721 0.82511 0.89274 0.87195 0.89292 0.92493 0.90273 0.91929 0.91823 0.92391 0.92407 0.95507 0.95415 0.79571 0.93943 0.92470 0.89315 0.89879 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.23 71.24 0.73 -0.57 16 2 C 0.08 1.23 7.17 41.78 0.30 1.53 16 3 N -0.54 -4.61 5.90 -182.72 -1.08 -5.69 16 4 H 0.43 0.78 8.96 -92.71 -0.83 -0.05 16 5 C 0.00 0.02 11.89 83.12 0.99 1.00 16 6 C -0.19 -2.46 8.74 23.62 0.21 -2.25 16 7 C -0.26 -5.02 5.24 -19.04 -0.10 -5.12 16 8 C 0.59 14.17 7.34 86.62 0.64 14.80 16 9 O -0.59 -18.28 15.50 -4.12 -0.06 -18.34 16 10 N -0.61 -11.73 2.97 -822.95 -2.45 -14.18 16 11 C 0.11 1.54 5.97 86.36 0.52 2.05 16 12 C -0.15 -2.57 5.72 30.78 0.18 -2.40 16 13 C 0.09 1.68 2.57 30.72 0.08 1.76 16 14 O -0.40 -10.63 9.99 -148.98 -1.49 -12.11 16 15 C 0.08 1.98 5.75 71.98 0.41 2.39 16 16 C -0.11 -3.84 5.70 30.59 0.17 -3.67 16 17 C 0.16 6.24 6.26 86.38 0.54 6.78 16 18 N -0.75 -39.51 5.60 -343.43 -1.92 -41.43 16 19 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 22 N -0.97 -60.80 13.06 21.65 0.28 -60.51 16 23 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C -0.12 -2.39 5.73 30.67 0.18 -2.22 16 28 C 0.12 2.15 6.42 86.37 0.55 2.71 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.32 7.03 -2.38 -0.02 1.30 16 32 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.16 1.54 7.74 -2.91 -0.02 1.52 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 1.46 4.52 -2.39 -0.01 1.44 16 36 H 0.09 1.36 7.85 -2.39 -0.02 1.34 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 39 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 40 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 46 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 1.78 7.03 -2.38 -0.02 1.77 16 50 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.47 402.41 1.41 -77.06 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.59 Total: 27.41 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 6.70 Total: -0.67 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.17 Total: -121.81 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.55 Total: -30.45 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.47 1.41 -77.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506485262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.209 kcal (2) G-P(sol) polarization free energy of solvation -78.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds