Wall clock time and date at job start Tue Mar 31 2020 19:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35648 * 116.99728 * 2 1 4 4 C 1.39340 * 120.54020 * 0.28030 * 3 2 1 5 5 C 1.38306 * 118.43708 * 180.24084 * 4 3 2 6 6 C 1.50706 * 120.27732 * 179.78446 * 5 4 3 7 7 C 1.38770 * 119.44606 * 359.50181 * 5 4 3 8 8 N 1.31376 * 121.06221 * 0.23478 * 7 5 4 9 9 C 1.32855 * 121.70174 * 0.02562 * 8 7 5 10 10 C 1.47822 * 119.78418 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00050 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00027 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.46937 * 325.00119 * 13 12 10 15 15 C 1.52996 * 109.46814 * 204.99541 * 13 12 10 16 16 N 1.46500 * 109.47447 * 55.00443 * 15 13 12 17 17 C 1.36929 * 120.00411 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00100 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99960 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47201 * 89.99519 * 21 19 17 23 23 H 1.48497 * 109.47292 * 209.99946 * 21 19 17 24 24 H 1.48503 * 109.47141 * 330.00077 * 21 19 17 25 25 C 1.53006 * 109.47011 * 84.99744 * 13 12 10 26 26 C 1.53003 * 109.47069 * 59.99822 * 25 13 12 27 27 C 1.52997 * 109.47026 * 179.97438 * 25 13 12 28 28 C 1.52999 * 109.46997 * 299.99915 * 25 13 12 29 29 H 1.09003 * 109.46708 * 299.99544 * 1 2 3 30 30 H 1.09002 * 109.47222 * 59.99722 * 1 2 3 31 31 H 1.09004 * 109.46588 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.78699 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46953 * 269.71587 * 6 5 4 34 34 H 1.09000 * 109.47318 * 29.71184 * 6 5 4 35 35 H 1.09000 * 109.47161 * 149.71815 * 6 5 4 36 36 H 1.08003 * 119.46296 * 180.25566 * 7 5 4 37 37 H 0.97006 * 119.99627 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46824 * 175.00144 * 15 13 12 39 39 H 1.08999 * 109.47270 * 294.99744 * 15 13 12 40 40 H 0.97001 * 119.99561 * 359.97438 * 16 15 13 41 41 H 0.96997 * 120.00021 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47179 * 59.99800 * 26 25 13 43 43 H 1.08997 * 109.46698 * 179.97438 * 26 25 13 44 44 H 1.08995 * 109.47216 * 300.00009 * 26 25 13 45 45 H 1.09002 * 109.46998 * 60.00114 * 27 25 13 46 46 H 1.08993 * 109.46968 * 179.97438 * 27 25 13 47 47 H 1.08994 * 109.47282 * 300.00382 * 27 25 13 48 48 H 1.08995 * 109.47206 * 60.00041 * 28 25 13 49 49 H 1.09006 * 109.46969 * 180.02562 * 28 25 13 50 50 H 1.09002 * 109.47098 * 299.99929 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3843 0.0059 5 6 1.9696 3.5928 0.0005 6 6 1.2019 4.8897 0.0016 7 6 3.3572 3.6012 0.0000 8 7 4.0419 2.4800 0.0000 9 6 3.4410 1.2950 -0.0001 10 6 4.2532 0.0599 -0.0007 11 8 3.7076 -1.0263 -0.0003 12 7 5.5987 0.1381 -0.0006 13 6 6.4036 -1.0860 -0.0007 14 1 5.8998 -1.8521 0.5886 15 6 7.7761 -0.7939 0.6089 16 7 7.6043 -0.2079 1.9406 17 6 8.7015 0.1380 2.6832 18 1 9.6937 -0.0216 2.2874 19 6 8.5387 0.6938 3.9448 20 7 7.3297 0.8887 4.4269 21 14 10.0355 1.1649 4.9581 22 1 10.4128 2.5699 4.6601 23 1 9.7168 1.0337 6.4025 24 1 11.1671 0.2657 4.6172 25 6 6.5787 -1.5812 -1.4378 26 6 7.2858 -0.5058 -2.2651 27 6 7.4198 -2.8592 -1.4379 28 6 5.2061 -1.8732 -2.0474 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2174 2.3527 0.0101 33 1 1.0165 5.2030 -1.0258 34 1 0.2511 4.7487 0.5156 35 1 1.7829 5.6554 0.5157 36 1 3.8828 4.5448 0.0001 37 1 6.0341 1.0049 -0.0006 38 1 8.3423 -1.7217 0.6906 39 1 8.3156 -0.0941 -0.0292 40 1 6.7133 -0.0648 2.2962 41 1 7.2159 1.2774 5.3083 42 1 8.2637 -0.2976 -1.8308 43 1 7.4110 -0.8587 -3.2887 44 1 6.6870 0.4049 -2.2651 45 1 6.9164 -3.6255 -0.8484 46 1 7.5442 -3.2122 -2.4616 47 1 8.3975 -2.6508 -1.0037 48 1 4.6073 -0.9625 -2.0473 49 1 5.3310 -2.2264 -3.0711 50 1 4.7024 -2.6394 -1.4580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507961656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:13 Heat of formation + Delta-G solvation = -54.541321 kcal Electronic energy + Delta-G solvation = -30484.840251 eV Core-core repulsion = 26511.854522 eV Total energy + Delta-G solvation = -3972.985729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.06039 -40.84313 -39.26725 -38.49656 -36.18599 -34.95496 -34.24662 -32.91034 -31.99893 -29.59012 -28.95628 -28.28100 -28.15096 -27.52837 -25.68592 -24.55998 -23.61904 -22.95000 -21.76520 -19.85410 -19.47885 -18.77510 -18.50411 -18.11840 -17.12997 -16.98178 -16.77089 -16.37745 -16.10637 -15.46519 -15.35922 -15.05246 -14.96299 -14.83509 -14.77751 -14.55742 -14.47601 -14.19290 -13.63942 -13.58899 -13.49201 -13.06783 -13.01361 -12.99585 -12.92726 -12.73834 -12.52511 -12.39795 -12.37369 -12.35034 -12.17502 -12.00986 -11.73840 -11.63334 -11.29927 -11.14711 -10.91080 -10.55744 -10.51523 -9.85890 -9.41872 -8.98122 -7.91874 -5.21888 -0.36173 0.21997 1.47452 1.49938 1.58226 1.81027 2.15323 2.26280 2.57263 2.82984 3.25823 3.41927 3.55535 3.65760 3.71157 3.85377 3.91172 4.04539 4.06630 4.23512 4.24965 4.33623 4.34004 4.35335 4.46634 4.60426 4.65116 4.71464 4.81395 4.83058 4.84698 4.86207 4.91507 4.96468 5.06748 5.08640 5.13958 5.16722 5.17741 5.25007 5.31181 5.46932 5.47253 5.50977 5.56133 5.69272 6.21445 6.27766 6.55189 6.85832 7.32981 7.34350 8.08578 8.32950 9.31585 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.004203 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.732809 B = 6660.012593 C = 8623.578847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.130 3.870 4 C -0.177 4.177 5 C -0.061 4.061 6 C -0.111 4.111 7 C 0.046 3.954 8 N -0.437 5.437 9 C -0.004 4.004 10 C 0.566 3.434 11 O -0.549 6.549 12 N -0.690 5.690 13 C 0.157 3.843 14 H 0.055 0.945 15 C 0.146 3.854 16 N -0.743 5.743 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.976 3.024 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.070 4.070 26 C -0.135 4.135 27 C -0.137 4.137 28 C -0.117 4.117 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.180 0.820 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.187 0.813 37 H 0.408 0.592 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.371 0.629 41 H 0.249 0.751 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.064 0.936 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 5.139 -16.103 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.215 6.215 3 C 0.079 3.921 4 C -0.203 4.203 5 C -0.063 4.063 6 C -0.168 4.168 7 C -0.117 4.117 8 N -0.148 5.148 9 C -0.140 4.140 10 C 0.353 3.647 11 O -0.428 6.428 12 N -0.340 5.340 13 C 0.052 3.948 14 H 0.073 0.927 15 C 0.019 3.981 16 N -0.386 5.386 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.192 1.192 25 C -0.072 4.072 26 C -0.193 4.193 27 C -0.195 4.195 28 C -0.174 4.174 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.197 0.803 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.244 0.756 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.126 4.085 -16.076 21.787 hybrid contribution -0.493 0.630 1.270 1.501 sum -14.619 4.714 -14.807 21.335 Atomic orbital electron populations 1.23518 0.76275 1.05847 1.02844 1.86386 1.23482 1.25202 1.86457 1.20199 0.91899 0.86804 0.93174 1.21975 1.02285 0.90119 1.05949 1.21451 0.94667 0.97329 0.92859 1.20932 1.00093 0.91224 1.04509 1.23201 0.91977 0.96351 1.00125 1.67547 1.40951 0.97939 1.08344 1.20574 0.89608 0.92689 1.11176 1.17888 0.82570 0.87770 0.76498 1.90751 1.72275 1.28502 1.51226 1.45708 1.05197 1.10249 1.72802 1.21159 0.90843 0.86281 0.96497 0.92681 1.21219 0.94089 0.96887 0.85891 1.42553 1.05652 1.74893 1.15479 1.19658 0.88186 1.32372 0.97184 0.90183 1.25591 0.99137 1.02891 0.99148 1.69869 1.22073 1.51738 1.18478 0.85108 0.78985 0.78135 0.77322 1.21234 1.22554 1.19242 1.20869 0.96500 0.96831 0.92994 1.21854 1.00043 0.97493 0.99860 1.21866 0.99381 0.95441 1.02785 1.21739 0.95190 1.00557 0.99963 0.91083 0.90358 0.86877 0.80286 0.88352 0.89414 0.89435 0.79660 0.75619 0.94098 0.94100 0.79736 0.94257 0.92064 0.90916 0.93697 0.93271 0.90427 0.91975 0.94807 0.91680 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.83 113.37 1.11 1.27 16 2 O -0.30 -9.33 8.56 -68.64 -0.59 -9.92 16 3 C 0.13 3.96 6.71 22.93 0.15 4.11 16 4 C -0.18 -3.68 8.80 22.55 0.20 -3.48 16 5 C -0.06 -1.15 5.90 -19.72 -0.12 -1.26 16 6 C -0.11 -1.02 10.03 71.24 0.71 -0.31 16 7 C 0.05 1.14 10.85 84.89 0.92 2.06 16 8 N -0.44 -14.66 9.54 -184.63 -1.76 -16.42 16 9 C 0.00 -0.14 6.76 41.93 0.28 0.14 16 10 C 0.57 23.20 6.15 86.78 0.53 23.73 16 11 O -0.55 -24.37 12.26 17.10 0.21 -24.16 16 12 N -0.69 -27.23 3.63 -445.43 -1.62 -28.85 16 13 C 0.16 6.02 1.69 44.99 0.08 6.10 16 14 H 0.05 2.44 7.58 -2.39 -0.02 2.42 16 15 C 0.15 6.10 5.10 86.38 0.44 6.54 16 16 N -0.74 -39.74 5.43 -343.45 -1.87 -41.61 16 17 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -62.05 13.06 21.65 0.28 -61.76 16 21 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 C -0.07 -2.13 0.62 -52.18 -0.03 -2.16 16 26 C -0.14 -3.63 7.97 71.98 0.57 -3.06 16 27 C -0.14 -3.61 8.12 71.98 0.58 -3.02 16 28 C -0.12 -3.65 7.00 71.98 0.50 -3.14 16 29 H 0.07 0.97 7.69 -2.39 -0.02 0.96 16 30 H 0.08 0.94 7.71 -2.39 -0.02 0.92 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.18 2.24 6.46 -2.91 -0.02 2.22 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.57 8.09 -2.39 -0.02 0.56 16 35 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.41 16.48 7.93 -92.70 -0.73 15.75 16 38 H 0.04 1.68 6.71 -2.39 -0.02 1.67 16 39 H 0.04 1.64 6.17 -2.39 -0.01 1.62 16 40 H 0.37 21.90 7.33 -92.71 -0.68 21.22 16 41 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.28 7.60 -2.39 -0.02 1.27 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.06 1.64 6.54 -2.39 -0.02 1.62 16 48 H 0.03 1.17 5.77 -2.39 -0.01 1.15 16 49 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 50 H 0.04 1.48 7.53 -2.39 -0.02 1.46 16 Total: -1.00 -78.74 394.95 3.49 -75.25 By element: Atomic # 1 Polarization: 48.15 SS G_CDS: -0.45 Total: 47.70 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.26 Total: 10.45 kcal Atomic # 7 Polarization: -143.68 SS G_CDS: -4.96 Total: -148.64 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.38 Total: -34.08 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -78.74 3.49 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507961656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.708 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds