Wall clock time and date at job start Tue Mar 31 2020 18:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 125.56818 * 2 1 4 4 C 1.46693 * 106.33019 * 180.02562 * 3 2 1 5 5 C 1.47263 * 126.93878 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00053 * 142.37907 * 5 4 3 7 7 N 1.34777 * 119.99993 * 322.37587 * 5 4 3 8 8 C 1.47148 * 120.98221 * 174.41111 * 7 5 4 9 9 C 1.53303 * 108.38869 * 129.48737 * 8 7 5 10 10 O 1.42957 * 109.21937 * 52.29831 * 9 8 7 11 11 C 1.42965 * 114.16903 * 297.42092 * 10 9 8 12 12 H 1.08998 * 109.51298 * 302.60515 * 11 10 9 13 13 C 1.52996 * 109.51188 * 182.50684 * 11 10 9 14 14 H 1.09003 * 109.47292 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47204 * 60.00360 * 13 11 10 16 16 N 1.46497 * 109.47479 * 300.00156 * 13 11 10 17 17 C 1.36941 * 120.00214 * 205.00287 * 16 13 11 18 18 H 1.08003 * 119.99900 * 359.97438 * 17 16 13 19 19 C 1.38807 * 119.99995 * 179.97438 * 17 16 13 20 20 N 1.31621 * 120.00256 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46638 * 90.00309 * 21 19 17 23 23 H 1.48502 * 109.47390 * 209.99831 * 21 19 17 24 24 H 1.48493 * 109.47398 * 330.00618 * 21 19 17 25 25 C 1.47148 * 120.98254 * 354.42986 * 7 5 4 26 26 C 1.36763 * 106.11514 * 0.26385 * 4 3 2 27 27 C 1.50700 * 125.79723 * 179.71600 * 26 4 3 28 28 N 1.34658 * 108.39909 * 359.57357 * 26 4 3 29 29 C 1.46496 * 124.85277 * 180.18973 * 28 26 4 30 30 H 1.09000 * 109.47054 * 89.97742 * 1 2 3 31 31 H 1.09002 * 109.46616 * 209.97091 * 1 2 3 32 32 H 1.08997 * 109.47349 * 329.97039 * 1 2 3 33 33 H 1.08003 * 126.83437 * 0.06429 * 3 2 1 34 34 H 1.09000 * 109.68323 * 9.76009 * 8 7 5 35 35 H 1.09004 * 109.68090 * 249.20377 * 8 7 5 36 36 H 1.08998 * 109.50619 * 292.38163 * 9 8 7 37 37 H 1.08996 * 109.51191 * 172.22389 * 9 8 7 38 38 H 1.09003 * 109.47110 * 299.99478 * 15 13 11 39 39 H 1.09001 * 109.47031 * 179.97438 * 15 13 11 40 40 H 1.08996 * 109.47026 * 59.99980 * 15 13 11 41 41 H 0.97000 * 119.99954 * 25.00431 * 16 13 11 42 42 H 0.96998 * 120.00134 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.68527 * 110.79191 * 25 7 5 44 44 H 1.09005 * 109.68683 * 350.23738 * 25 7 5 45 45 H 1.09001 * 109.47041 * 90.03163 * 27 26 4 46 46 H 1.09006 * 109.47036 * 210.02555 * 27 26 4 47 47 H 1.08999 * 109.47286 * 330.02248 * 27 26 4 48 48 H 1.09005 * 109.47210 * 270.31605 * 29 28 26 49 49 H 1.08999 * 109.47043 * 30.31091 * 29 28 26 50 50 H 1.08999 * 109.47152 * 150.30975 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6106 -0.0006 5 6 4.8977 1.4303 -0.0003 6 8 5.8674 1.0753 0.6422 7 7 4.9428 2.5739 -0.7121 8 6 6.1066 3.4708 -0.6317 9 6 6.5681 3.7932 -2.0576 10 8 5.4534 4.2661 -2.8174 11 6 4.4019 3.3097 -2.9714 12 1 4.7957 2.4081 -3.4405 13 6 3.2973 3.9016 -3.8491 14 1 2.4962 3.1718 -3.9664 15 6 3.8711 4.2534 -5.2231 16 7 2.7670 5.1120 -3.2168 17 6 1.4929 5.5287 -3.4965 18 1 0.8791 4.9651 -4.1836 19 6 0.9903 6.6753 -2.8970 20 7 -0.2342 7.0761 -3.1662 21 14 2.0517 7.6496 -1.7080 22 1 2.8187 8.6772 -2.4572 23 1 1.1854 8.3146 -0.7018 24 1 2.9949 6.7319 -1.0202 25 6 3.8295 2.9627 -1.5923 26 6 3.5998 -0.7550 -0.0070 27 6 4.7723 -1.7017 -0.0161 28 7 2.3008 -1.1098 -0.0006 29 6 1.8100 -2.4901 -0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3632 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5143 33 1 1.9627 2.1234 0.0010 34 1 6.9125 2.9786 -0.0874 35 1 5.8259 4.3914 -0.1198 36 1 6.9699 2.8929 -2.5224 37 1 7.3395 4.5626 -2.0253 38 1 4.6724 4.9832 -5.1062 39 1 3.0840 4.6747 -5.8485 40 1 4.2656 3.3528 -5.6936 41 1 3.3184 5.6184 -2.6000 42 1 -0.5852 7.8776 -2.7476 43 1 3.3196 3.8320 -1.1772 44 1 3.1274 2.1339 -1.6843 45 1 5.0585 -1.9354 1.0094 46 1 4.4940 -2.6197 -0.5338 47 1 5.6122 -1.2349 -0.5305 48 1 1.6880 -2.8325 -1.0282 49 1 2.5269 -3.1306 0.5131 50 1 0.8499 -2.5343 0.5136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506849010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:41 Heat of formation + Delta-G solvation = -32.639789 kcal Electronic energy + Delta-G solvation = -30842.367727 eV Core-core repulsion = 26870.331720 eV Total energy + Delta-G solvation = -3972.036007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52749 -41.11289 -39.44418 -37.12545 -35.80150 -34.25800 -33.78364 -33.64589 -31.98440 -30.58339 -30.05779 -29.05227 -27.44134 -25.83093 -25.62243 -24.81064 -23.77780 -22.12505 -21.25213 -20.82354 -19.77280 -19.08271 -18.13531 -17.64924 -17.19018 -16.86825 -16.63161 -16.37509 -16.33406 -15.92051 -15.73231 -15.16825 -15.11327 -14.74013 -14.56311 -14.30304 -14.27145 -14.07152 -13.98181 -13.75889 -13.64888 -13.54511 -13.29963 -13.15548 -13.03908 -12.96466 -12.83810 -12.58417 -12.49879 -12.47867 -12.38287 -12.11238 -11.79187 -11.71593 -11.50504 -11.13069 -10.98272 -10.89952 -9.69617 -9.44349 -9.21651 -8.95879 -7.96475 -5.26715 0.77811 1.37653 1.40182 1.41720 1.48175 1.74502 2.05072 2.26699 2.52118 2.75323 3.36856 3.58340 3.62789 3.78917 3.79995 3.88162 3.91503 4.03989 4.10817 4.17348 4.24506 4.27565 4.39713 4.42078 4.47703 4.53428 4.61825 4.62974 4.70207 4.71145 4.75350 4.77096 4.80457 4.82130 4.90674 4.99967 5.00860 5.06037 5.12649 5.21015 5.23128 5.42004 5.59806 5.79005 5.84487 6.10196 6.19236 6.29619 6.31915 6.37843 7.13683 7.14944 7.91994 8.11805 9.25142 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.004321 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.695606 B = 6478.041635 C = 7762.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.020 3.980 3 C -0.191 4.191 4 C -0.266 4.266 5 C 0.594 3.406 6 O -0.582 6.582 7 N -0.610 5.610 8 C 0.073 3.927 9 C 0.052 3.948 10 O -0.385 6.385 11 C 0.085 3.915 12 H 0.080 0.920 13 C 0.182 3.818 14 H 0.068 0.932 15 C -0.151 4.151 16 N -0.743 5.743 17 C -0.215 4.215 18 H 0.065 0.935 19 C -0.056 4.056 20 N -0.982 5.982 21 Si 0.941 3.059 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.260 1.260 25 C 0.090 3.910 26 C 0.094 3.906 27 C -0.080 4.080 28 N -0.436 5.436 29 C 0.056 3.944 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.366 0.634 42 H 0.255 0.745 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -22.444 5.617 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.215 4.215 4 C -0.275 4.275 5 C 0.386 3.614 6 O -0.464 6.464 7 N -0.342 5.342 8 C -0.049 4.049 9 C -0.025 4.025 10 O -0.303 6.303 11 C 0.025 3.975 12 H 0.098 0.902 13 C 0.074 3.926 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.387 5.387 17 C -0.346 4.346 18 H 0.083 0.917 19 C -0.248 4.248 20 N -0.634 5.634 21 Si 0.771 3.229 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.185 1.185 25 C -0.033 4.033 26 C -0.024 4.024 27 C -0.137 4.137 28 N -0.112 5.112 29 C -0.083 4.083 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.199 0.801 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.120 0.880 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.103 -22.798 5.789 25.221 hybrid contribution 0.178 1.358 0.864 1.620 sum 9.281 -21.440 6.653 24.291 Atomic orbital electron populations 1.20423 0.85623 1.04286 1.03650 1.20582 0.94813 0.85160 1.08357 1.21873 0.90844 0.98201 1.10576 1.20057 0.92635 0.93312 1.21525 1.17733 0.86490 0.79691 0.77449 1.90679 1.38331 1.71990 1.45356 1.48056 1.19867 1.21689 1.44620 1.22395 0.89292 0.93759 0.99459 1.23087 0.88906 1.01481 0.89024 1.88005 1.28730 1.40395 1.73217 1.22770 0.88332 0.92100 0.94249 0.90226 1.20440 0.92421 0.88358 0.91394 0.91421 1.22174 1.00346 1.01346 0.97250 1.42735 1.13093 1.29144 1.53742 1.19045 0.89682 1.05810 1.20031 0.91679 1.25244 0.97269 0.99709 1.02535 1.69848 1.17259 1.26825 1.49444 0.85610 0.78487 0.79317 0.79536 1.21115 1.22649 1.18504 1.22520 0.89018 1.01748 0.90046 1.20438 0.86149 0.93306 1.02459 1.20410 0.92506 0.97072 1.03715 1.43671 1.04205 1.07855 1.55485 1.22454 1.02817 0.77993 1.05083 0.90188 0.89271 0.90344 0.85060 0.87966 0.91416 0.91843 0.85443 0.93173 0.94356 0.91205 0.80065 0.93609 0.92198 0.87460 0.89934 0.88584 0.91301 0.89126 0.87973 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.06 71.24 0.72 -0.66 16 2 C 0.02 0.45 6.85 40.98 0.28 0.73 16 3 C -0.19 -5.60 8.59 23.62 0.20 -5.40 16 4 C -0.27 -8.02 5.37 -19.04 -0.10 -8.13 16 5 C 0.59 19.88 7.35 86.62 0.64 20.52 16 6 O -0.58 -21.47 15.73 -4.12 -0.06 -21.53 16 7 N -0.61 -19.30 3.02 -821.39 -2.48 -21.78 16 8 C 0.07 2.04 6.65 86.36 0.57 2.62 16 9 C 0.05 1.28 6.99 72.08 0.50 1.78 16 10 O -0.38 -12.21 9.22 -148.98 -1.37 -13.58 16 11 C 0.08 2.66 2.53 30.69 0.08 2.74 16 12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 13 C 0.18 6.71 2.73 44.99 0.12 6.84 16 14 H 0.07 2.49 8.08 -2.39 -0.02 2.47 16 15 C -0.15 -5.17 9.35 71.98 0.67 -4.49 16 16 N -0.74 -34.21 4.09 -322.94 -1.32 -35.53 16 17 C -0.21 -11.89 10.41 84.03 0.87 -11.02 16 18 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 19 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 20 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 21 Si 0.94 46.89 27.73 68.60 1.90 48.79 16 22 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 24 H -0.26 -12.09 6.52 99.48 0.65 -11.45 16 25 C 0.09 2.94 4.83 86.35 0.42 3.36 16 26 C 0.09 2.25 6.88 41.78 0.29 2.54 16 27 C -0.08 -1.44 9.23 71.24 0.66 -0.78 16 28 N -0.44 -8.44 3.09 -518.64 -1.60 -10.04 16 29 C 0.06 0.49 10.39 127.77 1.33 1.82 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 0.97 6.94 -2.39 -0.02 0.96 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 4.19 7.36 -2.91 -0.02 4.17 16 34 H 0.10 2.74 7.06 -2.39 -0.02 2.73 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.37 17.10 5.06 -92.71 -0.47 16.63 16 42 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.06 2.31 7.26 -2.39 -0.02 2.29 16 44 H 0.11 3.46 4.91 -2.38 -0.01 3.45 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.10 1.06 7.60 -2.38 -0.02 1.04 16 47 H 0.07 1.48 7.61 -2.39 -0.02 1.46 16 48 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.10 0.55 7.51 -2.39 -0.02 0.53 16 50 H 0.10 0.57 6.90 -2.39 -0.02 0.55 16 Total: -1.00 -76.33 393.06 3.50 -72.83 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.41 Total: 33.39 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.72 Total: 9.64 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.10 Total: -129.54 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.44 Total: -35.11 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.90 Total: 48.79 kcal Total: -76.33 3.50 -72.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506849010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.194 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds