Wall clock time and date at job start Tue Mar 31 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 110.94541 * 2 1 4 4 O 1.21285 * 120.00290 * 123.98531 * 3 2 1 5 5 N 1.34780 * 119.99806 * 303.98556 * 3 2 1 6 6 C 1.46502 * 119.99610 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.50672 * 35.07499 * 6 5 3 8 8 C 1.53127 * 109.50059 * 274.99698 * 6 5 3 9 9 C 1.53121 * 109.15853 * 182.40868 * 8 6 5 10 10 C 1.53038 * 109.27773 * 57.65358 * 9 8 6 11 11 N 1.46847 * 109.52580 * 300.82387 * 10 9 8 12 12 C 1.46900 * 111.00086 * 185.84136 * 11 10 9 13 13 C 1.50700 * 109.46764 * 293.95026 * 12 11 10 14 14 O 1.21290 * 120.00399 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00298 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99704 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00045 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99499 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47405 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46699 * 120.00452 * 20 18 16 23 23 H 1.48500 * 109.47042 * 240.00191 * 20 18 16 24 24 C 1.46840 * 111.20095 * 61.73891 * 11 10 9 25 25 C 1.54638 * 111.03444 * 123.98490 * 2 1 3 26 26 C 1.51106 * 104.82455 * 142.61073 * 25 2 1 27 27 C 1.30724 * 110.98690 * 343.70723 * 26 25 2 28 28 C 1.51100 * 111.14096 * 359.84700 * 27 26 25 29 29 H 1.09000 * 109.47840 * 296.01345 * 1 2 3 30 30 H 1.09004 * 109.47111 * 56.01450 * 1 2 3 31 31 H 1.08999 * 109.47115 * 176.01151 * 1 2 3 32 32 H 0.97000 * 119.99951 * 0.02562 * 5 3 2 33 33 H 1.08993 * 109.52439 * 302.31240 * 8 6 5 34 34 H 1.09003 * 109.52002 * 62.50736 * 8 6 5 35 35 H 1.08997 * 109.50666 * 177.59790 * 9 8 6 36 36 H 1.09003 * 109.50375 * 297.67729 * 9 8 6 37 37 H 1.09000 * 109.46181 * 60.83873 * 10 9 8 38 38 H 1.09001 * 109.46079 * 180.81472 * 10 9 8 39 39 H 1.09003 * 109.46984 * 53.95013 * 12 11 10 40 40 H 1.08999 * 109.47685 * 173.95258 * 12 11 10 41 41 H 0.97008 * 119.99806 * 0.02562 * 15 13 12 42 42 H 0.97003 * 119.99784 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46375 * 178.23843 * 24 11 10 44 44 H 1.09005 * 109.45952 * 58.27193 * 24 11 10 45 45 H 1.09002 * 110.38811 * 261.48003 * 25 2 1 46 46 H 1.09000 * 110.38511 * 23.74586 * 25 2 1 47 47 H 1.07999 * 124.45081 * 163.60342 * 26 25 2 48 48 H 1.08004 * 124.41170 * 179.90922 * 27 26 25 49 49 H 1.09005 * 110.37876 * 257.72059 * 28 27 26 50 50 H 1.09001 * 110.48663 * 135.39429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.8338 1.7639 0.8709 5 7 1.7002 2.2700 -0.9679 6 6 2.2244 3.6380 -0.9681 7 1 3.2507 3.6346 -0.6013 8 6 1.3598 4.5169 -0.0599 9 6 1.8778 5.9568 -0.1130 10 6 1.8553 6.4489 -1.5619 11 7 2.6973 5.5759 -2.3898 12 6 2.8107 6.0976 -3.7584 13 6 1.4635 6.0393 -4.4313 14 8 0.5034 5.6063 -3.8298 15 7 1.3254 6.4693 -5.7011 16 6 0.0997 6.4168 -6.3131 17 1 -0.7550 6.0306 -5.7779 18 6 -0.0425 6.8597 -7.6225 19 7 0.9978 7.3283 -8.2743 20 14 -1.7125 6.7875 -8.4566 21 1 -2.7121 6.2225 -7.5150 22 1 -2.1266 8.1570 -8.8545 23 1 -1.6262 5.9262 -9.6633 24 6 2.1918 4.1973 -2.3923 25 6 2.0850 -0.8068 1.1968 26 6 3.3070 -1.5111 0.6548 27 6 3.3074 -1.5090 -0.6525 28 6 2.0851 -0.8068 -1.1966 29 1 -0.3635 0.4507 0.9235 30 1 -0.3633 0.5745 -0.8521 31 1 -0.3633 -1.0252 -0.0715 32 1 1.0880 1.9850 -1.6642 33 1 0.3257 4.4890 -0.4032 34 1 1.4148 4.1474 0.9641 35 1 1.2403 6.5957 0.4982 36 1 2.8987 5.9906 0.2676 37 1 0.8319 6.4280 -1.9367 38 1 2.2372 7.4689 -1.6050 39 1 3.1563 7.1309 -3.7259 40 1 3.5235 5.4936 -4.3197 41 1 2.0932 6.8160 -6.1821 42 1 0.8984 7.6378 -9.1883 43 1 2.8178 3.5821 -3.0386 44 1 1.1668 4.1871 -2.7631 45 1 2.3626 -0.1367 2.0105 46 1 1.3484 -1.5337 1.5390 47 1 4.0780 -1.9554 1.2669 48 1 4.0800 -1.9521 -1.2634 49 1 1.3493 -1.5352 -1.5376 50 1 2.3609 -0.1369 -2.0110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567766383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:00 Heat of formation + Delta-G solvation = -77.431645 kcal Electronic energy + Delta-G solvation = -29873.003679 eV Core-core repulsion = 25899.025351 eV Total energy + Delta-G solvation = -3973.978328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.76335 -40.93316 -39.24188 -38.23769 -36.17026 -35.55758 -33.83714 -33.26447 -32.73139 -30.51424 -29.10465 -28.84111 -26.52512 -26.50192 -24.66800 -24.10098 -22.78025 -21.25945 -21.03086 -20.24130 -19.81571 -19.73900 -18.10482 -17.73861 -17.39486 -16.80884 -16.59697 -16.32605 -16.14023 -15.82711 -15.70418 -15.51755 -15.40264 -14.93226 -14.56010 -14.31673 -14.00723 -13.80226 -13.71290 -13.56190 -13.46619 -13.28972 -13.15348 -13.05836 -13.00925 -12.55448 -12.42209 -12.24673 -12.22025 -12.12737 -12.08925 -11.86628 -11.79609 -11.64779 -11.50336 -11.35229 -10.95004 -10.76401 -10.09425 -9.99356 -9.78262 -9.02100 -8.46589 -5.96205 1.34373 1.36449 1.40939 1.54032 1.61525 2.00491 2.06228 2.28157 3.05804 3.19773 3.24973 3.42836 3.59445 3.70483 3.82682 3.91091 4.03555 4.10074 4.16365 4.33664 4.40315 4.45564 4.46963 4.52599 4.53315 4.65934 4.67550 4.73028 4.75848 4.81922 4.91249 4.92351 4.95344 4.98754 5.03160 5.04317 5.13288 5.14723 5.18499 5.26227 5.37523 5.41559 5.47296 5.63095 5.88740 5.97330 6.04532 6.07964 6.52759 6.58351 7.11279 7.22241 7.54918 8.08796 8.68972 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.913751 B =10447.688720 C =11441.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C 0.529 3.471 4 O -0.576 6.576 5 N -0.714 5.714 6 C 0.162 3.838 7 H 0.075 0.925 8 C -0.120 4.120 9 C -0.103 4.103 10 C 0.041 3.959 11 N -0.503 5.503 12 C 0.050 3.950 13 C 0.410 3.590 14 O -0.617 6.617 15 N -0.570 5.570 16 C -0.329 4.329 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.037 3.963 25 C -0.084 4.084 26 C -0.168 4.168 27 C -0.182 4.182 28 C -0.086 4.086 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.408 0.592 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.109 0.891 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -13.592 13.964 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C 0.317 3.683 4 O -0.455 6.455 5 N -0.365 5.365 6 C 0.056 3.944 7 H 0.093 0.907 8 C -0.159 4.159 9 C -0.141 4.141 10 C -0.086 4.086 11 N -0.226 5.226 12 C -0.082 4.082 13 C 0.197 3.803 14 O -0.506 6.506 15 N -0.206 5.206 16 C -0.459 4.459 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.092 4.092 25 C -0.122 4.122 26 C -0.186 4.186 27 C -0.200 4.200 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.244 0.756 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.127 0.873 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.097 -13.534 14.988 20.430 hybrid contribution -1.220 0.374 -1.627 2.068 sum 1.877 -13.160 13.361 18.848 Atomic orbital electron populations 1.21815 0.90049 1.04421 1.02821 1.21669 0.98194 0.90294 0.98837 1.20782 0.79759 0.87451 0.80349 1.90647 1.37158 1.79357 1.38369 1.45963 1.48998 1.11857 1.29650 1.20705 0.97899 0.80689 0.95073 0.90695 1.21844 0.99066 0.95706 0.99273 1.21464 1.02167 0.95204 0.95244 1.22269 0.96432 0.96480 0.93459 1.62411 1.49483 1.01984 1.08707 1.22146 0.93181 1.03644 0.89247 1.22055 0.92662 0.82884 0.82708 1.90387 1.42890 1.52389 1.64888 1.42147 1.10843 1.55422 1.12180 1.19675 0.88649 1.41028 0.96552 0.90218 1.26024 1.02458 0.96027 0.96774 1.69676 1.31275 1.42276 1.12809 0.84912 0.77498 0.78225 0.77968 1.19696 1.19862 1.19710 1.22439 1.01471 0.89746 0.95527 1.21377 0.96252 0.97785 0.96742 1.23466 0.98560 0.99990 0.96565 1.23475 0.98860 1.01220 0.96437 1.21496 0.96628 0.98334 0.95891 0.92138 0.91478 0.89018 0.75628 0.92658 0.92076 0.89974 0.90833 0.94562 0.90346 0.87003 0.87276 0.77067 0.91337 0.91292 0.91782 0.91552 0.88004 0.84876 0.84659 0.87333 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.42 71.98 0.61 -1.28 16 2 C -0.09 -1.62 0.84 -51.82 -0.04 -1.66 16 3 C 0.53 13.71 6.48 87.66 0.57 14.28 16 4 O -0.58 -19.29 15.20 -3.05 -0.05 -19.34 16 5 N -0.71 -17.72 4.91 -442.27 -2.17 -19.89 16 6 C 0.16 4.62 2.62 45.05 0.12 4.73 16 7 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 8 C -0.12 -3.35 5.58 30.68 0.17 -3.18 16 9 C -0.10 -2.70 6.09 30.65 0.19 -2.51 16 10 C 0.04 1.29 5.09 86.33 0.44 1.73 16 11 N -0.50 -15.89 4.86 -900.93 -4.38 -20.26 16 12 C 0.05 1.63 5.86 85.56 0.50 2.13 16 13 C 0.41 17.97 7.20 87.66 0.63 18.61 16 14 O -0.62 -30.39 11.20 -3.06 -0.03 -30.43 16 15 N -0.57 -27.77 5.29 -306.98 -1.62 -29.39 16 16 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 17 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 19 N -0.92 -48.52 13.05 21.66 0.28 -48.23 16 20 Si 0.99 41.73 29.55 68.60 2.03 43.75 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 C 0.04 1.16 4.44 86.33 0.38 1.54 16 25 C -0.08 -1.57 5.72 30.53 0.17 -1.39 16 26 C -0.17 -3.06 10.79 26.06 0.28 -2.78 16 27 C -0.18 -3.17 10.78 26.06 0.28 -2.89 16 28 C -0.09 -1.41 5.92 30.53 0.18 -1.23 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.92 7.37 -2.39 -0.02 0.90 16 31 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16 32 H 0.41 8.82 7.83 -92.71 -0.73 8.10 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.39 6.00 -2.39 -0.01 1.37 16 38 H 0.08 2.24 8.06 -2.39 -0.02 2.22 16 39 H 0.11 3.26 8.06 -2.39 -0.02 3.25 16 40 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.40 18.56 7.90 -92.70 -0.73 17.83 16 42 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 44 H 0.06 2.43 5.36 -2.38 -0.01 2.42 16 45 H 0.07 1.53 7.01 -2.39 -0.02 1.52 16 46 H 0.10 1.41 7.89 -2.39 -0.02 1.39 16 47 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 49 H 0.11 1.30 7.83 -2.38 -0.02 1.29 16 50 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 Total: -1.00 -66.30 391.73 -0.68 -66.98 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: -0.51 Total: 47.99 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.76 Total: 8.82 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -7.89 Total: -117.78 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.08 Total: -49.77 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -66.30 -0.68 -66.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567766383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.450 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds