Wall clock time and date at job start Tue Mar 31 2020 19:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38608 * 120.32240 * 2 1 4 4 N 1.31499 * 120.90033 * 179.74628 * 3 2 1 5 5 C 1.32747 * 121.64042 * 0.56698 * 4 3 2 6 6 C 1.48169 * 119.71857 * 179.71196 * 5 4 3 7 7 O 1.21510 * 119.99555 * 186.66303 * 6 5 4 8 8 N 1.34778 * 120.00170 * 6.66253 * 6 5 4 9 9 C 1.46501 * 119.99888 * 5.31220 * 8 6 5 10 10 C 1.46496 * 119.99616 * 185.03176 * 8 6 5 11 11 C 1.52997 * 109.47334 * 270.27538 * 10 8 6 12 12 O 1.42896 * 109.47136 * 65.00169 * 11 10 8 13 13 C 1.42906 * 114.00152 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47187 * 180.02562 * 13 12 11 15 15 N 1.46495 * 109.47243 * 64.99702 * 14 13 12 16 16 C 1.46497 * 120.00224 * 270.00120 * 15 14 13 17 17 C 1.36936 * 119.99798 * 89.99838 * 15 14 13 18 18 H 1.08006 * 119.99691 * 23.96382 * 17 15 14 19 19 C 1.38811 * 120.00183 * 203.95538 * 17 15 14 20 20 N 1.31622 * 119.99901 * 14.33450 * 19 17 15 21 21 Si 1.86806 * 120.00172 * 194.32930 * 19 17 15 22 22 H 1.48501 * 109.47019 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46975 * 120.00592 * 21 19 17 24 24 H 1.48494 * 109.46939 * 240.00300 * 21 19 17 25 25 C 1.39266 * 120.55485 * 359.43493 * 5 4 3 26 26 C 1.38581 * 120.32803 * 180.02562 * 2 1 3 27 27 C 1.50693 * 120.75521 * 359.95000 * 26 2 1 28 28 H 1.08997 * 109.47031 * 269.97198 * 1 2 3 29 29 H 1.08996 * 109.47442 * 29.97564 * 1 2 3 30 30 H 1.09003 * 109.47052 * 149.97656 * 1 2 3 31 31 H 1.07999 * 119.54731 * 0.04760 * 3 2 1 32 32 H 1.09004 * 109.46456 * 275.29771 * 9 8 6 33 33 H 1.08995 * 109.47339 * 35.29771 * 9 8 6 34 34 H 1.08996 * 109.47033 * 155.30427 * 9 8 6 35 35 H 1.08995 * 109.47765 * 30.27892 * 10 8 6 36 36 H 1.09004 * 109.47032 * 150.28059 * 10 8 6 37 37 H 1.08998 * 109.47418 * 185.00779 * 11 10 8 38 38 H 1.09009 * 109.47184 * 305.00271 * 11 10 8 39 39 H 1.09000 * 109.47013 * 300.00032 * 13 12 11 40 40 H 1.08998 * 109.47215 * 60.00108 * 13 12 11 41 41 H 1.09003 * 109.46689 * 185.00025 * 14 13 12 42 42 H 1.08999 * 109.46777 * 304.99556 * 14 13 12 43 43 H 1.09001 * 109.47092 * 94.47325 * 16 15 14 44 44 H 1.09000 * 109.46843 * 214.46757 * 16 15 14 45 45 H 1.08998 * 109.47040 * 334.47066 * 16 15 14 46 46 H 0.96996 * 120.00029 * 179.97438 * 20 19 17 47 47 H 1.07998 * 120.46976 * 180.29319 * 25 5 4 48 48 H 1.09005 * 109.47598 * 270.02846 * 27 26 2 49 49 H 1.09000 * 109.47091 * 30.02508 * 27 26 2 50 50 H 1.08997 * 109.47462 * 150.02383 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0050 5 6 4.2294 0.0867 -0.0010 6 6 5.7097 0.1514 -0.0014 7 8 6.3622 -0.8658 -0.1290 8 7 6.3325 1.3383 0.1396 9 6 5.5512 2.5479 0.4096 10 6 7.7911 1.4178 0.0289 11 6 8.4194 1.2070 1.4079 12 8 8.1463 -0.1215 1.8578 13 6 8.6916 -0.4234 3.1437 14 6 8.3399 -1.8637 3.5215 15 7 8.9994 -2.7866 2.5945 16 6 8.3182 -3.2020 1.3659 17 6 10.2526 -3.2611 2.8765 18 1 10.6010 -3.2921 3.8984 19 6 11.0751 -3.7024 1.8491 20 7 10.7807 -3.4120 0.5995 21 14 12.5999 -4.7083 2.2399 22 1 12.7055 -4.8967 3.7091 23 1 12.5019 -6.0336 1.5770 24 1 13.8041 -3.9948 1.7440 25 6 3.5923 -1.1517 -0.0010 26 6 2.2067 -1.1962 -0.0005 27 6 1.4781 -2.5152 0.0000 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6646 2.1305 0.0008 32 1 5.1880 2.9630 -0.5306 33 1 4.7039 2.2982 1.0480 34 1 6.1807 3.2823 0.9119 35 1 8.1463 0.6461 -0.6540 36 1 8.0736 2.3989 -0.3529 37 1 9.4975 1.3541 1.3423 38 1 7.9973 1.9233 2.1129 39 1 9.7753 -0.3101 3.1145 40 1 8.2748 0.2590 3.8845 41 1 8.6785 -2.0657 4.5378 42 1 7.2601 -2.0009 3.4643 43 1 8.6254 -2.5554 0.5438 44 1 8.5828 -4.2338 1.1348 45 1 7.2398 -3.1257 1.5048 46 1 11.3556 -3.7200 -0.1184 47 1 4.1695 -2.0645 -0.0011 48 1 1.3027 -2.8331 1.0278 49 1 0.5232 -2.4030 -0.5135 50 1 2.0811 -3.2637 -0.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566061188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:41 Heat of formation + Delta-G solvation = -24.776285 kcal Electronic energy + Delta-G solvation = -30116.241740 eV Core-core repulsion = 26144.546721 eV Total energy + Delta-G solvation = -3971.695020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.80226 -40.20905 -38.83717 -37.23313 -36.47774 -35.47437 -33.48417 -33.33745 -31.40528 -29.70579 -29.32844 -28.03057 -27.78415 -27.31349 -24.93309 -24.49330 -23.71380 -22.69602 -22.15933 -20.43248 -18.75858 -18.40531 -17.89865 -17.28280 -17.22023 -16.79795 -16.66957 -16.27332 -16.11692 -15.66205 -15.60993 -15.28080 -15.03232 -14.96365 -14.35952 -14.11936 -14.00925 -13.80578 -13.72112 -13.68989 -13.54201 -13.45935 -13.12095 -13.04622 -12.85628 -12.68464 -12.60235 -12.47353 -12.44722 -12.40324 -12.25400 -12.00255 -11.76877 -11.68682 -11.16341 -10.62474 -10.47237 -10.32574 -10.18383 -9.89090 -9.52613 -8.71771 -7.75858 -5.27254 -0.31991 0.22728 1.44131 1.45979 1.57078 1.83409 2.02306 2.52349 2.84386 2.98396 3.17421 3.34325 3.66708 3.74623 3.77333 3.90622 3.95165 4.13055 4.18777 4.26565 4.36307 4.39666 4.49452 4.55727 4.56300 4.57390 4.65888 4.67521 4.70336 4.78029 4.88037 4.90807 4.92071 4.96587 4.98533 5.04330 5.12645 5.13766 5.15032 5.28398 5.31250 5.40786 5.65675 5.65848 5.76487 5.91466 6.35548 6.41017 6.59447 6.77172 7.17709 7.29101 7.90677 8.40807 9.26635 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.003076 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.133220 B = 9101.182535 C =10167.277638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.112 4.112 3 C 0.090 3.910 4 N -0.458 5.458 5 C 0.057 3.943 6 C 0.550 3.450 7 O -0.545 6.545 8 N -0.599 5.599 9 C 0.096 3.904 10 C 0.124 3.876 11 C 0.042 3.958 12 O -0.378 6.378 13 C 0.052 3.948 14 C 0.151 3.849 15 N -0.609 5.609 16 C 0.214 3.786 17 C -0.266 4.266 18 H 0.074 0.926 19 C -0.057 4.057 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.128 4.128 26 C -0.058 4.058 27 C -0.118 4.118 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.198 0.802 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.131 0.869 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.003 0.997 44 H -0.001 1.001 45 H 0.004 0.996 46 H 0.244 0.756 47 H 0.121 0.879 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.210 15.120 -0.513 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.070 4.070 4 N -0.170 5.170 5 C -0.079 4.079 6 C 0.337 3.663 7 O -0.421 6.421 8 N -0.331 5.331 9 C -0.046 4.046 10 C 0.002 3.998 11 C -0.036 4.036 12 O -0.297 6.297 13 C -0.028 4.028 14 C 0.024 3.976 15 N -0.333 5.333 16 C 0.069 3.931 17 C -0.396 4.396 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.150 4.150 26 C -0.066 4.066 27 C -0.174 4.174 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.215 0.785 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.023 0.977 46 H 0.053 0.947 47 H 0.139 0.861 48 H 0.106 0.894 49 H 0.120 0.880 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.396 15.180 -0.815 27.901 hybrid contribution 1.303 -1.309 -0.080 1.849 sum -22.094 13.871 -0.895 26.102 Atomic orbital electron populations 1.20927 0.86965 1.04902 1.04047 1.21431 0.99684 0.92619 0.97657 1.23475 0.88968 0.99359 0.95165 1.68045 1.09316 1.28349 1.11269 1.20910 0.93319 0.90641 1.03010 1.18431 0.86841 0.83730 0.77340 1.90922 1.66600 1.35043 1.49573 1.47691 1.06872 1.08539 1.70017 1.22156 0.95676 0.84583 1.02149 1.21548 0.79240 1.03391 0.95668 1.22981 0.98750 0.85248 0.96595 1.88168 1.76231 1.30239 1.35097 1.23176 0.96203 0.98628 0.84766 1.21017 0.95704 0.87352 0.93489 1.44083 1.15774 1.50837 1.22560 1.20071 0.89874 0.95181 0.87951 1.19599 0.91668 1.35867 0.92440 0.90847 1.25922 1.01098 1.02829 0.95386 1.70362 1.39799 1.48601 0.99176 0.85147 0.79038 0.77837 0.78055 1.18645 1.21979 1.21893 1.22023 0.95739 0.98268 0.98936 1.20516 0.91971 0.97974 0.96091 1.20963 1.00964 0.91545 1.03954 0.89227 0.88988 0.89852 0.78482 0.91611 0.89688 0.90436 0.92915 0.85136 0.93539 0.91927 0.96047 0.92629 0.90932 0.93830 0.97858 0.98224 0.97746 0.94690 0.86091 0.89422 0.88008 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.65 71.23 0.69 -0.02 16 2 C -0.11 -1.69 5.91 -19.70 -0.12 -1.80 16 3 C 0.09 1.46 10.86 84.83 0.92 2.38 16 4 N -0.46 -10.79 6.18 -184.90 -1.14 -11.94 16 5 C 0.06 1.77 6.56 41.89 0.27 2.04 16 6 C 0.55 20.82 7.33 86.88 0.64 21.45 16 7 O -0.55 -26.43 14.90 9.14 0.14 -26.29 16 8 N -0.60 -18.57 2.86 -849.85 -2.43 -21.00 16 9 C 0.10 2.03 9.12 127.77 1.16 3.20 16 10 C 0.12 3.93 5.82 86.38 0.50 4.43 16 11 C 0.04 1.46 6.28 71.98 0.45 1.91 16 12 O -0.38 -17.26 8.45 -136.09 -1.15 -18.41 16 13 C 0.05 2.22 6.28 71.98 0.45 2.67 16 14 C 0.15 7.06 6.11 86.38 0.53 7.59 16 15 N -0.61 -35.02 2.88 -726.95 -2.09 -37.12 16 16 C 0.21 12.96 8.63 127.77 1.10 14.06 16 17 C -0.27 -15.90 9.64 84.03 0.81 -15.09 16 18 H 0.07 4.17 7.86 -2.91 -0.02 4.15 16 19 C -0.06 -3.48 5.07 84.86 0.43 -3.05 16 20 N -0.93 -61.04 10.85 21.65 0.23 -60.81 16 21 Si 0.97 48.22 29.58 68.60 2.03 50.25 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 C -0.13 -3.78 9.34 22.61 0.21 -3.57 16 26 C -0.06 -1.18 5.91 -19.69 -0.12 -1.30 16 27 C -0.12 -1.70 9.67 71.23 0.69 -1.01 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 30 H 0.08 0.41 6.06 -2.39 -0.01 0.40 16 31 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.07 1.25 8.00 -2.39 -0.02 1.24 16 33 H 0.08 1.89 5.77 -2.39 -0.01 1.87 16 34 H 0.08 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.05 2.12 7.50 -2.39 -0.02 2.10 16 36 H 0.13 2.84 8.07 -2.38 -0.02 2.82 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.07 3.07 8.04 -2.39 -0.02 3.06 16 42 H 0.04 1.99 7.86 -2.39 -0.02 1.97 16 43 H 0.00 0.21 7.35 -2.39 -0.02 0.19 16 44 H 0.00 -0.06 7.40 -2.39 -0.02 -0.08 16 45 H 0.00 0.23 7.84 -2.39 -0.02 0.21 16 46 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.12 4.12 7.66 -2.91 -0.02 4.10 16 48 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.10 0.89 6.07 -2.39 -0.01 0.87 16 50 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -86.07 404.14 5.13 -80.94 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.92 Total: 10.47 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 8.63 Total: 33.91 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -5.43 Total: -130.86 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.01 Total: -44.70 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -86.07 5.13 -80.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566061188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds