Wall clock time and date at job start Tue Mar 31 2020 19:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.57577 * 2 1 4 4 C 1.34780 * 119.99739 * 300.15935 * 3 2 1 5 5 O 1.21282 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00023 * 180.02562 * 4 3 2 7 7 H 1.09005 * 115.54813 * 325.71531 * 6 4 3 8 8 C 1.52994 * 117.50302 * 111.38847 * 6 4 3 9 9 C 1.52990 * 59.99952 * 107.49246 * 8 6 4 10 10 C 1.52991 * 138.59223 * 130.89695 * 9 8 6 11 11 C 1.52998 * 138.58725 * 229.11325 * 9 8 6 12 12 C 1.53117 * 109.52314 * 120.15840 * 2 1 3 13 13 C 1.53035 * 109.27946 * 177.56236 * 12 2 1 14 14 N 1.46847 * 109.52115 * 300.81743 * 13 12 2 15 15 C 1.46901 * 110.99978 * 185.83998 * 14 13 12 16 16 C 1.50702 * 109.47172 * 169.43287 * 15 14 13 17 17 O 1.21288 * 119.99988 * 353.78424 * 16 15 14 18 18 N 1.34776 * 119.99793 * 173.78060 * 16 15 14 19 19 C 1.37096 * 119.99773 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00315 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00023 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47199 * 90.00333 * 23 21 19 25 25 H 1.48498 * 109.47088 * 209.99850 * 23 21 19 26 26 H 1.48495 * 109.47248 * 329.99945 * 23 21 19 27 27 C 1.46847 * 111.19786 * 61.74377 * 14 13 12 28 28 C 1.53031 * 109.52095 * 298.25645 * 27 14 13 29 29 H 1.09000 * 109.47572 * 299.84283 * 1 2 3 30 30 H 1.08998 * 109.47033 * 59.84562 * 1 2 3 31 31 H 1.09002 * 109.47335 * 179.84200 * 1 2 3 32 32 H 0.96993 * 120.00157 * 120.15305 * 3 2 1 33 33 H 1.09005 * 117.50067 * 214.97698 * 8 6 4 34 34 H 1.09002 * 117.50031 * 359.97438 * 8 6 4 35 35 H 1.09001 * 117.50282 * 238.37934 * 10 9 8 36 36 H 1.08999 * 117.49991 * 23.39992 * 10 9 8 37 37 H 1.09001 * 117.49843 * 336.59419 * 11 9 8 38 38 H 1.08999 * 117.50050 * 121.59100 * 11 9 8 39 39 H 1.09012 * 109.50362 * 297.50313 * 12 2 1 40 40 H 1.08997 * 109.50675 * 57.61523 * 12 2 1 41 41 H 1.09001 * 109.46401 * 60.83707 * 13 12 2 42 42 H 1.09007 * 109.46193 * 180.80242 * 13 12 2 43 43 H 1.08996 * 109.47165 * 289.43905 * 15 14 13 44 44 H 1.09008 * 109.47309 * 49.43497 * 15 14 13 45 45 H 0.97001 * 120.00224 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99437 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.45777 * 178.23831 * 27 14 13 48 48 H 1.09001 * 109.45889 * 58.27271 * 27 14 13 49 49 H 1.09004 * 109.50598 * 299.23671 * 28 27 14 50 50 H 1.09005 * 109.50095 * 179.12184 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3803 0.0000 4 6 1.6941 2.2117 -1.0092 5 8 0.9941 1.8170 -1.9176 6 6 2.1994 3.6314 -1.0096 7 1 2.2907 4.0982 -0.0288 8 6 3.2311 4.0139 -2.0727 9 6 1.7935 4.5255 -2.1828 10 6 1.0610 5.8480 -2.4178 11 6 0.6823 4.6087 -3.2312 12 6 2.0417 -0.7250 1.2478 13 6 3.5708 -0.7751 1.2117 14 7 4.0102 -1.4789 0.0001 15 6 5.4670 -1.6677 0.0001 16 6 5.8516 -2.6088 -1.1124 17 8 4.9908 -3.1639 -1.7619 18 7 7.1521 -2.8334 -1.3856 19 6 7.5020 -3.6899 -2.3973 20 1 6.7355 -4.1843 -2.9756 21 6 8.8428 -3.9219 -2.6787 22 7 9.1782 -4.7425 -3.6488 23 14 10.1686 -3.0674 -1.6780 24 1 10.5251 -3.9090 -0.5076 25 1 11.3715 -2.8610 -2.5239 26 1 9.6632 -1.7529 -1.2069 27 6 3.5708 -0.7752 -1.2116 28 6 2.0418 -0.7251 -1.2478 29 1 -0.3634 0.5114 0.8914 30 1 -0.3633 0.5162 -0.8886 31 1 -0.3634 -1.0277 -0.0028 32 1 2.5809 1.6959 0.7263 33 1 4.0009 4.7325 -1.7915 34 1 3.5447 3.2385 -2.7717 35 1 0.3616 6.1793 -1.6502 36 1 1.6052 6.6403 -2.9317 37 1 0.9773 4.5857 -4.2802 38 1 -0.2662 4.1244 -2.9989 39 1 1.7161 -0.1890 2.1394 40 1 1.6447 -1.7399 1.2675 41 1 3.9674 0.2402 1.2060 42 1 3.9378 -1.3033 2.0918 43 1 5.9580 -0.7064 -0.1511 44 1 5.7789 -2.0886 0.9561 45 1 7.8406 -2.3897 -0.8660 46 1 10.1141 -4.9047 -3.8449 47 1 3.9379 -1.3034 -2.0915 48 1 3.9675 0.2401 -1.2059 49 1 1.6447 -1.7401 -1.2674 50 1 1.7162 -0.1891 -2.1393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569576239.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:38 Heat of formation + Delta-G solvation = -23.107092 kcal Electronic energy + Delta-G solvation = -29896.749255 eV Core-core repulsion = 25925.126617 eV Total energy + Delta-G solvation = -3971.622638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76046 -40.51151 -39.54300 -38.16999 -36.34520 -35.75520 -33.86956 -33.73901 -32.63046 -31.86859 -30.32757 -27.77204 -25.79432 -25.28924 -24.29395 -23.29227 -22.80971 -21.67904 -21.26052 -20.26227 -20.14584 -20.01017 -18.20693 -17.74808 -16.99387 -16.82155 -16.50010 -16.23406 -16.16078 -15.89340 -15.54829 -15.49412 -15.30387 -15.13727 -14.92550 -14.68816 -14.43621 -14.02133 -13.83572 -13.57660 -13.34317 -13.24997 -13.00965 -12.89164 -12.73682 -12.51306 -12.42718 -12.38070 -12.35698 -12.13865 -11.98381 -11.65269 -11.50146 -11.38647 -11.14512 -11.04669 -10.93415 -10.44245 -10.39836 -10.23553 -9.99791 -9.14407 -8.41163 -6.02008 1.29130 1.35574 1.44234 1.53048 1.97743 2.07460 2.23118 2.64245 2.75219 2.87417 3.14628 3.22342 3.33631 3.62618 3.78489 3.83396 3.86966 3.94020 4.10446 4.12007 4.26655 4.29309 4.40407 4.46089 4.52389 4.53722 4.59922 4.63235 4.73933 4.76039 4.77950 4.79289 4.79585 4.85078 4.97017 4.98196 4.99581 5.00971 5.11177 5.19697 5.25697 5.27886 5.32564 5.53443 5.65449 5.91205 6.04306 6.27231 6.60892 6.66234 6.89460 7.35505 7.40893 7.99624 8.76902 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002825 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.603165 B = 9908.706004 C =11021.260016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 N -0.705 5.705 4 C 0.535 3.465 5 O -0.567 6.567 6 C -0.138 4.138 7 H 0.154 0.846 8 C -0.099 4.099 9 C -0.223 4.223 10 C -0.103 4.103 11 C -0.136 4.136 12 C -0.109 4.109 13 C 0.053 3.947 14 N -0.535 5.535 15 C 0.056 3.944 16 C 0.449 3.551 17 O -0.607 6.607 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.051 0.949 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.231 1.231 27 C 0.073 3.927 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.040 0.960 48 H 0.031 0.969 49 H 0.058 0.942 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 24.275 16.597 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.096 3.904 3 N -0.358 5.358 4 C 0.322 3.678 5 O -0.446 6.446 6 C -0.159 4.159 7 H 0.171 0.829 8 C -0.136 4.136 9 C -0.224 4.224 10 C -0.140 4.140 11 C -0.173 4.173 12 C -0.147 4.147 13 C -0.074 4.074 14 N -0.260 5.260 15 C -0.075 4.075 16 C 0.236 3.764 17 O -0.491 6.491 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.154 1.154 27 C -0.055 4.055 28 C -0.154 4.154 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.145 0.855 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.077 0.923 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.214 23.035 15.417 30.707 hybrid contribution 1.485 0.252 -0.367 1.550 sum -11.730 23.287 15.050 30.106 Atomic orbital electron populations 1.22102 0.93953 1.02583 1.02633 1.20289 0.94041 0.80740 0.95317 1.45971 1.53203 1.11139 1.25449 1.20131 0.79378 0.86959 0.81296 1.90650 1.39098 1.77651 1.37210 1.22072 1.05077 0.91501 0.97229 0.82864 1.22696 0.90665 1.01800 0.98447 1.21370 0.97305 1.02507 1.01174 1.22842 1.00307 0.89298 1.01523 1.22572 0.97236 1.01479 0.95979 1.21888 0.94700 1.01720 0.96414 1.22283 0.95827 0.97372 0.91917 1.61433 1.10706 1.50982 1.02915 1.21823 0.89587 0.97910 0.98176 1.21026 0.81958 0.85873 0.87509 1.90544 1.50120 1.54106 1.54318 1.42045 1.06811 1.42408 1.32300 1.18974 0.93262 1.22104 1.11274 0.93047 1.26156 0.99847 0.97556 0.98043 1.69819 1.19292 1.37084 1.31604 0.85333 0.77377 0.79962 0.78619 1.17922 1.20111 1.15417 1.21821 0.95864 0.94801 0.93001 1.21838 0.94336 1.00112 0.99134 0.90805 0.93028 0.91567 0.75000 0.84984 0.90347 0.87321 0.86750 0.88934 0.89785 0.87206 0.90076 0.93022 0.88269 0.90792 0.85520 0.77513 0.91189 0.94162 0.95127 0.92284 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.42 71.98 0.61 -2.61 16 2 C 0.18 3.81 0.66 3.68 0.00 3.81 16 3 N -0.70 -12.23 4.16 -422.56 -1.76 -13.99 16 4 C 0.53 11.87 7.03 87.65 0.62 12.49 16 5 O -0.57 -17.55 12.46 -3.04 -0.04 -17.59 16 6 C -0.14 -2.22 6.19 -11.55 -0.07 -2.29 16 7 H 0.15 1.41 8.14 -2.38 -0.02 1.39 16 8 C -0.10 -1.63 10.23 30.59 0.31 -1.32 16 9 C -0.22 -3.98 5.05 -52.19 -0.26 -4.24 16 10 C -0.10 -1.34 10.53 30.59 0.32 -1.02 16 11 C -0.14 -2.62 10.16 30.59 0.31 -2.31 16 12 C -0.11 -1.75 4.93 30.65 0.15 -1.59 16 13 C 0.05 0.94 5.30 86.33 0.46 1.39 16 14 N -0.53 -15.80 4.35 -900.92 -3.92 -19.71 16 15 C 0.06 1.71 5.45 85.56 0.47 2.17 16 16 C 0.45 20.66 7.31 87.66 0.64 21.30 16 17 O -0.61 -34.71 14.28 -3.05 -0.04 -34.75 16 18 N -0.59 -28.38 5.09 -306.99 -1.56 -29.94 16 19 C -0.33 -19.51 10.16 84.04 0.85 -18.66 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 22 N -0.94 -57.44 13.96 21.66 0.30 -57.14 16 23 Si 0.97 38.97 27.74 68.60 1.90 40.88 16 24 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 27 C 0.07 2.45 4.97 86.32 0.43 2.88 16 28 C -0.12 -3.55 4.71 30.64 0.14 -3.40 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.37 6.16 -2.39 -0.01 1.35 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.41 4.42 7.47 -92.71 -0.69 3.72 16 33 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 0.70 7.01 -2.39 -0.02 0.69 16 42 H 0.10 1.41 8.01 -2.38 -0.02 1.39 16 43 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 44 H 0.13 3.01 7.98 -2.38 -0.02 2.99 16 45 H 0.39 15.25 5.76 -92.71 -0.53 14.72 16 46 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.04 1.79 6.05 -2.39 -0.01 1.77 16 48 H 0.03 0.94 7.69 -2.39 -0.02 0.92 16 49 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.06 2.13 6.14 -2.38 -0.01 2.11 16 Total: -1.00 -85.42 393.17 0.01 -85.42 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.33 Total: 40.77 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.45 Total: 6.07 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -6.94 Total: -120.79 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.08 Total: -52.35 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.88 kcal Total: -85.42 0.01 -85.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569576239.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.310 kcal (2) G-P(sol) polarization free energy of solvation -85.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds