Wall clock time and date at job start Tue Mar 31 2020 19:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 110.28434 * 2 1 4 4 C 1.34778 * 119.99796 * 59.29987 * 3 2 1 5 5 O 1.21277 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99754 * 179.97438 * 4 3 2 7 7 C 1.53890 * 113.58767 * 277.66461 * 6 4 3 8 8 C 1.53257 * 86.88363 * 220.42744 * 7 6 4 9 9 C 1.52463 * 128.58560 * 165.11106 * 8 7 6 10 10 C 1.52461 * 128.58661 * 245.05559 * 8 7 6 11 11 C 1.53255 * 87.69280 * 25.08135 * 8 7 6 12 12 C 1.54253 * 110.32487 * 122.12758 * 2 1 3 13 13 C 1.54385 * 105.05958 * 118.89858 * 12 2 1 14 14 N 1.48557 * 104.59458 * 23.85283 * 13 12 2 15 15 C 1.46897 * 111.00069 * 200.96402 * 14 13 12 16 16 C 1.50703 * 109.46737 * 290.12676 * 15 14 13 17 17 O 1.21291 * 119.99992 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00194 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99903 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00282 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46747 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.46900 * 120.00102 * 23 21 19 26 26 H 1.48500 * 109.46847 * 240.00163 * 23 21 19 27 27 C 1.48728 * 104.28595 * 320.57290 * 14 13 12 28 28 H 1.08998 * 109.46951 * 60.70150 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69797 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.70033 * 1 2 3 31 31 H 0.97001 * 119.99917 * 239.29738 * 3 2 1 32 32 H 1.09000 * 112.83027 * 48.88260 * 6 4 3 33 33 H 1.09001 * 113.64889 * 334.92579 * 7 6 4 34 34 H 1.09005 * 113.64939 * 105.93218 * 7 6 4 35 35 H 1.08997 * 117.51434 * 225.04840 * 9 8 7 36 36 H 1.09002 * 117.51202 * 10.15082 * 9 8 7 37 37 H 1.09007 * 117.51194 * 349.84981 * 10 8 7 38 38 H 1.09001 * 117.51144 * 134.94838 * 10 8 7 39 39 H 1.08996 * 113.64766 * 220.41335 * 11 8 7 40 40 H 1.09010 * 113.64122 * 89.41044 * 11 8 7 41 41 H 1.09001 * 110.32558 * 237.79378 * 12 2 1 42 42 H 1.09001 * 110.32826 * 0.02562 * 12 2 1 43 43 H 1.09003 * 110.40817 * 142.63159 * 13 12 2 44 44 H 1.09001 * 110.40554 * 264.95445 * 13 12 2 45 45 H 1.09000 * 109.47104 * 50.11796 * 15 14 13 46 46 H 1.08994 * 109.47568 * 170.12897 * 15 14 13 47 47 H 0.96996 * 119.99865 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00465 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.38814 * 280.63976 * 27 14 13 50 50 H 1.08999 * 110.50240 * 158.14590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0380 1.3742 0.0000 4 6 1.7126 2.2128 1.0036 5 8 0.9990 1.8300 1.9065 6 6 2.2355 3.6262 1.0039 7 6 3.6663 3.7533 1.5562 8 6 3.1925 5.0312 2.2572 9 6 3.8714 5.8072 3.3803 10 6 3.6411 6.4687 2.0187 11 6 1.7736 4.4535 2.2165 12 6 2.0659 -0.7693 1.2250 13 6 2.8808 -1.9415 0.6375 14 7 3.2695 -1.4834 -0.7212 15 6 3.6069 -2.6230 -1.5845 16 6 4.9012 -3.2393 -1.1197 17 8 5.4853 -2.7745 -0.1637 18 7 5.4098 -4.3069 -1.7664 19 6 6.5875 -4.8672 -1.3440 20 1 7.1076 -4.4533 -0.4927 21 6 7.1120 -5.9674 -2.0109 22 7 6.4795 -6.4707 -3.0470 23 14 8.7165 -6.7314 -1.4349 24 1 9.2252 -5.9845 -0.2565 25 1 8.4829 -8.1488 -1.0589 26 1 9.7164 -6.6683 -2.5310 27 6 2.0662 -0.7698 -1.2261 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 2.6084 1.6804 -0.7223 32 1 2.0885 4.1317 0.0495 33 1 3.9421 2.9539 2.2440 34 1 4.4179 3.9298 0.7867 35 1 3.2491 6.1371 4.2121 36 1 4.8932 5.5289 3.6385 37 1 4.5113 6.6255 1.3813 38 1 2.8671 7.2336 1.9550 39 1 1.0080 5.1912 1.9765 40 1 1.5227 3.8489 3.0882 41 1 2.7082 -0.1250 1.8254 42 1 1.2389 -1.1473 1.8261 43 1 3.7672 -2.1295 1.2434 44 1 2.2655 -2.8392 0.5765 45 1 2.8114 -3.3663 -1.5324 46 1 3.7167 -2.2797 -2.6131 47 1 4.9429 -4.6783 -2.5312 48 1 6.8455 -7.2390 -3.5125 49 1 1.3230 -1.4833 -1.5818 50 1 2.3394 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569647346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:37 Heat of formation + Delta-G solvation = -37.025208 kcal Electronic energy + Delta-G solvation = -29136.687024 eV Core-core repulsion = 25164.460851 eV Total energy + Delta-G solvation = -3972.226173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74246 -40.66761 -39.80874 -38.66413 -36.07112 -35.42420 -34.55874 -33.29868 -32.50145 -30.63349 -28.95778 -26.96560 -26.71991 -25.99487 -25.07983 -23.31112 -22.71740 -21.51171 -21.01667 -20.37245 -19.83572 -19.28075 -18.19545 -17.72056 -17.46080 -16.73361 -16.46906 -16.35318 -16.12943 -15.93588 -15.69181 -15.58067 -15.28467 -15.24557 -14.56265 -14.21810 -13.93904 -13.60805 -13.52940 -13.45669 -13.40412 -13.18526 -13.04354 -12.96087 -12.91918 -12.67400 -12.42604 -12.40427 -12.32089 -12.20460 -12.12568 -11.95097 -11.82184 -11.47989 -11.25181 -11.22263 -10.65194 -10.42487 -10.30021 -10.02295 -9.98585 -9.38214 -8.46495 -5.94626 1.35896 1.41070 1.54983 1.69045 2.06871 2.22888 2.28537 2.79914 2.85319 3.20231 3.32836 3.41274 3.46019 3.58881 3.68568 3.77791 3.90593 3.95563 4.01138 4.17897 4.23980 4.28903 4.40506 4.43160 4.45995 4.53634 4.64337 4.67736 4.76438 4.78063 4.79721 4.80682 4.82069 4.84746 4.88082 5.00293 5.06021 5.11133 5.13360 5.26948 5.29401 5.29897 5.37366 5.41334 5.64382 5.82899 5.88914 6.07712 6.61667 6.67576 7.14167 7.35814 7.57771 8.14279 8.71149 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.002248 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.951408 B =12451.550225 C =13653.867932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.176 3.824 3 N -0.705 5.705 4 C 0.521 3.479 5 O -0.573 6.573 6 C -0.123 4.123 7 C -0.082 4.082 8 C -0.173 4.173 9 C -0.175 4.175 10 C -0.135 4.135 11 C -0.075 4.075 12 C -0.110 4.110 13 C 0.040 3.960 14 N -0.502 5.502 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.575 5.575 19 C -0.329 4.329 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.033 3.967 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.412 0.588 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.078 0.922 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.885 21.880 2.046 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.089 3.911 3 N -0.356 5.356 4 C 0.309 3.691 5 O -0.453 6.453 6 C -0.144 4.144 7 C -0.120 4.120 8 C -0.174 4.174 9 C -0.212 4.212 10 C -0.172 4.172 11 C -0.113 4.113 12 C -0.149 4.149 13 C -0.088 4.088 14 N -0.226 5.226 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.094 4.094 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.249 0.751 32 H 0.157 0.843 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.477 22.076 3.180 25.557 hybrid contribution 0.410 -1.518 -0.246 1.591 sum -12.067 20.558 2.934 24.018 Atomic orbital electron populations 1.22122 0.92422 1.03045 1.03212 1.20946 0.94301 0.81607 0.94226 1.46103 1.51969 1.11243 1.26328 1.20873 0.79337 0.87988 0.80902 1.90638 1.39043 1.78372 1.37213 1.22672 0.98077 0.91521 1.02099 1.22341 0.94829 0.95642 0.99173 1.22154 0.96999 0.93531 1.04669 1.22889 1.01678 1.03951 0.92702 1.22888 1.03254 0.92383 0.98661 1.22294 0.94738 0.97436 0.96827 1.22565 0.98769 0.96074 0.97485 1.23032 0.98091 0.96497 0.91202 1.65119 1.33463 1.22364 1.01677 1.21944 0.94209 0.93349 0.98984 1.20796 0.88889 0.82168 0.85270 1.90491 1.64040 1.64560 1.31202 1.41926 1.22056 1.27464 1.29870 1.19643 1.00238 1.11869 1.14164 0.90589 1.26004 1.02583 0.96872 0.95862 1.69670 1.40960 1.24992 1.20510 0.84901 0.77474 0.77959 0.78190 1.20001 1.19656 1.19503 1.23561 0.91273 0.98057 0.96543 0.90808 0.90923 0.92008 0.75097 0.84289 0.91469 0.89297 0.88354 0.88726 0.87639 0.87379 0.89888 0.90711 0.92987 0.90542 0.92562 0.93740 0.91020 0.86537 0.76982 0.91341 0.90420 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.15 71.98 0.59 -2.32 16 2 C 0.18 3.87 1.01 4.50 0.00 3.88 16 3 N -0.70 -13.92 5.09 -418.88 -2.13 -16.05 16 4 C 0.52 11.56 6.53 87.66 0.57 12.13 16 5 O -0.57 -16.82 13.18 -3.02 -0.04 -16.86 16 6 C -0.12 -1.98 4.15 -10.94 -0.05 -2.03 16 7 C -0.08 -1.41 7.65 30.98 0.24 -1.17 16 8 C -0.17 -2.67 3.08 -52.37 -0.16 -2.83 16 9 C -0.18 -2.49 10.53 30.46 0.32 -2.17 16 10 C -0.14 -1.55 10.53 30.46 0.32 -1.23 16 11 C -0.08 -1.29 7.42 30.98 0.23 -1.06 16 12 C -0.11 -3.12 5.53 31.49 0.17 -2.95 16 13 C 0.04 1.33 5.80 86.45 0.50 1.83 16 14 N -0.50 -15.65 5.06 -885.59 -4.48 -20.13 16 15 C 0.05 1.55 5.30 85.56 0.45 2.01 16 16 C 0.44 20.94 7.58 87.66 0.66 21.60 16 17 O -0.62 -34.41 14.42 -3.07 -0.04 -34.46 16 18 N -0.58 -29.43 5.29 -306.98 -1.62 -31.06 16 19 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C 0.03 0.70 5.70 86.42 0.49 1.19 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.48 6.17 -2.39 -0.01 1.47 16 31 H 0.41 6.36 8.27 -92.71 -0.77 5.60 16 32 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.66 7.43 -2.38 -0.02 1.64 16 41 H 0.05 1.70 7.41 -2.39 -0.02 1.68 16 42 H 0.08 2.09 7.71 -2.39 -0.02 2.07 16 43 H 0.06 2.35 6.91 -2.39 -0.02 2.33 16 44 H 0.04 1.40 7.83 -2.39 -0.02 1.38 16 45 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 46 H 0.12 3.28 8.13 -2.39 -0.02 3.26 16 47 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.15 16 49 H 0.08 1.39 7.72 -2.39 -0.02 1.37 16 50 H 0.11 1.81 7.76 -2.39 -0.02 1.80 16 Total: -1.00 -72.42 399.05 -0.92 -73.34 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.54 Total: 40.59 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.63 Total: 8.65 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.95 Total: -116.48 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.08 Total: -51.32 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.42 -0.92 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.319 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds