Wall clock time and date at job start Tue Mar 31 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 110.94541 * 2 1 4 4 O 1.21285 * 120.00290 * 123.98531 * 3 2 1 5 5 N 1.34780 * 119.99806 * 303.98556 * 3 2 1 6 6 C 1.46502 * 119.99610 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.50672 * 35.07499 * 6 5 3 8 8 C 1.53127 * 109.50059 * 274.99698 * 6 5 3 9 9 C 1.53121 * 109.15853 * 182.40868 * 8 6 5 10 10 C 1.53038 * 109.27773 * 57.65358 * 9 8 6 11 11 N 1.46847 * 109.52580 * 300.82387 * 10 9 8 12 12 C 1.46900 * 111.00086 * 185.84136 * 11 10 9 13 13 C 1.50700 * 109.46764 * 293.95026 * 12 11 10 14 14 O 1.21290 * 120.00399 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00298 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99704 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00045 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99499 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47405 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46699 * 120.00452 * 20 18 16 23 23 H 1.48500 * 109.47042 * 240.00191 * 20 18 16 24 24 C 1.46840 * 111.20095 * 61.73891 * 11 10 9 25 25 C 1.54638 * 111.03444 * 123.98490 * 2 1 3 26 26 C 1.51106 * 104.82455 * 142.61073 * 25 2 1 27 27 C 1.30724 * 110.98690 * 343.70723 * 26 25 2 28 28 C 1.51100 * 111.14096 * 359.84700 * 27 26 25 29 29 H 1.09000 * 109.47840 * 296.01345 * 1 2 3 30 30 H 1.09004 * 109.47111 * 56.01450 * 1 2 3 31 31 H 1.08999 * 109.47115 * 176.01151 * 1 2 3 32 32 H 0.97000 * 119.99951 * 0.02562 * 5 3 2 33 33 H 1.08993 * 109.52439 * 302.31240 * 8 6 5 34 34 H 1.09003 * 109.52002 * 62.50736 * 8 6 5 35 35 H 1.08997 * 109.50666 * 177.59790 * 9 8 6 36 36 H 1.09003 * 109.50375 * 297.67729 * 9 8 6 37 37 H 1.09000 * 109.46181 * 60.83873 * 10 9 8 38 38 H 1.09001 * 109.46079 * 180.81472 * 10 9 8 39 39 H 1.09003 * 109.46984 * 53.95013 * 12 11 10 40 40 H 1.08999 * 109.47685 * 173.95258 * 12 11 10 41 41 H 0.97008 * 119.99806 * 0.02562 * 15 13 12 42 42 H 0.97003 * 119.99784 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46375 * 178.23843 * 24 11 10 44 44 H 1.09005 * 109.45952 * 58.27193 * 24 11 10 45 45 H 1.09002 * 110.38811 * 261.48003 * 25 2 1 46 46 H 1.09000 * 110.38511 * 23.74586 * 25 2 1 47 47 H 1.07999 * 124.45081 * 163.60342 * 26 25 2 48 48 H 1.08004 * 124.41170 * 179.90922 * 27 26 25 49 49 H 1.09005 * 110.37876 * 257.72059 * 28 27 26 50 50 H 1.09001 * 110.48663 * 135.39429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.8338 1.7639 0.8709 5 7 1.7002 2.2700 -0.9679 6 6 2.2244 3.6380 -0.9681 7 1 3.2507 3.6346 -0.6013 8 6 1.3598 4.5169 -0.0599 9 6 1.8778 5.9568 -0.1130 10 6 1.8553 6.4489 -1.5619 11 7 2.6973 5.5759 -2.3898 12 6 2.8107 6.0976 -3.7584 13 6 1.4635 6.0393 -4.4313 14 8 0.5034 5.6063 -3.8298 15 7 1.3254 6.4693 -5.7011 16 6 0.0997 6.4168 -6.3131 17 1 -0.7550 6.0306 -5.7779 18 6 -0.0425 6.8597 -7.6225 19 7 0.9978 7.3283 -8.2743 20 14 -1.7125 6.7875 -8.4566 21 1 -2.7121 6.2225 -7.5150 22 1 -2.1266 8.1570 -8.8545 23 1 -1.6262 5.9262 -9.6633 24 6 2.1918 4.1973 -2.3923 25 6 2.0850 -0.8068 1.1968 26 6 3.3070 -1.5111 0.6548 27 6 3.3074 -1.5090 -0.6525 28 6 2.0851 -0.8068 -1.1966 29 1 -0.3635 0.4507 0.9235 30 1 -0.3633 0.5745 -0.8521 31 1 -0.3633 -1.0252 -0.0715 32 1 1.0880 1.9850 -1.6642 33 1 0.3257 4.4890 -0.4032 34 1 1.4148 4.1474 0.9641 35 1 1.2403 6.5957 0.4982 36 1 2.8987 5.9906 0.2676 37 1 0.8319 6.4280 -1.9367 38 1 2.2372 7.4689 -1.6050 39 1 3.1563 7.1309 -3.7259 40 1 3.5235 5.4936 -4.3197 41 1 2.0932 6.8160 -6.1821 42 1 0.8984 7.6378 -9.1883 43 1 2.8178 3.5821 -3.0386 44 1 1.1668 4.1871 -2.7631 45 1 2.3626 -0.1367 2.0105 46 1 1.3484 -1.5337 1.5390 47 1 4.0780 -1.9554 1.2669 48 1 4.0800 -1.9521 -1.2634 49 1 1.3493 -1.5352 -1.5376 50 1 2.3609 -0.1369 -2.0110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567766383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:01 Heat of formation + Delta-G solvation = -56.787905 kcal Electronic energy + Delta-G solvation = -29872.108499 eV Core-core repulsion = 25899.025351 eV Total energy + Delta-G solvation = -3973.083148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.75478 -39.48891 -37.97942 -36.99716 -34.69663 -33.92747 -32.61211 -31.87070 -31.34676 -29.35530 -28.32577 -27.32956 -25.80828 -24.72535 -23.56996 -22.74629 -21.65599 -19.98169 -19.48497 -19.09650 -18.98579 -17.90731 -17.15873 -16.23118 -16.05883 -15.83253 -15.31515 -14.82698 -14.76971 -14.63546 -14.21675 -14.10359 -13.96013 -13.44329 -13.41829 -13.22413 -13.01943 -12.89956 -12.73362 -12.44230 -12.34493 -12.24945 -11.90431 -11.59927 -11.50956 -11.37801 -11.30072 -11.19310 -10.91321 -10.86423 -10.59725 -10.53587 -10.42105 -10.32620 -10.25331 -9.69549 -9.54293 -9.26577 -9.09292 -8.91245 -8.06502 -7.45405 -6.51631 -3.93195 2.08621 2.64711 3.07874 3.11216 3.19998 3.26220 3.75862 4.09000 4.18496 4.34494 4.38769 4.56669 4.81615 4.93086 5.02951 5.06529 5.13314 5.15980 5.18601 5.25770 5.35453 5.41148 5.44775 5.50419 5.54608 5.64953 5.74865 5.76315 5.78849 5.82051 5.86684 5.92302 5.94064 6.00316 6.12096 6.13127 6.20903 6.30960 6.33858 6.37777 6.51969 6.58369 6.69033 6.71744 7.31647 7.42437 7.45111 7.56799 7.94792 8.26403 8.49090 9.06569 9.42755 9.92778 10.64830 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.913751 B =10447.688720 C =11441.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C 0.532 3.468 4 O -0.538 6.538 5 N -0.720 5.720 6 C 0.152 3.848 7 H 0.088 0.912 8 C -0.126 4.126 9 C -0.109 4.109 10 C 0.040 3.960 11 N -0.509 5.509 12 C 0.042 3.958 13 C 0.406 3.594 14 O -0.595 6.595 15 N -0.555 5.555 16 C -0.302 4.302 17 H 0.103 0.897 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.028 3.972 25 C -0.084 4.084 26 C -0.155 4.155 27 C -0.175 4.175 28 C -0.087 4.087 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.086 0.914 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -12.779 13.898 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C 0.317 3.683 4 O -0.415 6.415 5 N -0.370 5.370 6 C 0.047 3.953 7 H 0.106 0.894 8 C -0.164 4.164 9 C -0.147 4.147 10 C -0.088 4.088 11 N -0.232 5.232 12 C -0.090 4.090 13 C 0.191 3.809 14 O -0.482 6.482 15 N -0.190 5.190 16 C -0.432 4.432 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.173 4.173 27 C -0.193 4.193 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.227 0.773 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.105 0.895 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.171 -12.712 14.923 19.858 hybrid contribution -1.282 0.139 -1.696 2.130 sum 1.889 -12.572 13.227 18.346 Atomic orbital electron populations 1.21791 0.91737 1.02932 1.02886 1.21640 0.96984 0.92551 0.98124 1.20160 0.80552 0.86319 0.81244 1.90666 1.35391 1.78437 1.36966 1.46013 1.49118 1.12508 1.29393 1.20925 0.98450 0.79677 0.96202 0.89378 1.21905 0.99672 0.95327 0.99539 1.21485 1.01345 0.95407 0.96496 1.22271 0.98433 0.95679 0.92429 1.62324 1.49774 1.01827 1.09318 1.22048 0.95904 1.01772 0.89259 1.21097 0.91120 0.85102 0.83542 1.90375 1.41249 1.52110 1.64505 1.42078 1.11476 1.54125 1.11324 1.19750 0.88108 1.39601 0.95767 0.87913 1.25300 0.99166 0.96669 0.96680 1.69616 1.29852 1.41878 1.12414 0.85813 0.81586 0.77967 0.79055 1.19240 1.20661 1.20660 1.22562 1.03197 0.89653 0.94593 1.21350 0.95476 0.97785 0.97517 1.23285 0.98204 0.99618 0.96163 1.23253 0.98445 1.01326 0.96286 1.21443 0.96181 0.98178 0.96646 0.91772 0.91689 0.91252 0.76606 0.91807 0.92043 0.91670 0.91593 0.91289 0.91571 0.89156 0.89272 0.77344 0.91754 0.91631 0.89137 0.89400 0.90123 0.85771 0.85750 0.89534 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.42 37.16 0.31 -0.77 16 2 C -0.09 -0.89 0.84 -153.94 -0.13 -1.02 16 3 C 0.53 6.98 6.48 -10.98 -0.07 6.90 16 4 O -0.54 -8.95 15.20 5.55 0.08 -8.86 16 5 N -0.72 -9.04 4.91 -53.72 -0.26 -9.30 16 6 C 0.15 2.19 2.62 -67.84 -0.18 2.02 16 7 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 8 C -0.13 -1.78 5.58 -26.60 -0.15 -1.93 16 9 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 10 C 0.04 0.63 5.09 -3.83 -0.02 0.61 16 11 N -0.51 -8.30 4.86 -236.12 -1.15 -9.45 16 12 C 0.04 0.72 5.86 -4.98 -0.03 0.69 16 13 C 0.41 8.87 7.20 -10.98 -0.08 8.79 16 14 O -0.59 -14.37 11.20 5.55 0.06 -14.31 16 15 N -0.56 -13.39 5.29 -10.96 -0.06 -13.45 16 16 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 17 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 18 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 19 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 20 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.03 0.45 4.44 -3.84 -0.02 0.43 16 25 C -0.08 -0.82 5.72 -26.82 -0.15 -0.98 16 26 C -0.15 -1.50 10.79 -35.75 -0.39 -1.88 16 27 C -0.18 -1.66 10.78 -35.75 -0.39 -2.04 16 28 C -0.09 -0.79 5.92 -26.83 -0.16 -0.95 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 31 H 0.07 0.44 8.05 -51.93 -0.42 0.03 16 32 H 0.40 4.41 7.83 -40.82 -0.32 4.09 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.32 6.00 -51.93 -0.31 1.00 16 38 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 39 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 44 H 0.09 1.70 5.36 -51.93 -0.28 1.42 16 45 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 46 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 47 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 49 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16 50 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -30.48 391.73 -9.73 -40.21 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -8.17 Total: 16.38 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.85 Total: 0.53 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.74 Total: -55.22 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.15 Total: -23.17 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.48 -9.73 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567766383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.580 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds