Wall clock time and date at job start Tue Mar 31 2020 19:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35916 * 117.00221 * 2 1 4 4 C 1.38845 * 120.40907 * 0.02562 * 3 2 1 5 5 N 1.31885 * 121.00699 * 179.97438 * 4 3 2 6 6 C 1.31685 * 121.93575 * 359.97438 * 5 4 3 7 7 C 1.39522 * 120.69241 * 0.02562 * 6 5 4 8 8 C 1.47852 * 120.53108 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99822 * 230.79821 * 8 7 6 10 10 N 1.34775 * 120.00155 * 50.79596 * 8 7 6 11 11 C 1.46501 * 119.99928 * 186.09654 * 10 8 7 12 12 C 1.52997 * 109.47054 * 90.00286 * 11 10 8 13 13 N 1.46505 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00287 * 270.00011 * 13 12 11 15 15 C 1.36935 * 119.99664 * 90.00046 * 13 12 11 16 16 H 1.07996 * 120.00394 * 9.65974 * 15 13 12 17 17 C 1.38813 * 119.99770 * 189.66242 * 15 13 12 18 18 N 1.31615 * 120.00200 * 27.81197 * 17 15 13 19 19 Si 1.86805 * 120.00029 * 207.81157 * 17 15 13 20 20 H 1.48504 * 109.47148 * 94.99262 * 19 17 15 21 21 H 1.48495 * 109.47364 * 214.99478 * 19 17 15 22 22 H 1.48501 * 109.46904 * 334.99863 * 19 17 15 23 23 C 1.46498 * 119.99768 * 6.09794 * 10 8 7 24 24 C 1.53006 * 109.46916 * 115.23896 * 23 10 8 25 25 C 1.52995 * 109.46975 * 235.23314 * 23 10 8 26 26 C 1.38850 * 120.40276 * 179.97438 * 3 2 1 27 27 C 1.50692 * 120.88047 * 0.02562 * 26 3 2 28 28 H 1.09003 * 109.46899 * 59.99446 * 1 2 3 29 29 H 1.08994 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46588 * 300.00097 * 1 2 3 31 31 H 1.08002 * 119.49673 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.65464 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47047 * 210.00192 * 11 10 8 34 34 H 1.08997 * 109.47571 * 329.99715 * 11 10 8 35 35 H 1.08997 * 109.47429 * 299.99930 * 12 11 10 36 36 H 1.09003 * 109.47443 * 59.99747 * 12 11 10 37 37 H 1.09000 * 109.47490 * 95.16832 * 14 13 12 38 38 H 1.08999 * 109.47526 * 215.17091 * 14 13 12 39 39 H 1.09006 * 109.47360 * 335.17155 * 14 13 12 40 40 H 0.96998 * 120.00407 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.47423 * 355.23555 * 23 10 8 42 42 H 1.08992 * 109.47353 * 59.99616 * 24 23 10 43 43 H 1.09000 * 109.47031 * 180.02562 * 24 23 10 44 44 H 1.09001 * 109.47116 * 299.99149 * 24 23 10 45 45 H 1.08998 * 109.47079 * 60.00466 * 25 23 10 46 46 H 1.09003 * 109.47388 * 179.97438 * 25 23 10 47 47 H 1.08998 * 109.47548 * 300.00037 * 25 23 10 48 48 H 1.08996 * 109.47269 * 85.48370 * 27 26 3 49 49 H 1.09003 * 109.46789 * 205.48156 * 27 26 3 50 50 H 1.09001 * 109.47072 * 325.47835 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2983 2.3808 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0016 7 6 4.0200 2.5635 0.0011 8 6 5.4912 2.7102 0.0011 9 8 6.1619 2.1087 -0.8149 10 7 6.0886 3.5107 0.9059 11 6 7.5296 3.7616 0.8235 12 6 7.7842 4.9903 -0.0519 13 7 9.2252 5.2416 -0.1337 14 6 9.8741 6.1119 0.8498 15 6 9.9655 4.6628 -1.1298 16 1 9.4713 4.1512 -1.9423 17 6 11.3514 4.7336 -1.0950 18 7 11.9765 4.8347 0.0589 19 14 12.3294 4.6855 -2.6858 20 1 12.6232 6.0723 -3.1284 21 1 13.6038 3.9570 -2.4617 22 1 11.5384 3.9892 -3.7322 23 6 5.2970 4.1300 1.9717 24 6 5.7517 3.5849 3.3271 25 6 5.4960 5.6466 1.9392 26 6 3.4322 1.2934 0.0005 27 6 4.2809 0.0482 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 0.2198 2.3226 0.0005 32 1 3.6369 4.6747 0.0016 33 1 7.9252 3.9397 1.8235 34 1 8.0250 2.8948 0.3860 35 1 7.3887 4.8123 -1.0518 36 1 7.2889 5.8571 0.3857 37 1 10.2918 5.5046 1.6528 38 1 10.6729 6.6743 0.3664 39 1 9.1403 6.8045 1.2623 40 1 12.9449 4.8846 0.0832 41 1 4.2424 3.8987 1.8222 42 1 6.8062 3.8162 3.4765 43 1 5.1624 4.0453 4.1201 44 1 5.6098 2.5044 3.3503 45 1 5.1721 6.0350 0.9737 46 1 4.9067 6.1075 2.7319 47 1 6.5506 5.8780 2.0887 48 1 4.4191 -0.2973 -1.0239 49 1 5.2520 0.2705 0.4431 50 1 3.7857 -0.7291 0.5826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507810600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:34 Heat of formation + Delta-G solvation = -2.255760 kcal Electronic energy + Delta-G solvation = -30302.022353 eV Core-core repulsion = 26331.303896 eV Total energy + Delta-G solvation = -3970.718457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.30372 -39.77093 -38.16573 -36.82631 -35.43974 -33.95343 -32.05075 -31.40172 -30.80354 -28.50016 -28.07567 -27.67664 -27.15508 -25.85294 -24.44316 -23.24553 -22.42946 -21.74327 -20.50817 -19.23545 -18.12315 -17.70169 -16.79445 -16.64458 -16.46058 -16.24953 -15.76693 -15.08371 -14.68348 -14.32601 -14.24005 -14.00331 -13.96204 -13.51449 -13.37966 -13.28064 -13.01333 -12.97879 -12.69723 -12.68274 -12.33076 -12.18632 -12.14014 -11.96133 -11.84969 -11.75809 -11.50413 -11.14882 -10.96636 -10.93060 -10.72257 -10.44999 -10.24023 -10.10186 -9.85471 -9.71076 -9.59721 -9.35116 -8.70322 -8.61578 -8.28671 -6.86205 -5.75414 -3.01740 0.54904 0.96554 2.62626 2.85755 3.18378 3.45559 3.49390 3.53230 3.55977 4.11478 4.24987 4.39781 4.51942 4.58799 4.62438 4.72562 4.77581 4.87849 5.00560 5.06094 5.15011 5.18977 5.33353 5.39788 5.50232 5.58354 5.59404 5.60087 5.74639 5.75575 5.79896 5.86212 5.93502 5.99728 6.11683 6.19261 6.20971 6.24520 6.35393 6.60801 6.67643 6.78529 6.82615 7.02836 7.35610 7.58612 7.62005 7.63289 7.91245 8.31452 8.37442 9.24780 9.91249 10.35273 11.32778 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002974 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.013048 B = 9413.320345 C =10228.292418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.030 3.970 5 N -0.453 5.453 6 C 0.097 3.903 7 C -0.135 4.135 8 C 0.558 3.442 9 O -0.517 6.517 10 N -0.593 5.593 11 C 0.091 3.909 12 C 0.139 3.861 13 N -0.598 5.598 14 C 0.159 3.841 15 C -0.254 4.254 16 H 0.076 0.924 17 C 0.001 3.999 18 N -0.899 5.899 19 Si 0.892 3.108 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.121 3.879 24 C -0.163 4.163 25 C -0.166 4.166 26 C -0.027 4.027 27 C -0.108 4.108 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.023 0.977 38 H 0.049 0.951 39 H 0.001 0.999 40 H 0.252 0.748 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 -5.143 6.622 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.127 4.127 5 N -0.163 5.163 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.343 3.657 9 O -0.392 6.392 10 N -0.326 5.326 11 C -0.033 4.033 12 C 0.010 3.990 13 N -0.320 5.320 14 C 0.015 3.985 15 C -0.383 4.383 16 H 0.093 0.907 17 C -0.197 4.197 18 N -0.544 5.544 19 Si 0.722 3.278 20 H -0.216 1.216 21 H -0.221 1.221 22 H -0.204 1.204 23 C 0.017 3.983 24 C -0.221 4.221 25 C -0.224 4.224 26 C -0.036 4.036 27 C -0.165 4.165 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.216 -4.907 6.224 25.480 hybrid contribution 0.834 -0.662 -0.696 1.272 sum -23.382 -5.569 5.529 24.664 Atomic orbital electron populations 1.23138 0.77991 1.04450 1.01574 1.86097 1.21514 1.25615 1.88586 1.19716 0.92197 0.86023 0.99840 1.23005 1.00575 0.87107 1.02006 1.67553 1.11760 1.25894 1.11051 1.22892 0.88395 0.98325 0.96571 1.20901 0.95554 0.93724 1.03900 1.17973 0.86074 0.79675 0.81949 1.90851 1.64700 1.45456 1.38221 1.48215 1.10062 1.46647 1.27668 1.22682 0.76643 1.02287 1.01645 1.21299 0.86083 0.93976 0.97614 1.44121 1.02269 1.53135 1.32509 1.20843 0.94028 0.91648 0.92023 1.19291 0.88400 1.31396 0.99204 0.90651 1.24710 0.96510 1.01920 0.96547 1.70222 1.07714 1.53734 1.22770 0.86395 0.79547 0.77544 0.84303 1.21641 1.22053 1.20381 1.21342 0.95815 0.93668 0.87463 1.22159 1.02700 1.01214 0.96004 1.22311 1.03602 0.94228 1.02264 1.19719 0.90839 0.95599 0.97425 1.20705 0.98779 0.93305 1.03682 0.92345 0.87816 0.92370 0.82247 0.81770 0.91111 0.89555 0.93592 0.93600 0.95870 0.93244 0.98078 0.93823 0.89348 0.91504 0.91590 0.92550 0.91963 0.91609 0.90844 0.89791 0.90573 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.89 9.75 -19.48 -0.19 -3.08 16 3 C 0.07 0.77 6.68 -39.13 -0.26 0.51 16 4 C 0.03 0.31 10.21 -17.30 -0.18 0.13 16 5 N -0.45 -5.38 10.34 -12.80 -0.13 -5.51 16 6 C 0.10 1.19 8.62 -17.14 -0.15 1.04 16 7 C -0.14 -1.87 4.83 -104.84 -0.51 -2.37 16 8 C 0.56 9.23 6.27 -12.33 -0.08 9.15 16 9 O -0.52 -10.63 15.39 5.32 0.08 -10.54 16 10 N -0.59 -9.04 2.40 -167.22 -0.40 -9.44 16 11 C 0.09 1.71 5.06 -4.04 -0.02 1.69 16 12 C 0.14 2.85 5.74 -4.04 -0.02 2.83 16 13 N -0.60 -15.03 2.93 -181.12 -0.53 -15.56 16 14 C 0.16 3.85 9.09 59.84 0.54 4.39 16 15 C -0.25 -7.17 9.67 -15.06 -0.15 -7.32 16 16 H 0.08 2.17 7.95 -52.49 -0.42 1.75 16 17 C 0.00 0.04 4.82 -17.43 -0.08 -0.05 16 18 N -0.90 -26.42 10.92 55.49 0.61 -25.81 16 19 Si 0.89 22.44 29.64 -169.99 -5.04 17.40 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.12 1.41 2.49 -67.93 -0.17 1.24 16 24 C -0.16 -1.75 9.25 37.16 0.34 -1.41 16 25 C -0.17 -1.79 7.86 37.16 0.29 -1.50 16 26 C -0.03 -0.35 5.96 -103.76 -0.62 -0.97 16 27 C -0.11 -1.36 9.04 36.00 0.33 -1.03 16 28 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.16 1.10 6.30 -52.49 -0.33 0.77 16 32 H 0.17 1.82 6.95 -52.49 -0.36 1.46 16 33 H 0.07 1.29 6.69 -51.93 -0.35 0.95 16 34 H 0.09 1.95 7.35 -51.93 -0.38 1.56 16 35 H 0.05 1.01 8.03 -51.93 -0.42 0.60 16 36 H 0.05 0.83 5.13 -51.93 -0.27 0.56 16 37 H 0.02 0.59 7.68 -51.93 -0.40 0.19 16 38 H 0.05 1.30 6.85 -51.93 -0.36 0.94 16 39 H 0.00 0.01 7.83 -51.93 -0.41 -0.39 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.09 0.96 4.63 -51.93 -0.24 0.72 16 42 H 0.07 0.80 6.86 -51.93 -0.36 0.44 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.92 6.36 -51.93 -0.33 0.58 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 1.07 6.64 -51.93 -0.34 0.72 16 50 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -33.32 392.97 -7.21 -40.53 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.80 Total: -1.35 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 0.27 Total: 7.45 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.46 Total: -56.33 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.11 Total: -13.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.04 Total: 17.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.32 -7.21 -40.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507810600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.276 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds