Wall clock time and date at job start Tue Mar 31 2020 18:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 125.56818 * 2 1 4 4 C 1.46693 * 106.33019 * 180.02562 * 3 2 1 5 5 C 1.47263 * 126.93878 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00053 * 142.37907 * 5 4 3 7 7 N 1.34777 * 119.99993 * 322.37587 * 5 4 3 8 8 C 1.47148 * 120.98221 * 174.41111 * 7 5 4 9 9 C 1.53303 * 108.38869 * 129.48737 * 8 7 5 10 10 O 1.42957 * 109.21937 * 52.29831 * 9 8 7 11 11 C 1.42965 * 114.16903 * 297.42092 * 10 9 8 12 12 H 1.08998 * 109.51298 * 302.60515 * 11 10 9 13 13 C 1.52996 * 109.51188 * 182.50684 * 11 10 9 14 14 H 1.09003 * 109.47292 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47204 * 60.00360 * 13 11 10 16 16 N 1.46497 * 109.47479 * 300.00156 * 13 11 10 17 17 C 1.36941 * 120.00214 * 205.00287 * 16 13 11 18 18 H 1.08003 * 119.99900 * 359.97438 * 17 16 13 19 19 C 1.38807 * 119.99995 * 179.97438 * 17 16 13 20 20 N 1.31621 * 120.00256 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46638 * 90.00309 * 21 19 17 23 23 H 1.48502 * 109.47390 * 209.99831 * 21 19 17 24 24 H 1.48493 * 109.47398 * 330.00618 * 21 19 17 25 25 C 1.47148 * 120.98254 * 354.42986 * 7 5 4 26 26 C 1.36763 * 106.11514 * 0.26385 * 4 3 2 27 27 C 1.50700 * 125.79723 * 179.71600 * 26 4 3 28 28 N 1.34658 * 108.39909 * 359.57357 * 26 4 3 29 29 C 1.46496 * 124.85277 * 180.18973 * 28 26 4 30 30 H 1.09000 * 109.47054 * 89.97742 * 1 2 3 31 31 H 1.09002 * 109.46616 * 209.97091 * 1 2 3 32 32 H 1.08997 * 109.47349 * 329.97039 * 1 2 3 33 33 H 1.08003 * 126.83437 * 0.06429 * 3 2 1 34 34 H 1.09000 * 109.68323 * 9.76009 * 8 7 5 35 35 H 1.09004 * 109.68090 * 249.20377 * 8 7 5 36 36 H 1.08998 * 109.50619 * 292.38163 * 9 8 7 37 37 H 1.08996 * 109.51191 * 172.22389 * 9 8 7 38 38 H 1.09003 * 109.47110 * 299.99478 * 15 13 11 39 39 H 1.09001 * 109.47031 * 179.97438 * 15 13 11 40 40 H 1.08996 * 109.47026 * 59.99980 * 15 13 11 41 41 H 0.97000 * 119.99954 * 25.00431 * 16 13 11 42 42 H 0.96998 * 120.00134 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.68527 * 110.79191 * 25 7 5 44 44 H 1.09005 * 109.68683 * 350.23738 * 25 7 5 45 45 H 1.09001 * 109.47041 * 90.03163 * 27 26 4 46 46 H 1.09006 * 109.47036 * 210.02555 * 27 26 4 47 47 H 1.08999 * 109.47286 * 330.02248 * 27 26 4 48 48 H 1.09005 * 109.47210 * 270.31605 * 29 28 26 49 49 H 1.08999 * 109.47043 * 30.31091 * 29 28 26 50 50 H 1.08999 * 109.47152 * 150.30975 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6106 -0.0006 5 6 4.8977 1.4303 -0.0003 6 8 5.8674 1.0753 0.6422 7 7 4.9428 2.5739 -0.7121 8 6 6.1066 3.4708 -0.6317 9 6 6.5681 3.7932 -2.0576 10 8 5.4534 4.2661 -2.8174 11 6 4.4019 3.3097 -2.9714 12 1 4.7957 2.4081 -3.4405 13 6 3.2973 3.9016 -3.8491 14 1 2.4962 3.1718 -3.9664 15 6 3.8711 4.2534 -5.2231 16 7 2.7670 5.1120 -3.2168 17 6 1.4929 5.5287 -3.4965 18 1 0.8791 4.9651 -4.1836 19 6 0.9903 6.6753 -2.8970 20 7 -0.2342 7.0761 -3.1662 21 14 2.0517 7.6496 -1.7080 22 1 2.8187 8.6772 -2.4572 23 1 1.1854 8.3146 -0.7018 24 1 2.9949 6.7319 -1.0202 25 6 3.8295 2.9627 -1.5923 26 6 3.5998 -0.7550 -0.0070 27 6 4.7723 -1.7017 -0.0161 28 7 2.3008 -1.1098 -0.0006 29 6 1.8100 -2.4901 -0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3632 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5143 33 1 1.9627 2.1234 0.0010 34 1 6.9125 2.9786 -0.0874 35 1 5.8259 4.3914 -0.1198 36 1 6.9699 2.8929 -2.5224 37 1 7.3395 4.5626 -2.0253 38 1 4.6724 4.9832 -5.1062 39 1 3.0840 4.6747 -5.8485 40 1 4.2656 3.3528 -5.6936 41 1 3.3184 5.6184 -2.6000 42 1 -0.5852 7.8776 -2.7476 43 1 3.3196 3.8320 -1.1772 44 1 3.1274 2.1339 -1.6843 45 1 5.0585 -1.9354 1.0094 46 1 4.4940 -2.6197 -0.5338 47 1 5.6122 -1.2349 -0.5305 48 1 1.6880 -2.8325 -1.0282 49 1 2.5269 -3.1306 0.5131 50 1 0.8499 -2.5343 0.5136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506849010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:42 Heat of formation + Delta-G solvation = -10.574663 kcal Electronic energy + Delta-G solvation = -30841.410911 eV Core-core repulsion = 26870.331720 eV Total energy + Delta-G solvation = -3971.079191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57838 -39.88630 -38.13332 -35.46811 -34.53311 -33.00757 -32.79412 -32.21288 -30.44416 -29.29938 -28.94129 -27.81618 -26.61595 -24.82952 -24.08329 -23.24566 -22.52497 -21.02103 -19.81555 -19.71377 -18.07399 -17.69224 -16.99494 -16.35391 -16.10733 -15.82059 -15.62534 -15.15767 -14.72241 -14.46286 -14.27553 -14.18517 -13.73940 -13.43317 -13.40072 -13.32948 -13.17233 -12.95380 -12.69935 -12.60505 -12.56779 -12.40917 -12.25504 -12.09707 -11.92352 -11.67684 -11.55866 -11.50316 -11.22192 -10.86965 -10.81826 -10.56904 -10.19985 -9.97795 -9.85895 -9.64471 -9.52535 -8.91361 -8.58001 -8.28348 -7.99253 -7.20713 -5.73241 -3.07519 1.82118 2.38319 2.64071 3.14859 3.43155 3.44314 3.48984 3.51166 3.98662 4.46967 4.55744 4.64579 4.72076 4.81430 4.87793 4.96763 5.01275 5.08582 5.11097 5.18840 5.28203 5.30236 5.41172 5.42656 5.50701 5.55514 5.59143 5.65499 5.67590 5.73005 5.75506 5.82366 5.85512 5.91953 5.93206 6.14981 6.18970 6.31555 6.37069 6.51902 6.60252 6.75139 6.80769 7.05262 7.08702 7.18011 7.43759 7.58313 8.03974 8.38462 8.46328 9.26452 9.98968 10.20623 11.45079 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.004321 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.695606 B = 6478.041635 C = 7762.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.014 3.986 3 C -0.160 4.160 4 C -0.227 4.227 5 C 0.597 3.403 6 O -0.557 6.557 7 N -0.609 5.609 8 C 0.077 3.923 9 C 0.049 3.951 10 O -0.366 6.366 11 C 0.074 3.926 12 H 0.058 0.942 13 C 0.190 3.810 14 H 0.067 0.933 15 C -0.161 4.161 16 N -0.742 5.742 17 C -0.240 4.240 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.935 5.935 21 Si 0.881 3.119 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.276 1.276 25 C 0.078 3.922 26 C 0.090 3.910 27 C -0.084 4.084 28 N -0.442 5.442 29 C 0.067 3.933 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 -19.815 5.468 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.183 4.183 4 C -0.237 4.237 5 C 0.388 3.612 6 O -0.437 6.437 7 N -0.342 5.342 8 C -0.046 4.046 9 C -0.028 4.028 10 O -0.284 6.284 11 C 0.014 3.986 12 H 0.076 0.924 13 C 0.079 3.921 14 H 0.085 0.915 15 C -0.221 4.221 16 N -0.386 5.386 17 C -0.370 4.370 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.583 5.583 21 Si 0.711 3.289 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.202 1.202 25 C -0.045 4.045 26 C -0.026 4.026 27 C -0.141 4.141 28 N -0.120 5.120 29 C -0.074 4.074 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.742 -20.119 5.654 22.287 hybrid contribution 0.597 0.695 0.936 1.310 sum 8.339 -19.424 6.590 22.142 Atomic orbital electron populations 1.20350 0.87614 1.03144 1.03038 1.20243 0.93626 0.85274 1.10255 1.21945 0.90309 0.98124 1.07967 1.19982 0.93098 0.92043 1.18618 1.17436 0.86207 0.79569 0.77988 1.90714 1.37293 1.71323 1.44348 1.48007 1.19727 1.21576 1.44868 1.22279 0.89611 0.94228 0.98462 1.22901 0.89608 0.99989 0.90351 1.88042 1.27960 1.39765 1.72630 1.22975 0.88902 0.91769 0.94923 0.92425 1.20215 0.91397 0.89991 0.90448 0.91491 1.22322 1.01297 1.00061 0.98440 1.42742 1.14545 1.27856 1.53463 1.19065 0.88578 1.07038 1.22301 0.89217 1.24609 0.96100 0.98095 1.00072 1.69698 1.15261 1.25979 1.47363 0.86603 0.79980 0.80667 0.81623 1.21147 1.22006 1.20169 1.22749 0.88847 1.02869 0.90017 1.20073 0.84676 0.93699 1.04121 1.20371 0.94060 0.96501 1.03170 1.43379 1.04995 1.06352 1.57255 1.22046 1.01459 0.80521 1.03414 0.90651 0.92086 0.89762 0.83172 0.88469 0.90821 0.93136 0.88061 0.92635 0.92337 0.94590 0.79901 0.93166 0.89310 0.87740 0.90411 0.91882 0.89775 0.90737 0.89848 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.06 36.01 0.36 -0.41 16 2 C 0.01 0.16 6.85 -81.86 -0.56 -0.40 16 3 C -0.16 -2.29 8.59 -37.50 -0.32 -2.62 16 4 C -0.23 -3.44 5.37 -103.35 -0.56 -4.00 16 5 C 0.60 9.95 7.35 -12.59 -0.09 9.86 16 6 O -0.56 -10.26 15.73 5.25 0.08 -10.18 16 7 N -0.61 -9.68 3.02 -173.60 -0.52 -10.20 16 8 C 0.08 1.11 6.65 -3.53 -0.02 1.08 16 9 C 0.05 0.66 6.99 37.31 0.26 0.92 16 10 O -0.37 -6.15 9.22 -35.23 -0.32 -6.48 16 11 C 0.07 1.21 2.53 -26.58 -0.07 1.14 16 12 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 13 C 0.19 3.57 2.73 -67.93 -0.19 3.38 16 14 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 15 C -0.16 -2.87 9.35 37.16 0.35 -2.53 16 16 N -0.74 -17.09 4.09 -53.42 -0.22 -17.31 16 17 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 18 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 20 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 21 Si 0.88 22.30 27.73 -169.99 -4.71 17.58 16 22 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 25 C 0.08 1.27 4.83 -3.54 -0.02 1.26 16 26 C 0.09 1.14 6.88 -81.89 -0.56 0.58 16 27 C -0.08 -0.84 9.23 36.01 0.33 -0.51 16 28 N -0.44 -4.80 3.09 -115.28 -0.36 -5.15 16 29 C 0.07 0.42 10.39 59.84 0.62 1.04 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.43 6.94 -51.93 -0.36 0.07 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.15 2.23 7.36 -52.48 -0.39 1.85 16 34 H 0.10 1.34 7.06 -51.93 -0.37 0.98 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.03 7.68 -51.93 -0.40 0.63 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.37 8.68 5.06 -40.82 -0.21 8.47 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.09 1.67 7.26 -51.93 -0.38 1.30 16 44 H 0.10 1.66 4.91 -51.93 -0.26 1.40 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.46 7.60 -51.93 -0.39 0.07 16 47 H 0.08 0.96 7.61 -51.93 -0.40 0.56 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.40 7.51 -51.93 -0.39 0.01 16 50 H 0.09 0.42 6.90 -51.93 -0.36 0.06 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -34.35 393.06 -8.20 -42.55 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.13 Total: 9.19 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.72 Total: 2.22 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.32 Total: -60.81 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.24 Total: -16.65 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.35 -8.20 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506849010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.973 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds