Wall clock time and date at job start Tue Mar 31 2020 19:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38092 * 119.58413 * 2 1 4 4 C 1.38784 * 119.28833 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.75319 * 180.02562 * 4 3 2 6 6 C 1.38418 * 118.48420 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.43916 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47107 * 269.95330 * 7 6 4 9 9 O 1.21290 * 119.99795 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00530 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99515 * 0.02562 * 10 8 7 12 12 C 1.46493 * 120.00723 * 180.02562 * 10 8 7 13 13 C 1.52998 * 109.47423 * 89.99710 * 12 10 8 14 14 C 1.52991 * 109.47516 * 180.02562 * 13 12 10 15 15 N 1.46501 * 109.47563 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00345 * 270.00842 * 15 14 13 17 17 C 1.36940 * 119.99652 * 89.99989 * 15 14 13 18 18 H 1.08005 * 120.00075 * 20.36488 * 17 15 14 19 19 C 1.38811 * 119.99896 * 200.36988 * 17 15 14 20 20 N 1.31618 * 120.00368 * 14.98341 * 19 17 15 21 21 Si 1.86804 * 119.99895 * 194.99017 * 19 17 15 22 22 H 1.48492 * 109.47312 * 84.99916 * 21 19 17 23 23 H 1.48509 * 109.46960 * 204.99932 * 21 19 17 24 24 H 1.48497 * 109.46996 * 324.99599 * 21 19 17 25 25 C 1.38875 * 119.11601 * 359.97438 * 6 4 3 26 26 O 1.35676 * 119.68149 * 180.29749 * 25 6 4 27 27 N 1.31936 * 119.58282 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46353 * 270.01290 * 1 2 3 29 29 H 1.08988 * 109.47337 * 30.01565 * 1 2 3 30 30 H 1.09000 * 109.47099 * 150.02341 * 1 2 3 31 31 H 1.08003 * 120.35479 * 0.03021 * 3 2 1 32 32 H 1.09001 * 109.46700 * 90.00699 * 5 4 3 33 33 H 1.09004 * 109.47058 * 209.99852 * 5 4 3 34 34 H 1.08995 * 109.47754 * 329.99929 * 5 4 3 35 35 H 1.08992 * 109.47366 * 29.95173 * 7 6 4 36 36 H 1.08998 * 109.46859 * 149.95821 * 7 6 4 37 37 H 1.09004 * 109.46958 * 90.00022 * 11 10 8 38 38 H 1.08999 * 109.46700 * 209.99529 * 11 10 8 39 39 H 1.08998 * 109.47318 * 330.00138 * 11 10 8 40 40 H 1.08999 * 109.47621 * 210.00664 * 12 10 8 41 41 H 1.09003 * 109.47095 * 330.00048 * 12 10 8 42 42 H 1.09007 * 109.47327 * 300.00842 * 13 12 10 43 43 H 1.09003 * 109.46710 * 60.00102 * 13 12 10 44 44 H 1.09003 * 109.47209 * 300.00141 * 14 13 12 45 45 H 1.09003 * 109.47232 * 60.00196 * 14 13 12 46 46 H 1.08995 * 109.47494 * 95.08751 * 16 15 14 47 47 H 1.08997 * 109.46745 * 215.09370 * 16 15 14 48 48 H 1.09000 * 109.46605 * 335.08678 * 16 15 14 49 49 H 0.97002 * 120.00721 * 180.02562 * 20 19 17 50 50 H 0.96694 * 113.99914 * 269.72036 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0005 5 6 4.3539 2.4848 0.0000 6 6 4.2305 -0.0263 -0.0016 7 6 5.7363 -0.0855 -0.0016 8 6 6.2382 -0.1051 -1.4225 9 8 5.4506 -0.0736 -2.3443 10 7 7.5622 -0.1577 -1.6689 11 6 8.5135 -0.1962 -0.5554 12 6 8.0501 -0.1762 -3.0501 13 6 8.2774 1.2587 -3.5301 14 6 8.7864 1.2394 -4.9727 15 7 9.0033 2.6134 -5.4325 16 6 7.9164 3.3479 -6.0847 17 6 10.2222 3.2111 -5.2525 18 1 11.1012 2.6059 -5.0866 19 6 10.3278 4.5948 -5.2832 20 7 9.2469 5.3397 -5.1882 21 14 12.0043 5.3999 -5.4593 22 1 12.3650 5.4827 -6.8974 23 1 11.9603 6.7668 -4.8804 24 1 13.0202 4.5901 -4.7400 25 6 3.4803 -1.1950 -0.0016 26 8 4.1094 -2.3971 0.0035 27 7 2.1584 -1.1474 0.0005 28 1 -0.3632 0.0002 1.0277 29 1 -0.3633 0.8897 -0.5140 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6478 2.1357 0.0005 32 1 4.5417 2.7953 1.0279 33 1 5.3036 2.3374 -0.5143 34 1 3.7787 3.2555 -0.5130 35 1 6.1344 0.7895 0.5122 36 1 6.0644 -0.9891 0.5120 37 1 8.7085 -1.2327 -0.2799 38 1 9.4458 0.2810 -0.8574 39 1 8.0940 0.3341 0.2995 40 1 8.9891 -0.7278 -3.0964 41 1 7.3123 -0.6606 -3.6896 42 1 7.3383 1.8104 -3.4837 43 1 9.0152 1.7431 -2.8905 44 1 9.7253 0.6877 -5.0194 45 1 8.0482 0.7551 -5.6120 46 1 7.3940 3.9555 -5.3459 47 1 8.3284 3.9933 -6.8603 48 1 7.2183 2.6411 -6.5331 49 1 9.3206 6.3067 -5.2100 50 1 4.2910 -2.7496 -0.8783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570206455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:37 Heat of formation + Delta-G solvation = -49.937751 kcal Electronic energy + Delta-G solvation = -29403.910142 eV Core-core repulsion = 25431.124040 eV Total energy + Delta-G solvation = -3972.786103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97031 -40.66106 -38.27817 -37.95563 -36.70836 -35.81189 -34.10741 -32.96642 -32.21231 -30.99923 -28.73856 -28.16605 -27.81756 -27.43974 -26.06475 -24.06247 -23.47718 -22.07765 -21.82091 -20.12947 -19.35168 -18.76655 -18.30372 -18.16103 -17.34310 -16.75804 -16.65763 -16.49810 -15.96718 -15.81715 -15.30844 -15.18966 -14.82528 -14.74017 -14.47234 -14.24849 -14.09447 -14.04931 -13.87861 -13.79067 -13.27752 -13.25335 -13.19003 -13.09680 -12.87756 -12.82506 -12.71833 -12.55720 -12.54082 -12.51822 -12.44085 -12.26353 -12.02783 -11.86780 -11.41126 -10.99142 -10.64327 -10.47025 -10.38621 -9.68338 -9.63312 -8.81518 -7.82277 -5.28822 -0.04565 0.17244 1.46422 1.49072 1.56693 1.59393 2.04512 2.41503 2.51974 2.80900 3.31365 3.43059 3.63590 3.64792 3.69711 3.81213 3.87334 4.10979 4.23184 4.28029 4.36801 4.38467 4.41742 4.50496 4.55272 4.60347 4.63834 4.66652 4.72868 4.76965 4.79064 4.81332 4.83859 4.90277 4.96852 4.97660 5.08895 5.17801 5.25489 5.27137 5.29013 5.42966 5.58749 5.61721 5.63699 5.67329 6.31960 6.40019 6.49202 6.92703 7.13641 7.16380 7.86612 8.31807 9.22140 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002538 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.697640 B =11029.405274 C =11699.525257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 C -0.186 4.186 4 C -0.022 4.022 5 C -0.118 4.118 6 C -0.150 4.150 7 C -0.085 4.085 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.613 5.613 11 C 0.068 3.932 12 C 0.126 3.874 13 C -0.128 4.128 14 C 0.151 3.849 15 N -0.621 5.621 16 C 0.179 3.821 17 C -0.259 4.259 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.942 5.942 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.312 3.688 26 O -0.487 6.487 27 N -0.537 5.537 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.048 0.952 46 H -0.002 1.002 47 H 0.018 0.982 48 H 0.024 0.976 49 H 0.246 0.754 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -12.512 15.675 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.001 4.001 3 C -0.206 4.206 4 C -0.030 4.030 5 C -0.174 4.174 6 C -0.153 4.153 7 C -0.125 4.125 8 C 0.300 3.700 9 O -0.461 6.461 10 N -0.345 5.345 11 C -0.074 4.074 12 C 0.003 3.997 13 C -0.169 4.169 14 C 0.025 3.975 15 N -0.344 5.344 16 C 0.033 3.967 17 C -0.389 4.389 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.589 5.589 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.134 3.866 26 O -0.296 6.296 27 N -0.258 5.258 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.182 0.818 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.016 0.984 47 H 0.037 0.963 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.177 -13.110 15.779 23.362 hybrid contribution 1.231 1.458 -0.833 2.082 sum -9.946 -11.652 14.947 21.403 Atomic orbital electron populations 1.20821 0.86224 1.04397 1.04278 1.21582 0.98345 0.86964 0.93195 1.22141 0.93818 1.00355 1.04252 1.20423 0.94530 0.95314 0.92719 1.20898 0.99385 0.92963 1.04135 1.20304 0.96333 0.92877 1.05830 1.20561 0.90884 1.07324 0.93718 1.20960 0.82034 0.75384 0.91642 1.90704 1.56104 1.51488 1.47849 1.48031 1.06059 1.72332 1.08105 1.22128 0.93084 1.03679 0.88519 1.21413 1.00346 0.96081 0.81907 1.22278 0.99061 0.96390 0.99198 1.20925 0.98861 0.85336 0.92386 1.44274 1.10752 1.12251 1.67160 1.20493 0.88906 0.92798 0.94456 1.19585 0.86289 0.89868 1.43125 0.90507 1.25798 1.00413 0.97262 1.01879 1.70276 1.28785 1.03868 1.55978 0.85229 0.79933 0.77305 0.77663 1.21404 1.22380 1.18955 1.19021 0.86894 0.85411 0.95322 1.84628 1.76474 1.33316 1.35153 1.66998 1.09913 1.32014 1.16829 0.88800 0.88405 0.90923 0.81819 0.87702 0.92596 0.90013 0.85803 0.85336 0.89876 0.90559 0.89390 0.87907 0.91400 0.96190 0.93587 0.92113 0.93331 0.98368 0.96283 0.95769 0.94437 0.72972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.17 71.24 0.72 -0.74 16 2 C 0.14 3.08 6.78 42.51 0.29 3.37 16 3 C -0.19 -3.88 9.44 22.37 0.21 -3.67 16 4 C -0.02 -0.51 5.91 -19.69 -0.12 -0.63 16 5 C -0.12 -2.31 9.28 71.24 0.66 -1.65 16 6 C -0.15 -3.68 4.40 -19.67 -0.09 -3.77 16 7 C -0.09 -1.71 3.51 29.10 0.10 -1.61 16 8 C 0.51 13.85 7.36 87.66 0.64 14.49 16 9 O -0.58 -21.15 15.61 -3.06 -0.05 -21.20 16 10 N -0.61 -14.81 2.87 -846.75 -2.43 -17.24 16 11 C 0.07 1.03 10.24 127.77 1.31 2.34 16 12 C 0.13 3.50 5.41 86.38 0.47 3.97 16 13 C -0.13 -4.79 5.86 30.59 0.18 -4.61 16 14 C 0.15 6.14 5.71 86.38 0.49 6.64 16 15 N -0.62 -32.09 2.93 -726.95 -2.13 -34.22 16 16 C 0.18 9.41 9.02 127.77 1.15 10.57 16 17 C -0.26 -14.21 9.68 84.03 0.81 -13.40 16 18 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 19 C -0.06 -3.33 5.06 84.86 0.43 -2.90 16 20 N -0.94 -56.80 10.67 21.65 0.23 -56.57 16 21 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.31 8.34 7.72 84.78 0.65 8.99 16 26 O -0.49 -11.28 12.62 -89.94 -1.14 -12.42 16 27 N -0.54 -14.84 10.30 -296.97 -3.06 -17.89 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.31 6.55 -2.38 -0.02 1.29 16 34 H 0.08 1.52 8.10 -2.39 -0.02 1.51 16 35 H 0.12 1.98 6.07 -2.39 -0.01 1.97 16 36 H 0.13 2.04 7.51 -2.39 -0.02 2.03 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.08 1.23 8.07 -2.39 -0.02 1.21 16 39 H 0.09 1.02 6.44 -2.39 -0.02 1.00 16 40 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 41 H 0.07 2.06 7.42 -2.39 -0.02 2.04 16 42 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 45 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 46 H 0.00 -0.12 7.40 -2.39 -0.02 -0.13 16 47 H 0.02 1.05 7.21 -2.39 -0.02 1.03 16 48 H 0.02 1.11 7.83 -2.39 -0.02 1.09 16 49 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 50 H 0.41 7.17 9.06 -74.06 -0.67 6.50 16 Total: -1.00 -79.22 408.25 1.65 -77.57 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.27 Total: 17.60 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 7.93 Total: 17.39 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -7.39 Total: -125.93 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.18 Total: -33.62 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.22 1.65 -77.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570206455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.629 kcal (2) G-P(sol) polarization free energy of solvation -79.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds