Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37844 * 125.89616 * 2 1 4 4 C 1.47114 * 127.02175 * 0.02562 * 3 2 1 5 5 O 1.21549 * 120.00343 * 359.97438 * 4 3 2 6 6 O 1.34789 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.46737 * 105.95080 * 179.97438 * 3 2 1 8 8 C 1.34428 * 106.37592 * 0.25884 * 7 3 2 9 9 C 1.50702 * 125.46125 * 179.73452 * 8 7 3 10 10 N 1.46898 * 109.47256 * 95.02275 * 9 8 7 11 11 C 1.46905 * 111.00186 * 294.31123 * 10 9 8 12 12 C 1.53240 * 109.33942 * 172.74555 * 11 10 9 13 13 H 1.09004 * 109.62309 * 294.11468 * 12 11 10 14 14 C 1.52998 * 109.78669 * 173.63300 * 12 11 10 15 15 N 1.47075 * 108.52305 * 53.82208 * 12 11 10 16 16 C 1.36948 * 120.87774 * 128.83798 * 15 12 11 17 17 H 1.07997 * 119.99908 * 331.85418 * 16 15 12 18 18 C 1.38807 * 119.99823 * 151.85802 * 16 15 12 19 19 N 1.31619 * 120.00347 * 342.76340 * 18 16 15 20 20 Si 1.86793 * 119.99931 * 162.76620 * 18 16 15 21 21 H 1.48502 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47342 * 119.99776 * 20 18 16 23 23 H 1.48500 * 109.47564 * 239.99983 * 20 18 16 24 24 C 1.47072 * 118.24157 * 308.81855 * 15 12 11 25 25 H 1.09000 * 109.63307 * 170.89320 * 24 15 12 26 26 C 1.53008 * 109.62579 * 291.47331 * 24 15 12 27 27 C 1.46897 * 111.00411 * 169.99976 * 10 9 8 28 28 N 1.34624 * 125.89558 * 179.97438 * 2 1 3 29 29 C 1.46501 * 124.81242 * 0.05779 * 28 2 1 30 30 H 1.08999 * 109.46891 * 90.02698 * 1 2 3 31 31 H 1.09001 * 109.46703 * 210.03029 * 1 2 3 32 32 H 1.09000 * 109.46761 * 330.02275 * 1 2 3 33 33 H 0.96692 * 116.99906 * 179.97438 * 6 4 3 34 34 H 1.08001 * 126.81156 * 179.97438 * 7 3 2 35 35 H 1.08992 * 109.47767 * 215.02904 * 9 8 7 36 36 H 1.09010 * 109.46814 * 335.02892 * 9 8 7 37 37 H 1.08997 * 109.48838 * 292.69947 * 11 10 9 38 38 H 1.08999 * 109.49561 * 52.78265 * 11 10 9 39 39 H 1.09005 * 109.46816 * 296.61501 * 14 12 11 40 40 H 1.08997 * 109.47404 * 56.61932 * 14 12 11 41 41 H 1.09002 * 109.47034 * 176.61721 * 14 12 11 42 42 H 0.96995 * 120.00343 * 175.11529 * 19 18 16 43 43 H 1.09004 * 109.46650 * 179.02594 * 26 24 15 44 44 H 1.08995 * 109.47009 * 299.02396 * 26 24 15 45 45 H 1.08992 * 109.47271 * 59.03266 * 26 24 15 46 46 H 1.08998 * 109.49293 * 307.22322 * 27 10 9 47 47 H 1.09004 * 109.48445 * 67.27110 * 27 10 9 48 48 H 1.09002 * 109.46993 * 89.96946 * 29 28 2 49 49 H 1.08990 * 109.47136 * 209.97284 * 29 28 2 50 50 H 1.09003 * 109.46866 * 329.98005 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3153 1.1167 0.0000 4 6 1.8831 2.5229 0.0005 5 8 0.6984 2.7947 0.0006 6 8 2.8010 3.5100 0.0010 7 6 3.6946 0.6161 0.0006 8 6 3.6109 -0.7256 -0.0049 9 6 4.7816 -1.6746 -0.0121 10 7 5.0894 -2.0830 1.3650 11 6 5.5607 -0.9411 2.1600 12 6 5.6968 -1.3652 3.6262 13 1 4.7123 -1.5958 4.0335 14 6 6.3358 -0.2347 4.4352 15 7 6.5501 -2.5615 3.6893 16 6 7.6236 -2.6152 4.5379 17 1 8.1342 -1.7065 4.8208 18 6 8.0554 -3.8374 5.0343 19 7 7.2630 -4.8869 4.9800 20 14 9.7611 -3.9927 5.7796 21 1 10.4486 -2.6777 5.7209 22 1 9.6454 -4.4285 7.1946 23 1 10.5459 -4.9954 5.0155 24 6 6.2197 -3.6987 2.8172 25 1 7.0224 -4.4352 2.8558 26 6 4.9084 -4.3372 3.2799 27 6 6.0630 -3.1829 1.3828 28 7 2.2964 -1.0906 0.0005 29 6 1.8124 -2.4733 -0.0001 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5143 32 1 -0.3633 0.8902 0.5135 33 1 2.4690 4.4181 0.0009 34 1 4.5979 1.2081 0.0004 35 1 4.5324 -2.5545 -0.6050 36 1 5.6494 -1.1777 -0.4462 37 1 6.5298 -0.6122 1.7850 38 1 4.8439 -0.1236 2.0828 39 1 7.3465 -0.0529 4.0697 40 1 5.7410 0.6720 4.3252 41 1 6.3753 -0.5180 5.4870 42 1 7.5891 -5.7560 5.2613 43 1 4.6571 -5.1688 2.6214 44 1 5.0227 -4.7033 4.3001 45 1 4.1114 -3.5945 3.2474 46 1 5.7105 -3.9911 0.7419 47 1 7.0250 -2.8228 1.0182 48 1 1.6926 -2.8159 -1.0279 49 1 2.5321 -3.1104 0.5138 50 1 0.8520 -2.5223 0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599986380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = -12.004279 kcal Electronic energy + Delta-G solvation = -30714.479059 eV Core-core repulsion = 26743.337874 eV Total energy + Delta-G solvation = -3971.141184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.54410 -39.60478 -38.45077 -35.95664 -34.96249 -32.93321 -32.50266 -32.14918 -30.97254 -28.37336 -27.45011 -27.07906 -26.18308 -25.03096 -23.96704 -22.85232 -21.72584 -20.75825 -20.45458 -18.63429 -18.53734 -17.85918 -16.60201 -16.35950 -15.88537 -15.49297 -15.28430 -15.12054 -14.63987 -14.50819 -14.10766 -13.87042 -13.63743 -13.32806 -13.23000 -13.16491 -12.99682 -12.87083 -12.43643 -12.21460 -12.14599 -11.98909 -11.82878 -11.58699 -11.52456 -11.46654 -11.09772 -10.91678 -10.86109 -10.60853 -10.48978 -10.43383 -10.42291 -10.02088 -9.91703 -9.48125 -9.21395 -8.67227 -8.46508 -8.11396 -7.79368 -6.61767 -5.72897 -3.18197 1.46729 2.31245 2.65365 3.31098 3.37687 3.39980 3.46963 3.48101 4.42308 4.52873 4.58832 4.75115 4.78447 5.01678 5.05221 5.24144 5.31746 5.36075 5.40862 5.46656 5.52596 5.59709 5.64130 5.82234 5.84463 5.87095 5.94825 6.08474 6.19504 6.19846 6.22864 6.34816 6.38288 6.45520 6.55947 6.63262 6.73963 6.82397 6.98067 7.02777 7.04206 7.08389 7.15898 7.24897 7.49253 7.54670 7.73633 7.83630 7.96396 8.06447 8.47516 9.26282 9.88269 10.46918 11.32052 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.003159 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.199472 B = 8862.426783 C = 9676.026178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.117 3.883 3 C -0.237 4.237 4 C 0.561 3.439 5 O -0.538 6.538 6 O -0.513 6.513 7 C -0.140 4.140 8 C 0.034 3.966 9 C 0.116 3.884 10 N -0.527 5.527 11 C 0.048 3.952 12 C 0.173 3.827 13 H 0.030 0.970 14 C -0.137 4.137 15 N -0.585 5.585 16 C -0.245 4.245 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.200 3.800 25 H 0.091 0.909 26 C -0.135 4.135 27 C 0.041 3.959 28 N -0.420 5.420 29 C 0.064 3.936 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.407 0.593 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.060 0.940 42 H 0.250 0.750 43 H 0.018 0.982 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 7.539 -12.652 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.003 4.003 3 C -0.245 4.245 4 C 0.409 3.591 5 O -0.430 6.430 6 O -0.324 6.324 7 C -0.163 4.163 8 C -0.074 4.074 9 C -0.012 4.012 10 N -0.251 5.251 11 C -0.081 4.081 12 C 0.067 3.933 13 H 0.047 0.953 14 C -0.195 4.195 15 N -0.308 5.308 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.542 5.542 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.093 3.907 25 H 0.109 0.891 26 C -0.194 4.194 27 C -0.087 4.087 28 N -0.094 5.094 29 C -0.078 4.078 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.264 0.736 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.044 0.956 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.303 6.513 -12.297 17.927 hybrid contribution 1.455 0.630 -0.020 1.585 sum -9.848 7.143 -12.316 17.312 Atomic orbital electron populations 1.20581 0.87028 1.04273 1.03288 1.20470 0.93436 0.85044 1.01312 1.19135 0.93805 0.88316 1.23272 1.19835 0.82681 0.85391 0.71213 1.90826 1.18473 1.84702 1.49023 1.84617 1.42273 1.19283 1.86197 1.21778 0.95610 0.92368 1.06576 1.20144 0.83902 0.94258 1.09093 1.20581 0.92452 0.95992 0.92214 1.61975 1.45127 1.09282 1.08728 1.22707 0.97334 0.92065 0.96015 1.20438 0.93820 0.88203 0.90877 0.95255 1.21787 1.00167 0.96527 1.01013 1.44280 1.30121 1.12299 1.44065 1.19253 1.04323 0.93491 1.20398 0.91216 1.24978 0.98413 0.97424 0.98813 1.70063 1.32951 0.99543 1.51594 0.86358 0.85094 0.77542 0.78570 1.20444 1.21911 1.21805 1.20331 0.96792 0.89524 0.84015 0.89133 1.21967 0.97644 0.97490 1.02337 1.22887 0.92088 0.92284 1.01491 1.43409 1.05518 1.06249 1.54237 1.22189 1.02221 0.80102 1.03254 0.90416 0.91403 0.88385 0.73560 0.83514 0.90589 0.92928 0.95423 0.91457 0.92777 0.94224 0.92119 0.94001 0.96294 0.90615 0.94939 0.92308 0.95604 0.90841 0.88024 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.54 36.01 0.34 -0.59 16 2 C 0.12 1.46 6.93 -81.51 -0.56 0.90 16 3 C -0.24 -3.29 6.33 -103.01 -0.65 -3.94 16 4 C 0.56 7.58 8.32 34.33 0.29 7.86 16 5 O -0.54 -8.02 15.66 -19.30 -0.30 -8.32 16 6 O -0.51 -5.59 13.33 -40.73 -0.54 -6.13 16 7 C -0.14 -1.92 9.63 -37.50 -0.36 -2.28 16 8 C 0.03 0.45 5.61 -81.89 -0.46 0.00 16 9 C 0.12 1.55 4.78 -4.98 -0.02 1.52 16 10 N -0.53 -8.62 4.12 -235.76 -0.97 -9.60 16 11 C 0.05 0.85 4.75 -3.70 -0.02 0.84 16 12 C 0.17 3.59 3.24 -67.49 -0.22 3.37 16 13 H 0.03 0.67 7.60 -51.93 -0.39 0.27 16 14 C -0.14 -2.61 7.96 37.16 0.30 -2.31 16 15 N -0.58 -13.85 2.72 -157.01 -0.43 -14.28 16 16 C -0.25 -6.39 8.71 -15.06 -0.13 -6.52 16 17 H 0.07 1.81 6.17 -52.49 -0.32 1.48 16 18 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 19 N -0.90 -24.65 9.81 55.49 0.54 -24.10 16 20 Si 0.89 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.20 4.45 2.35 -67.49 -0.16 4.29 16 25 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 26 C -0.14 -2.93 8.98 37.16 0.33 -2.59 16 27 C 0.04 0.75 5.01 -3.70 -0.02 0.73 16 28 N -0.42 -5.05 3.08 -115.00 -0.35 -5.41 16 29 C 0.06 0.57 10.44 59.85 0.62 1.20 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.54 6.93 -51.93 -0.36 0.18 16 32 H 0.10 1.10 6.51 -51.93 -0.34 0.76 16 33 H 0.41 2.43 9.11 45.56 0.42 2.84 16 34 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 36 H 0.05 0.69 8.12 -51.92 -0.42 0.27 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.14 6.13 -51.93 -0.32 0.82 16 39 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.23 7.79 -51.93 -0.40 0.82 16 42 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 1.90 6.77 -51.93 -0.35 1.55 16 45 H 0.03 0.68 7.06 -51.93 -0.37 0.31 16 46 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.10 1.04 7.62 -51.93 -0.40 0.65 16 50 H 0.08 0.63 6.88 -51.93 -0.36 0.27 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -31.03 388.30 -9.27 -40.30 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.23 Total: 3.09 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.81 Total: 2.43 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -1.21 Total: -53.39 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.85 Total: -14.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.03 -9.27 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.296 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds