Wall clock time and date at job start Tue Mar 31 2020 19:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35916 * 117.00221 * 2 1 4 4 C 1.38845 * 120.40907 * 0.02562 * 3 2 1 5 5 N 1.31885 * 121.00699 * 179.97438 * 4 3 2 6 6 C 1.31685 * 121.93575 * 359.97438 * 5 4 3 7 7 C 1.39522 * 120.69241 * 0.02562 * 6 5 4 8 8 C 1.47852 * 120.53108 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99822 * 230.79821 * 8 7 6 10 10 N 1.34775 * 120.00155 * 50.79596 * 8 7 6 11 11 C 1.46501 * 119.99928 * 186.09654 * 10 8 7 12 12 C 1.52997 * 109.47054 * 90.00286 * 11 10 8 13 13 N 1.46505 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00287 * 270.00011 * 13 12 11 15 15 C 1.36935 * 119.99664 * 90.00046 * 13 12 11 16 16 H 1.07996 * 120.00394 * 9.65974 * 15 13 12 17 17 C 1.38813 * 119.99770 * 189.66242 * 15 13 12 18 18 N 1.31615 * 120.00200 * 27.81197 * 17 15 13 19 19 Si 1.86805 * 120.00029 * 207.81157 * 17 15 13 20 20 H 1.48504 * 109.47148 * 94.99262 * 19 17 15 21 21 H 1.48495 * 109.47364 * 214.99478 * 19 17 15 22 22 H 1.48501 * 109.46904 * 334.99863 * 19 17 15 23 23 C 1.46498 * 119.99768 * 6.09794 * 10 8 7 24 24 C 1.53006 * 109.46916 * 115.23896 * 23 10 8 25 25 C 1.52995 * 109.46975 * 235.23314 * 23 10 8 26 26 C 1.38850 * 120.40276 * 179.97438 * 3 2 1 27 27 C 1.50692 * 120.88047 * 0.02562 * 26 3 2 28 28 H 1.09003 * 109.46899 * 59.99446 * 1 2 3 29 29 H 1.08994 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46588 * 300.00097 * 1 2 3 31 31 H 1.08002 * 119.49673 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.65464 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47047 * 210.00192 * 11 10 8 34 34 H 1.08997 * 109.47571 * 329.99715 * 11 10 8 35 35 H 1.08997 * 109.47429 * 299.99930 * 12 11 10 36 36 H 1.09003 * 109.47443 * 59.99747 * 12 11 10 37 37 H 1.09000 * 109.47490 * 95.16832 * 14 13 12 38 38 H 1.08999 * 109.47526 * 215.17091 * 14 13 12 39 39 H 1.09006 * 109.47360 * 335.17155 * 14 13 12 40 40 H 0.96998 * 120.00407 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.47423 * 355.23555 * 23 10 8 42 42 H 1.08992 * 109.47353 * 59.99616 * 24 23 10 43 43 H 1.09000 * 109.47031 * 180.02562 * 24 23 10 44 44 H 1.09001 * 109.47116 * 299.99149 * 24 23 10 45 45 H 1.08998 * 109.47079 * 60.00466 * 25 23 10 46 46 H 1.09003 * 109.47388 * 179.97438 * 25 23 10 47 47 H 1.08998 * 109.47548 * 300.00037 * 25 23 10 48 48 H 1.08996 * 109.47269 * 85.48370 * 27 26 3 49 49 H 1.09003 * 109.46789 * 205.48156 * 27 26 3 50 50 H 1.09001 * 109.47072 * 325.47835 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2983 2.3808 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0016 7 6 4.0200 2.5635 0.0011 8 6 5.4912 2.7102 0.0011 9 8 6.1619 2.1087 -0.8149 10 7 6.0886 3.5107 0.9059 11 6 7.5296 3.7616 0.8235 12 6 7.7842 4.9903 -0.0519 13 7 9.2252 5.2416 -0.1337 14 6 9.8741 6.1119 0.8498 15 6 9.9655 4.6628 -1.1298 16 1 9.4713 4.1512 -1.9423 17 6 11.3514 4.7336 -1.0950 18 7 11.9765 4.8347 0.0589 19 14 12.3294 4.6855 -2.6858 20 1 12.6232 6.0723 -3.1284 21 1 13.6038 3.9570 -2.4617 22 1 11.5384 3.9892 -3.7322 23 6 5.2970 4.1300 1.9717 24 6 5.7517 3.5849 3.3271 25 6 5.4960 5.6466 1.9392 26 6 3.4322 1.2934 0.0005 27 6 4.2809 0.0482 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 0.2198 2.3226 0.0005 32 1 3.6369 4.6747 0.0016 33 1 7.9252 3.9397 1.8235 34 1 8.0250 2.8948 0.3860 35 1 7.3887 4.8123 -1.0518 36 1 7.2889 5.8571 0.3857 37 1 10.2918 5.5046 1.6528 38 1 10.6729 6.6743 0.3664 39 1 9.1403 6.8045 1.2623 40 1 12.9449 4.8846 0.0832 41 1 4.2424 3.8987 1.8222 42 1 6.8062 3.8162 3.4765 43 1 5.1624 4.0453 4.1201 44 1 5.6098 2.5044 3.3503 45 1 5.1721 6.0350 0.9737 46 1 4.9067 6.1075 2.7319 47 1 6.5506 5.8780 2.0887 48 1 4.4191 -0.2973 -1.0239 49 1 5.2520 0.2705 0.4431 50 1 3.7857 -0.7291 0.5826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507810600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:32 Heat of formation + Delta-G solvation = -23.472537 kcal Electronic energy + Delta-G solvation = -30302.942381 eV Core-core repulsion = 26331.303896 eV Total energy + Delta-G solvation = -3971.638485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.27756 -40.86836 -39.00578 -38.22171 -37.21371 -34.92816 -33.77558 -32.62783 -32.09671 -29.91472 -28.91662 -28.43219 -28.11719 -27.88742 -25.83006 -24.53390 -23.45876 -22.79031 -22.30852 -20.31353 -19.19945 -18.77500 -18.56117 -17.70992 -17.39624 -17.14364 -16.90854 -16.77046 -16.06058 -15.62966 -15.38191 -15.14506 -15.10292 -14.97553 -14.79326 -14.45552 -14.25195 -13.98388 -13.89815 -13.81014 -13.70867 -13.37622 -13.17862 -13.02705 -12.87437 -12.84259 -12.74813 -12.72896 -12.40190 -12.37549 -12.18659 -12.08352 -11.95836 -11.84503 -11.47929 -11.36107 -10.61803 -10.59423 -10.44317 -9.85698 -9.49893 -8.90681 -7.92627 -5.20749 -0.40048 0.05395 1.43464 1.45392 1.50717 1.54802 1.78309 2.23998 2.51494 2.55381 3.19572 3.22167 3.40085 3.44853 3.57352 3.71513 3.84546 3.91999 4.10190 4.16292 4.16635 4.28806 4.37306 4.42710 4.43906 4.53217 4.58069 4.59596 4.61419 4.70439 4.78301 4.79474 4.82693 4.91471 4.95780 5.00014 5.01115 5.02524 5.11956 5.29000 5.31571 5.35043 5.43117 5.52580 5.61184 5.70869 6.14325 6.24385 6.35531 6.70605 7.03258 7.11165 7.85457 8.23296 9.13661 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002974 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.013048 B = 9413.320345 C =10228.292418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.077 3.923 4 C 0.042 3.958 5 N -0.458 5.458 6 C 0.098 3.902 7 C -0.149 4.149 8 C 0.557 3.443 9 O -0.570 6.570 10 N -0.587 5.587 11 C 0.113 3.887 12 C 0.145 3.855 13 N -0.614 5.614 14 C 0.173 3.827 15 C -0.265 4.265 16 H 0.060 0.940 17 C -0.046 4.046 18 N -0.925 5.925 19 Si 0.953 3.047 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.118 3.882 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.046 4.046 27 C -0.102 4.102 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.198 0.802 32 H 0.175 0.825 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.002 0.998 38 H 0.022 0.978 39 H 0.042 0.958 40 H 0.250 0.750 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.052 0.948 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.851 -4.414 7.466 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.029 3.971 4 C -0.115 4.115 5 N -0.168 5.168 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.345 3.655 9 O -0.449 6.449 10 N -0.319 5.319 11 C -0.012 4.012 12 C 0.018 3.982 13 N -0.337 5.337 14 C 0.028 3.972 15 C -0.395 4.395 16 H 0.078 0.922 17 C -0.242 4.242 18 N -0.571 5.571 19 Si 0.782 3.218 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.016 3.984 24 C -0.218 4.218 25 C -0.222 4.222 26 C -0.055 4.055 27 C -0.158 4.158 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.192 0.808 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.769 -4.163 7.097 28.962 hybrid contribution 1.696 -0.984 -0.924 2.167 sum -26.073 -5.147 6.173 27.284 Atomic orbital electron populations 1.23526 0.75441 1.06347 1.02996 1.86100 1.24086 1.24780 1.88116 1.19674 0.91392 0.87128 0.98862 1.23588 1.02169 0.86114 0.99668 1.67652 1.11143 1.26657 1.11304 1.22967 0.88587 0.98071 0.96388 1.20624 0.93457 0.94939 1.06413 1.18465 0.87370 0.78710 0.80994 1.90817 1.66196 1.47554 1.40327 1.48183 1.08757 1.46556 1.28422 1.22039 0.78827 0.99412 1.00956 1.21358 0.83928 0.95850 0.97099 1.44303 1.03713 1.53309 1.32372 1.20644 0.94328 0.91439 0.90794 1.19395 0.89011 1.31304 0.99793 0.92185 1.25376 0.97279 1.02371 0.99173 1.70326 1.07647 1.54957 1.24175 0.85458 0.77967 0.77555 0.80856 1.20980 1.22027 1.20246 1.21648 0.95945 0.94324 0.86502 1.22152 1.02320 1.01028 0.96273 1.22306 1.03094 0.93205 1.03612 1.19826 0.92176 0.95115 0.98354 1.20604 0.97906 0.94114 1.03203 0.91087 0.85931 0.90630 0.78561 0.80831 0.90430 0.94156 0.95641 0.90222 0.97963 0.95942 0.93915 0.94049 0.87811 0.92894 0.88573 0.93277 0.91812 0.88471 0.92464 0.90677 0.92944 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.19 9.75 -92.60 -0.90 -6.09 16 3 C 0.08 1.54 6.68 22.56 0.15 1.69 16 4 C 0.04 0.71 10.21 84.83 0.87 1.58 16 5 N -0.46 -9.54 10.34 -194.40 -2.01 -11.55 16 6 C 0.10 2.24 8.62 85.02 0.73 2.98 16 7 C -0.15 -4.08 4.83 -20.01 -0.10 -4.18 16 8 C 0.56 19.20 6.27 86.79 0.54 19.75 16 9 O -0.57 -25.17 15.39 -3.89 -0.06 -25.23 16 10 N -0.59 -18.25 2.40 -801.22 -1.92 -20.17 16 11 C 0.11 4.41 5.06 86.38 0.44 4.84 16 12 C 0.14 6.06 5.74 86.38 0.50 6.55 16 13 N -0.61 -31.57 2.93 -726.95 -2.13 -33.70 16 14 C 0.17 8.39 9.09 127.77 1.16 9.55 16 15 C -0.27 -15.48 9.67 84.03 0.81 -14.67 16 16 H 0.06 3.62 7.95 -2.91 -0.02 3.59 16 17 C -0.05 -2.70 4.82 84.86 0.41 -2.29 16 18 N -0.92 -55.68 10.92 21.65 0.24 -55.44 16 19 Si 0.95 47.26 29.64 68.60 2.03 49.30 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 C 0.12 2.57 2.49 44.99 0.11 2.69 16 24 C -0.16 -3.19 9.25 71.98 0.67 -2.53 16 25 C -0.16 -3.11 7.86 71.98 0.57 -2.54 16 26 C -0.05 -1.17 5.96 -19.30 -0.12 -1.28 16 27 C -0.10 -2.64 9.04 71.23 0.64 -2.00 16 28 H 0.07 0.30 7.67 -2.39 -0.02 0.28 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.25 7.67 -2.39 -0.02 0.23 16 31 H 0.20 1.75 6.30 -2.91 -0.02 1.73 16 32 H 0.17 3.52 6.95 -2.91 -0.02 3.50 16 33 H 0.08 2.91 6.69 -2.38 -0.02 2.90 16 34 H 0.04 1.95 7.35 -2.39 -0.02 1.93 16 35 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 36 H 0.08 2.78 5.13 -2.39 -0.01 2.77 16 37 H 0.00 0.11 7.68 -2.39 -0.02 0.09 16 38 H 0.02 1.18 6.85 -2.39 -0.02 1.16 16 39 H 0.04 1.68 7.83 -2.38 -0.02 1.66 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.10 2.03 4.63 -2.39 -0.01 2.02 16 42 H 0.05 1.21 6.86 -2.39 -0.02 1.19 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.20 7.50 -2.39 -0.02 1.18 16 46 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 1.29 6.36 -2.39 -0.02 1.27 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.05 1.58 6.64 -2.39 -0.02 1.57 16 50 H 0.09 1.95 7.76 -2.39 -0.02 1.93 16 Total: -1.00 -75.95 392.97 4.69 -71.26 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.94 Total: 10.32 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 8.50 Total: 21.31 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.83 Total: -120.87 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.96 Total: -31.32 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.30 kcal Total: -75.95 4.69 -71.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507810600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.792 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds