Wall clock time and date at job start Tue Mar 31 2020 19:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 110.28434 * 2 1 4 4 C 1.34778 * 119.99796 * 59.29987 * 3 2 1 5 5 O 1.21277 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99754 * 179.97438 * 4 3 2 7 7 C 1.53890 * 113.58767 * 277.66461 * 6 4 3 8 8 C 1.53257 * 86.88363 * 220.42744 * 7 6 4 9 9 C 1.52463 * 128.58560 * 165.11106 * 8 7 6 10 10 C 1.52461 * 128.58661 * 245.05559 * 8 7 6 11 11 C 1.53255 * 87.69280 * 25.08135 * 8 7 6 12 12 C 1.54253 * 110.32487 * 122.12758 * 2 1 3 13 13 C 1.54385 * 105.05958 * 118.89858 * 12 2 1 14 14 N 1.48557 * 104.59458 * 23.85283 * 13 12 2 15 15 C 1.46897 * 111.00069 * 200.96402 * 14 13 12 16 16 C 1.50703 * 109.46737 * 290.12676 * 15 14 13 17 17 O 1.21291 * 119.99992 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00194 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99903 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00282 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46747 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.46900 * 120.00102 * 23 21 19 26 26 H 1.48500 * 109.46847 * 240.00163 * 23 21 19 27 27 C 1.48728 * 104.28595 * 320.57290 * 14 13 12 28 28 H 1.08998 * 109.46951 * 60.70150 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69797 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.70033 * 1 2 3 31 31 H 0.97001 * 119.99917 * 239.29738 * 3 2 1 32 32 H 1.09000 * 112.83027 * 48.88260 * 6 4 3 33 33 H 1.09001 * 113.64889 * 334.92579 * 7 6 4 34 34 H 1.09005 * 113.64939 * 105.93218 * 7 6 4 35 35 H 1.08997 * 117.51434 * 225.04840 * 9 8 7 36 36 H 1.09002 * 117.51202 * 10.15082 * 9 8 7 37 37 H 1.09007 * 117.51194 * 349.84981 * 10 8 7 38 38 H 1.09001 * 117.51144 * 134.94838 * 10 8 7 39 39 H 1.08996 * 113.64766 * 220.41335 * 11 8 7 40 40 H 1.09010 * 113.64122 * 89.41044 * 11 8 7 41 41 H 1.09001 * 110.32558 * 237.79378 * 12 2 1 42 42 H 1.09001 * 110.32826 * 0.02562 * 12 2 1 43 43 H 1.09003 * 110.40817 * 142.63159 * 13 12 2 44 44 H 1.09001 * 110.40554 * 264.95445 * 13 12 2 45 45 H 1.09000 * 109.47104 * 50.11796 * 15 14 13 46 46 H 1.08994 * 109.47568 * 170.12897 * 15 14 13 47 47 H 0.96996 * 119.99865 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00465 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.38814 * 280.63976 * 27 14 13 50 50 H 1.08999 * 110.50240 * 158.14590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0380 1.3742 0.0000 4 6 1.7126 2.2128 1.0036 5 8 0.9990 1.8300 1.9065 6 6 2.2355 3.6262 1.0039 7 6 3.6663 3.7533 1.5562 8 6 3.1925 5.0312 2.2572 9 6 3.8714 5.8072 3.3803 10 6 3.6411 6.4687 2.0187 11 6 1.7736 4.4535 2.2165 12 6 2.0659 -0.7693 1.2250 13 6 2.8808 -1.9415 0.6375 14 7 3.2695 -1.4834 -0.7212 15 6 3.6069 -2.6230 -1.5845 16 6 4.9012 -3.2393 -1.1197 17 8 5.4853 -2.7745 -0.1637 18 7 5.4098 -4.3069 -1.7664 19 6 6.5875 -4.8672 -1.3440 20 1 7.1076 -4.4533 -0.4927 21 6 7.1120 -5.9674 -2.0109 22 7 6.4795 -6.4707 -3.0470 23 14 8.7165 -6.7314 -1.4349 24 1 9.2252 -5.9845 -0.2565 25 1 8.4829 -8.1488 -1.0589 26 1 9.7164 -6.6683 -2.5310 27 6 2.0662 -0.7698 -1.2261 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 2.6084 1.6804 -0.7223 32 1 2.0885 4.1317 0.0495 33 1 3.9421 2.9539 2.2440 34 1 4.4179 3.9298 0.7867 35 1 3.2491 6.1371 4.2121 36 1 4.8932 5.5289 3.6385 37 1 4.5113 6.6255 1.3813 38 1 2.8671 7.2336 1.9550 39 1 1.0080 5.1912 1.9765 40 1 1.5227 3.8489 3.0882 41 1 2.7082 -0.1250 1.8254 42 1 1.2389 -1.1473 1.8261 43 1 3.7672 -2.1295 1.2434 44 1 2.2655 -2.8392 0.5765 45 1 2.8114 -3.3663 -1.5324 46 1 3.7167 -2.2797 -2.6131 47 1 4.9429 -4.6783 -2.5312 48 1 6.8455 -7.2390 -3.5125 49 1 1.3230 -1.4833 -1.5818 50 1 2.3394 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569647346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:38 Heat of formation + Delta-G solvation = -14.418679 kcal Electronic energy + Delta-G solvation = -29135.706731 eV Core-core repulsion = 25164.460851 eV Total energy + Delta-G solvation = -3971.245880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85005 -39.60183 -38.39026 -37.41515 -34.57939 -33.88650 -33.76802 -31.56082 -31.13078 -29.51237 -27.60367 -26.02748 -25.59302 -24.82135 -23.75935 -22.75593 -21.43051 -20.61464 -19.55617 -19.03941 -18.61918 -17.84843 -17.32420 -16.46413 -15.97640 -15.75621 -15.47728 -15.26244 -14.80851 -14.62749 -14.55194 -14.24915 -13.94549 -13.73854 -13.25450 -13.03962 -12.83692 -12.69352 -12.48369 -12.39121 -12.28517 -12.00963 -11.89111 -11.79448 -11.71448 -11.52480 -11.45464 -11.11602 -10.97377 -10.91825 -10.63724 -10.58950 -10.54939 -10.34275 -10.22378 -9.98277 -9.54232 -9.50199 -9.07479 -8.51022 -8.03700 -7.94353 -6.41603 -3.82225 2.57669 3.07066 3.16219 3.26741 3.34010 3.47204 3.90688 4.01439 4.05291 4.25130 4.26093 4.38601 4.41829 4.53092 4.60534 4.79840 4.96832 4.99296 5.05050 5.12405 5.25211 5.32461 5.37713 5.38495 5.42127 5.47588 5.52897 5.55193 5.55253 5.62012 5.69255 5.72125 5.76481 5.81158 5.82981 5.84049 5.94582 6.02781 6.05429 6.16326 6.25581 6.29809 6.47730 6.58858 7.09322 7.17863 7.51752 7.55557 8.06672 8.22147 8.62220 9.18720 9.54893 10.06889 10.76300 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.002248 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.951408 B =12451.550225 C =13653.867932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 N -0.711 5.711 4 C 0.525 3.475 5 O -0.538 6.538 6 C -0.132 4.132 7 C -0.081 4.081 8 C -0.164 4.164 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.118 4.118 13 C 0.036 3.964 14 N -0.482 5.482 15 C 0.034 3.966 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.057 0.943 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 20.709 3.992 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 N -0.362 5.362 4 C 0.311 3.689 5 O -0.415 6.415 6 C -0.154 4.154 7 C -0.118 4.118 8 C -0.164 4.164 9 C -0.203 4.203 10 C -0.189 4.189 11 C -0.111 4.111 12 C -0.157 4.157 13 C -0.091 4.091 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.101 4.101 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.236 0.764 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.622 20.895 5.165 24.461 hybrid contribution 0.154 -1.180 -0.914 1.500 sum -11.468 19.715 4.252 23.201 Atomic orbital electron populations 1.22202 0.93726 1.02460 1.03206 1.20997 0.93461 0.81296 0.95603 1.46141 1.52097 1.11808 1.26139 1.20385 0.79990 0.86985 0.81502 1.90649 1.37375 1.77555 1.35960 1.22616 0.98644 0.93196 1.00903 1.22400 0.94402 0.95842 0.99177 1.22171 0.97702 0.92906 1.03662 1.22802 1.01711 1.03670 0.92082 1.22791 1.02893 0.93507 0.99678 1.22365 0.93819 0.97350 0.97598 1.22673 0.99446 0.96927 0.96627 1.23207 0.99649 0.95263 0.91029 1.65198 1.30681 1.22780 1.01969 1.22068 0.97343 0.92534 0.97863 1.19682 0.87501 0.83259 0.86489 1.90509 1.62330 1.63653 1.29534 1.41864 1.22359 1.26692 1.29378 1.19734 0.98607 1.10421 1.13849 0.87903 1.25257 0.99721 0.97077 0.95983 1.69618 1.39870 1.24734 1.20195 0.85809 0.81171 0.78714 0.78715 1.19234 1.20793 1.20757 1.23463 0.92577 0.97809 0.96259 0.92708 0.91816 0.90134 0.76353 0.87076 0.89046 0.90475 0.88686 0.88597 0.88552 0.88653 0.91162 0.88246 0.90700 0.90879 0.88201 0.94340 0.93172 0.89297 0.77538 0.91961 0.92468 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.15 37.16 0.30 -1.40 16 2 C 0.17 2.04 1.01 -130.44 -0.13 1.91 16 3 N -0.71 -7.55 5.09 -46.33 -0.24 -7.79 16 4 C 0.53 5.97 6.53 -10.99 -0.07 5.90 16 5 O -0.54 -7.78 13.18 5.56 0.07 -7.70 16 6 C -0.13 -1.15 4.15 -90.85 -0.38 -1.53 16 7 C -0.08 -0.71 7.65 -26.13 -0.20 -0.91 16 8 C -0.16 -1.35 3.08 -154.80 -0.48 -1.82 16 9 C -0.17 -1.24 10.53 -26.94 -0.28 -1.53 16 10 C -0.15 -1.04 10.53 -26.94 -0.28 -1.32 16 11 C -0.07 -0.65 7.42 -26.14 -0.19 -0.85 16 12 C -0.12 -1.65 5.53 -25.35 -0.14 -1.79 16 13 C 0.04 0.59 5.80 -2.18 -0.01 0.58 16 14 N -0.48 -7.82 5.06 -231.27 -1.17 -8.99 16 15 C 0.03 0.59 5.30 -4.98 -0.03 0.56 16 16 C 0.45 10.45 7.58 -10.98 -0.08 10.36 16 17 O -0.58 -15.50 14.42 5.55 0.08 -15.42 16 18 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.03 0.33 5.70 -2.09 -0.01 0.32 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 31 H 0.40 3.57 8.27 -40.82 -0.34 3.24 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 1.05 7.43 -51.92 -0.39 0.67 16 41 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 42 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 43 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 44 H 0.04 0.61 7.83 -51.93 -0.41 0.20 16 45 H 0.05 0.80 7.88 -51.93 -0.41 0.40 16 46 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 50 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -32.26 399.05 -10.11 -42.37 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -8.29 Total: 13.05 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.23 Total: 0.56 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.74 Total: -54.91 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.15 Total: -23.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.26 -10.11 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.952 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds