Wall clock time and date at job start Tue Mar 31 2020 19:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.57577 * 2 1 4 4 C 1.34780 * 119.99739 * 300.15935 * 3 2 1 5 5 O 1.21282 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00023 * 180.02562 * 4 3 2 7 7 H 1.09005 * 115.54813 * 325.71531 * 6 4 3 8 8 C 1.52994 * 117.50302 * 111.38847 * 6 4 3 9 9 C 1.52990 * 59.99952 * 107.49246 * 8 6 4 10 10 C 1.52991 * 138.59223 * 130.89695 * 9 8 6 11 11 C 1.52998 * 138.58725 * 229.11325 * 9 8 6 12 12 C 1.53117 * 109.52314 * 120.15840 * 2 1 3 13 13 C 1.53035 * 109.27946 * 177.56236 * 12 2 1 14 14 N 1.46847 * 109.52115 * 300.81743 * 13 12 2 15 15 C 1.46901 * 110.99978 * 185.83998 * 14 13 12 16 16 C 1.50702 * 109.47172 * 169.43287 * 15 14 13 17 17 O 1.21288 * 119.99988 * 353.78424 * 16 15 14 18 18 N 1.34776 * 119.99793 * 173.78060 * 16 15 14 19 19 C 1.37096 * 119.99773 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00315 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00023 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47199 * 90.00333 * 23 21 19 25 25 H 1.48498 * 109.47088 * 209.99850 * 23 21 19 26 26 H 1.48495 * 109.47248 * 329.99945 * 23 21 19 27 27 C 1.46847 * 111.19786 * 61.74377 * 14 13 12 28 28 C 1.53031 * 109.52095 * 298.25645 * 27 14 13 29 29 H 1.09000 * 109.47572 * 299.84283 * 1 2 3 30 30 H 1.08998 * 109.47033 * 59.84562 * 1 2 3 31 31 H 1.09002 * 109.47335 * 179.84200 * 1 2 3 32 32 H 0.96993 * 120.00157 * 120.15305 * 3 2 1 33 33 H 1.09005 * 117.50067 * 214.97698 * 8 6 4 34 34 H 1.09002 * 117.50031 * 359.97438 * 8 6 4 35 35 H 1.09001 * 117.50282 * 238.37934 * 10 9 8 36 36 H 1.08999 * 117.49991 * 23.39992 * 10 9 8 37 37 H 1.09001 * 117.49843 * 336.59419 * 11 9 8 38 38 H 1.08999 * 117.50050 * 121.59100 * 11 9 8 39 39 H 1.09012 * 109.50362 * 297.50313 * 12 2 1 40 40 H 1.08997 * 109.50675 * 57.61523 * 12 2 1 41 41 H 1.09001 * 109.46401 * 60.83707 * 13 12 2 42 42 H 1.09007 * 109.46193 * 180.80242 * 13 12 2 43 43 H 1.08996 * 109.47165 * 289.43905 * 15 14 13 44 44 H 1.09008 * 109.47309 * 49.43497 * 15 14 13 45 45 H 0.97001 * 120.00224 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99437 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.45777 * 178.23831 * 27 14 13 48 48 H 1.09001 * 109.45889 * 58.27271 * 27 14 13 49 49 H 1.09004 * 109.50598 * 299.23671 * 28 27 14 50 50 H 1.09005 * 109.50095 * 179.12184 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3803 0.0000 4 6 1.6941 2.2117 -1.0092 5 8 0.9941 1.8170 -1.9176 6 6 2.1994 3.6314 -1.0096 7 1 2.2907 4.0982 -0.0288 8 6 3.2311 4.0139 -2.0727 9 6 1.7935 4.5255 -2.1828 10 6 1.0610 5.8480 -2.4178 11 6 0.6823 4.6087 -3.2312 12 6 2.0417 -0.7250 1.2478 13 6 3.5708 -0.7751 1.2117 14 7 4.0102 -1.4789 0.0001 15 6 5.4670 -1.6677 0.0001 16 6 5.8516 -2.6088 -1.1124 17 8 4.9908 -3.1639 -1.7619 18 7 7.1521 -2.8334 -1.3856 19 6 7.5020 -3.6899 -2.3973 20 1 6.7355 -4.1843 -2.9756 21 6 8.8428 -3.9219 -2.6787 22 7 9.1782 -4.7425 -3.6488 23 14 10.1686 -3.0674 -1.6780 24 1 10.5251 -3.9090 -0.5076 25 1 11.3715 -2.8610 -2.5239 26 1 9.6632 -1.7529 -1.2069 27 6 3.5708 -0.7752 -1.2116 28 6 2.0418 -0.7251 -1.2478 29 1 -0.3634 0.5114 0.8914 30 1 -0.3633 0.5162 -0.8886 31 1 -0.3634 -1.0277 -0.0028 32 1 2.5809 1.6959 0.7263 33 1 4.0009 4.7325 -1.7915 34 1 3.5447 3.2385 -2.7717 35 1 0.3616 6.1793 -1.6502 36 1 1.6052 6.6403 -2.9317 37 1 0.9773 4.5857 -4.2802 38 1 -0.2662 4.1244 -2.9989 39 1 1.7161 -0.1890 2.1394 40 1 1.6447 -1.7399 1.2675 41 1 3.9674 0.2402 1.2060 42 1 3.9378 -1.3033 2.0918 43 1 5.9580 -0.7064 -0.1511 44 1 5.7789 -2.0886 0.9561 45 1 7.8406 -2.3897 -0.8660 46 1 10.1141 -4.9047 -3.8449 47 1 3.9379 -1.3034 -2.0915 48 1 3.9675 0.2401 -1.2059 49 1 1.6447 -1.7401 -1.2674 50 1 1.7162 -0.1891 -2.1393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569576239.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:39 Heat of formation + Delta-G solvation = 2.109344 kcal Electronic energy + Delta-G solvation = -29895.655788 eV Core-core repulsion = 25925.126617 eV Total energy + Delta-G solvation = -3970.529171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.80239 -39.20368 -38.23845 -37.18464 -35.08865 -33.85390 -33.08134 -31.80026 -31.59131 -30.81055 -29.11526 -26.25966 -24.69986 -23.86167 -23.21488 -22.64429 -21.75292 -20.84554 -19.40745 -19.32655 -19.08812 -18.25369 -17.38497 -16.20967 -15.76342 -15.45235 -15.33648 -15.21629 -15.05404 -14.83808 -14.66671 -14.41215 -13.91773 -13.84504 -13.63751 -13.22926 -12.89075 -12.73738 -12.56866 -12.36155 -12.14267 -12.09070 -11.98368 -11.87891 -11.73090 -11.56778 -11.35209 -11.09884 -11.03588 -10.59304 -10.55006 -10.49216 -10.38884 -10.33307 -10.25675 -9.96085 -9.52000 -9.51095 -9.11097 -8.51120 -8.15642 -7.92074 -6.29313 -3.80462 2.38205 2.87523 3.02529 3.06949 3.15160 3.46001 3.56658 3.76967 3.94056 4.01540 4.11355 4.43682 4.51059 4.61464 4.75419 4.79258 4.84132 4.91243 5.15588 5.19962 5.24788 5.26262 5.33532 5.34025 5.38827 5.42270 5.49093 5.52657 5.60877 5.62429 5.69123 5.69561 5.72569 5.76961 5.85668 5.89684 5.91920 5.96130 6.01367 6.10692 6.21839 6.37691 6.53385 6.58724 7.21687 7.36863 7.44826 7.60974 8.16902 8.18327 8.62724 8.97680 9.44688 9.86506 10.83986 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002825 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.603165 B = 9908.706004 C =11021.260016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 N -0.718 5.718 4 C 0.543 3.457 5 O -0.526 6.526 6 C -0.144 4.144 7 H 0.120 0.880 8 C -0.101 4.101 9 C -0.199 4.199 10 C -0.132 4.132 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.055 3.945 14 N -0.513 5.513 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.556 6.556 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.061 3.939 28 C -0.121 4.121 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.369 0.631 46 H 0.273 0.727 47 H 0.096 0.904 48 H 0.021 0.979 49 H 0.080 0.920 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.469 20.559 11.666 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 N -0.370 5.370 4 C 0.329 3.671 5 O -0.402 6.402 6 C -0.165 4.165 7 H 0.138 0.862 8 C -0.138 4.138 9 C -0.200 4.200 10 C -0.168 4.168 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.073 4.073 14 N -0.237 5.237 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.437 6.437 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.067 4.067 28 C -0.160 4.160 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.114 0.886 48 H 0.039 0.961 49 H 0.098 0.902 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.626 19.292 10.432 26.361 hybrid contribution 2.078 1.511 1.305 2.882 sum -12.548 20.803 11.737 26.981 Atomic orbital electron populations 1.22177 0.94254 1.02552 1.02852 1.20440 0.93857 0.80223 0.96472 1.46123 1.53474 1.12066 1.25340 1.19582 0.79976 0.85787 0.81734 1.90647 1.37209 1.76723 1.35611 1.21997 1.05542 0.93177 0.95774 0.86212 1.22674 0.90199 1.01958 0.98960 1.21118 0.97089 1.00913 1.00878 1.22762 1.01363 0.90195 1.02513 1.22590 0.97492 0.99038 0.95748 1.21884 0.95463 1.01921 0.96137 1.22090 0.95197 0.96233 0.93805 1.61517 1.11151 1.49385 1.01693 1.21874 0.88588 0.98415 0.99869 1.19663 0.83013 0.86396 0.87135 1.90555 1.48663 1.52199 1.52277 1.42228 1.05625 1.42590 1.32868 1.19424 0.93917 1.20233 1.09587 0.86290 1.25034 0.97159 0.97147 0.96880 1.69625 1.18154 1.35178 1.29309 0.86675 0.82402 0.79702 0.80608 1.19637 1.20232 1.19598 1.22117 0.95135 0.95271 0.94136 1.21969 0.95265 1.01027 0.97728 0.93080 0.90431 0.91653 0.76982 0.87664 0.87867 0.88665 0.88383 0.88491 0.88210 0.91172 0.89154 0.95520 0.90549 0.93741 0.89206 0.79811 0.91661 0.88606 0.96130 0.90177 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.42 37.16 0.31 -1.43 16 2 C 0.18 1.96 0.66 -131.70 -0.09 1.88 16 3 N -0.72 -7.15 4.16 -47.49 -0.20 -7.34 16 4 C 0.54 6.30 7.03 -10.99 -0.08 6.22 16 5 O -0.53 -7.81 12.46 5.56 0.07 -7.74 16 6 C -0.14 -1.33 6.19 -91.78 -0.57 -1.89 16 7 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.10 -0.91 10.23 -26.74 -0.27 -1.19 16 9 C -0.20 -1.91 5.05 -154.52 -0.78 -2.69 16 10 C -0.13 -0.99 10.53 -26.74 -0.28 -1.27 16 11 C -0.11 -1.06 10.16 -26.73 -0.27 -1.33 16 12 C -0.12 -1.14 4.93 -26.65 -0.13 -1.27 16 13 C 0.06 0.62 5.30 -3.84 -0.02 0.59 16 14 N -0.51 -8.04 4.35 -236.11 -1.03 -9.06 16 15 C 0.04 0.73 5.45 -4.97 -0.03 0.71 16 16 C 0.45 10.30 7.31 -10.98 -0.08 10.22 16 17 O -0.56 -14.93 14.28 5.55 0.08 -14.85 16 18 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 19 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 23 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 27 C 0.06 1.00 4.97 -3.84 -0.02 0.98 16 28 C -0.12 -1.78 4.71 -26.65 -0.13 -1.91 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 3.04 7.47 -40.82 -0.30 2.73 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.26 7.01 -51.93 -0.36 -0.10 16 42 H 0.08 0.78 8.01 -51.92 -0.42 0.36 16 43 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.09 1.30 7.98 -51.92 -0.41 0.88 16 45 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.10 1.97 6.05 -51.93 -0.31 1.66 16 48 H 0.02 0.32 7.69 -51.93 -0.40 -0.08 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.08 1.38 6.14 -51.93 -0.32 1.06 16 LS Contribution 393.17 15.07 5.92 5.92 Total: -1.00 -34.05 393.17 -9.96 -44.02 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -8.14 Total: 13.87 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.68 Total: -0.11 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.51 Total: -55.80 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.15 Total: -22.59 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.05 -9.96 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569576239.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.125 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds