Wall clock time and date at job start Tue Mar 31 2020 19:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.57126 * 2 1 4 4 C 1.34777 * 120.00279 * 300.15092 * 3 2 1 5 5 O 1.21285 * 119.99493 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00221 * 180.02562 * 4 3 2 7 7 H 1.09000 * 115.54711 * 34.28292 * 6 4 3 8 8 C 1.53003 * 117.49860 * 248.60970 * 6 4 3 9 9 C 1.52992 * 60.00003 * 252.51283 * 8 6 4 10 10 C 1.52993 * 138.58878 * 130.89665 * 9 8 6 11 11 C 1.52996 * 138.58599 * 229.11060 * 9 8 6 12 12 C 1.53123 * 109.52253 * 120.15679 * 2 1 3 13 13 C 1.53036 * 109.27788 * 177.56250 * 12 2 1 14 14 N 1.46842 * 109.52190 * 300.81892 * 13 12 2 15 15 C 1.46907 * 110.99676 * 185.84074 * 14 13 12 16 16 C 1.50703 * 109.46656 * 169.99859 * 15 14 13 17 17 O 1.21289 * 120.00562 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99846 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00128 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00090 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99623 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00501 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99722 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46609 * 60.00587 * 23 21 19 25 25 H 1.48493 * 109.47059 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47054 * 300.00664 * 23 21 19 27 27 C 1.46848 * 111.20069 * 61.74451 * 14 13 12 28 28 C 1.53032 * 109.52348 * 298.25721 * 27 14 13 29 29 H 1.08998 * 109.47352 * 299.84379 * 1 2 3 30 30 H 1.09000 * 109.46881 * 59.84744 * 1 2 3 31 31 H 1.09003 * 109.47137 * 179.84099 * 1 2 3 32 32 H 0.97002 * 120.00124 * 120.15830 * 3 2 1 33 33 H 1.08995 * 117.49721 * 0.02562 * 8 6 4 34 34 H 1.09004 * 117.49675 * 145.01813 * 8 6 4 35 35 H 1.08997 * 117.49641 * 238.37912 * 10 9 8 36 36 H 1.09000 * 117.49873 * 23.40127 * 10 9 8 37 37 H 1.08999 * 117.50173 * 336.59276 * 11 9 8 38 38 H 1.09002 * 117.49936 * 121.59710 * 11 9 8 39 39 H 1.09000 * 109.50367 * 57.61795 * 12 2 1 40 40 H 1.09006 * 109.50264 * 297.50134 * 12 2 1 41 41 H 1.09002 * 109.46126 * 60.83950 * 13 12 2 42 42 H 1.09000 * 109.45809 * 180.80452 * 13 12 2 43 43 H 1.08998 * 109.47181 * 289.99635 * 15 14 13 44 44 H 1.08994 * 109.47065 * 50.00349 * 15 14 13 45 45 H 0.97005 * 119.99724 * 0.02562 * 18 16 15 46 46 H 0.97005 * 120.00437 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.46014 * 58.27448 * 27 14 13 48 48 H 1.08995 * 109.46374 * 178.23478 * 27 14 13 49 49 H 1.08996 * 109.50421 * 179.11872 * 28 27 14 50 50 H 1.08997 * 109.50237 * 299.24201 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0207 1.3804 0.0000 4 6 1.6941 2.2118 -1.0093 5 8 0.9935 1.8172 -1.9173 6 6 2.1994 3.6315 -1.0095 7 1 3.1929 3.7769 -0.5854 8 6 1.1726 4.7468 -0.8027 9 6 1.7939 4.5254 -2.1831 10 6 1.3380 4.3753 -3.6358 11 6 2.4655 5.3480 -3.2844 12 6 2.0417 -0.7250 1.2479 13 6 3.5708 -0.7751 1.2117 14 7 4.0102 -1.4788 0.0002 15 6 5.4671 -1.6676 0.0003 16 6 5.8531 -2.5978 -1.1209 17 8 4.9988 -3.0577 -1.8487 18 7 7.1478 -2.9177 -1.3156 19 6 7.4990 -3.7635 -2.3358 20 1 6.7383 -4.1729 -2.9838 21 6 8.8337 -4.0937 -2.5360 22 7 9.7593 -3.5958 -1.7473 23 14 9.3123 -5.2466 -3.9258 24 1 8.8892 -4.6604 -5.2230 25 1 10.7850 -5.4370 -3.9261 26 1 8.6430 -6.5582 -3.7335 27 6 3.5709 -0.7752 -1.2116 28 6 2.0418 -0.7250 -1.2478 29 1 -0.3634 0.5114 0.8914 30 1 -0.3633 0.5162 -0.8886 31 1 -0.3633 -1.0277 -0.0029 32 1 2.5809 1.6960 0.7263 33 1 0.1318 4.4536 -0.6659 34 1 1.4908 5.6262 -0.2427 35 1 1.6097 3.4569 -4.1562 36 1 0.3720 4.8013 -3.9067 37 1 2.2413 6.4140 -3.3242 38 1 3.4791 5.0698 -3.5734 39 1 1.6447 -1.7400 1.2675 40 1 1.7161 -0.1889 2.1394 41 1 3.9674 0.2402 1.2061 42 1 3.9377 -1.3032 2.0918 43 1 5.9583 -0.7049 -0.1410 44 1 5.7776 -2.0978 0.9523 45 1 7.8311 -2.5496 -0.7337 46 1 10.6911 -3.8267 -1.8868 47 1 3.9675 0.2401 -1.2059 48 1 3.9380 -1.3033 -2.0915 49 1 1.7163 -0.1891 -2.1393 50 1 1.6448 -1.7400 -1.2673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569576240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:43 Heat of formation + Delta-G solvation = -4.657919 kcal Electronic energy + Delta-G solvation = -29791.059414 eV Core-core repulsion = 25820.236792 eV Total energy + Delta-G solvation = -3970.822622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.75190 -39.13289 -38.10763 -37.10173 -35.00788 -33.79936 -33.04849 -31.71706 -31.20528 -30.72104 -28.99261 -26.11421 -24.67844 -24.01113 -23.13094 -22.59455 -21.72936 -20.83645 -19.37073 -19.19474 -19.00261 -17.83347 -17.33718 -16.17423 -15.78812 -15.31188 -15.28311 -15.10053 -14.95570 -14.76609 -14.49582 -14.41502 -13.89597 -13.76850 -13.58017 -13.52473 -12.79089 -12.70779 -12.47248 -12.15455 -12.07703 -11.93867 -11.88250 -11.68231 -11.53959 -11.46551 -11.21053 -10.99773 -10.94002 -10.52307 -10.43993 -10.39026 -10.36640 -10.29144 -10.23130 -10.19058 -9.47377 -9.44073 -9.06616 -8.37361 -7.94955 -7.79077 -6.39708 -3.80297 2.40798 2.92837 3.21643 3.26934 3.31606 3.47537 3.59048 3.93062 4.02148 4.04073 4.27052 4.46685 4.53695 4.65686 4.83081 4.88984 4.96317 5.06975 5.17903 5.25916 5.26750 5.30809 5.37705 5.40777 5.42747 5.44199 5.54450 5.60708 5.64813 5.68750 5.71774 5.74100 5.81329 5.90392 5.92314 5.96842 5.98697 6.05960 6.17655 6.24466 6.31525 6.46079 6.61616 6.64978 7.34817 7.46999 7.50355 7.57163 8.08770 8.22198 8.64472 9.20480 9.56951 10.09231 10.78092 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002682 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.105157 B =10436.128707 C =11589.557873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 N -0.717 5.717 4 C 0.544 3.456 5 O -0.527 6.527 6 C -0.143 4.143 7 H 0.121 0.879 8 C -0.101 4.101 9 C -0.200 4.200 10 C -0.112 4.112 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.055 3.945 14 N -0.513 5.513 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.059 3.941 28 C -0.121 4.121 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.018 0.982 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 17.464 7.581 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 N -0.369 5.369 4 C 0.330 3.670 5 O -0.403 6.403 6 C -0.165 4.165 7 H 0.139 0.861 8 C -0.138 4.138 9 C -0.201 4.201 10 C -0.149 4.149 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.074 4.074 14 N -0.238 5.238 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.069 4.069 28 C -0.159 4.159 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.036 0.964 48 H 0.120 0.880 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.796 16.343 6.428 23.620 hybrid contribution 1.681 0.566 0.300 1.799 sum -14.115 16.909 6.727 23.030 Atomic orbital electron populations 1.22177 0.94317 1.02492 1.02815 1.20448 0.93802 0.80229 0.96544 1.46119 1.53581 1.12029 1.25181 1.19564 0.79964 0.85771 0.81736 1.90643 1.37417 1.76633 1.35599 1.22005 1.00895 0.90087 1.03472 0.86126 1.22633 0.97642 0.97730 0.95828 1.21124 1.07384 1.04105 0.87444 1.22598 0.98409 1.00774 0.93073 1.22777 0.98227 0.97084 0.98711 1.21882 0.95566 1.01830 0.96099 1.22088 0.95075 0.96247 0.93978 1.61537 1.11424 1.49254 1.01576 1.21830 0.88196 0.98562 0.99883 1.19749 0.83420 0.86257 0.87631 1.90489 1.49229 1.57084 1.49140 1.41863 1.05826 1.42662 1.29855 1.19647 0.92748 1.22265 1.08105 0.87989 1.25245 0.95407 0.98527 0.98748 1.69601 1.01430 1.44868 1.38596 0.85931 0.77124 0.80363 0.80888 1.19928 1.21004 1.19885 1.22177 0.94888 0.95234 0.94564 1.21962 0.95476 1.00859 0.97621 0.93080 0.90463 0.91718 0.76955 0.88177 0.87764 0.88028 0.88615 0.88404 0.88441 0.89239 0.91210 0.95615 0.90595 0.93768 0.89437 0.77553 0.91868 0.96428 0.88036 0.89797 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.42 37.16 0.31 -1.47 16 2 C 0.17 2.05 0.66 -131.69 -0.09 1.96 16 3 N -0.72 -7.52 4.16 -47.49 -0.20 -7.72 16 4 C 0.54 6.54 7.03 -10.99 -0.08 6.46 16 5 O -0.53 -8.01 12.46 5.55 0.07 -7.94 16 6 C -0.14 -1.38 6.19 -91.77 -0.57 -1.95 16 7 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 8 C -0.10 -0.81 10.23 -26.73 -0.27 -1.09 16 9 C -0.20 -1.98 5.05 -154.52 -0.78 -2.76 16 10 C -0.11 -1.12 10.16 -26.73 -0.27 -1.39 16 11 C -0.13 -1.11 10.53 -26.73 -0.28 -1.39 16 12 C -0.12 -1.21 4.93 -26.65 -0.13 -1.34 16 13 C 0.05 0.66 5.30 -3.84 -0.02 0.64 16 14 N -0.51 -8.50 4.40 -236.12 -1.04 -9.54 16 15 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 16 C 0.44 10.57 7.46 -10.98 -0.08 10.49 16 17 O -0.58 -15.63 13.90 5.55 0.08 -15.55 16 18 N -0.57 -14.44 5.29 -10.97 -0.06 -14.49 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.06 1.01 4.96 -3.84 -0.02 1.00 16 28 C -0.12 -1.83 4.72 -26.65 -0.13 -1.96 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 3.28 7.47 -40.82 -0.30 2.98 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.28 7.01 -51.93 -0.36 -0.08 16 42 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 43 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 45 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.02 0.29 7.69 -51.93 -0.40 -0.10 16 48 H 0.10 2.18 5.78 -51.93 -0.30 1.88 16 49 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16 50 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -32.71 395.84 -10.32 -43.03 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.17 Total: 14.02 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.67 Total: -0.02 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.57 Total: -55.75 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.15 Total: -23.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.71 -10.32 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569576240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.373 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds