Wall clock time and date at job start Tue Mar 31 2020 18:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37844 * 125.89616 * 2 1 4 4 C 1.47114 * 127.02175 * 0.02562 * 3 2 1 5 5 O 1.21549 * 120.00343 * 359.97438 * 4 3 2 6 6 O 1.34789 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.46737 * 105.95080 * 179.97438 * 3 2 1 8 8 C 1.34428 * 106.37592 * 0.25884 * 7 3 2 9 9 C 1.50702 * 125.46125 * 179.73452 * 8 7 3 10 10 N 1.46898 * 109.47256 * 95.02275 * 9 8 7 11 11 C 1.46905 * 111.00186 * 294.31123 * 10 9 8 12 12 C 1.53240 * 109.33942 * 172.74555 * 11 10 9 13 13 H 1.09004 * 109.62309 * 294.11468 * 12 11 10 14 14 C 1.52998 * 109.78669 * 173.63300 * 12 11 10 15 15 N 1.47075 * 108.52305 * 53.82208 * 12 11 10 16 16 C 1.36948 * 120.87774 * 128.83798 * 15 12 11 17 17 H 1.07997 * 119.99908 * 331.85418 * 16 15 12 18 18 C 1.38807 * 119.99823 * 151.85802 * 16 15 12 19 19 N 1.31619 * 120.00347 * 342.76340 * 18 16 15 20 20 Si 1.86793 * 119.99931 * 162.76620 * 18 16 15 21 21 H 1.48502 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47342 * 119.99776 * 20 18 16 23 23 H 1.48500 * 109.47564 * 239.99983 * 20 18 16 24 24 C 1.47072 * 118.24157 * 308.81855 * 15 12 11 25 25 H 1.09000 * 109.63307 * 170.89320 * 24 15 12 26 26 C 1.53008 * 109.62579 * 291.47331 * 24 15 12 27 27 C 1.46897 * 111.00411 * 169.99976 * 10 9 8 28 28 N 1.34624 * 125.89558 * 179.97438 * 2 1 3 29 29 C 1.46501 * 124.81242 * 0.05779 * 28 2 1 30 30 H 1.08999 * 109.46891 * 90.02698 * 1 2 3 31 31 H 1.09001 * 109.46703 * 210.03029 * 1 2 3 32 32 H 1.09000 * 109.46761 * 330.02275 * 1 2 3 33 33 H 0.96692 * 116.99906 * 179.97438 * 6 4 3 34 34 H 1.08001 * 126.81156 * 179.97438 * 7 3 2 35 35 H 1.08992 * 109.47767 * 215.02904 * 9 8 7 36 36 H 1.09010 * 109.46814 * 335.02892 * 9 8 7 37 37 H 1.08997 * 109.48838 * 292.69947 * 11 10 9 38 38 H 1.08999 * 109.49561 * 52.78265 * 11 10 9 39 39 H 1.09005 * 109.46816 * 296.61501 * 14 12 11 40 40 H 1.08997 * 109.47404 * 56.61932 * 14 12 11 41 41 H 1.09002 * 109.47034 * 176.61721 * 14 12 11 42 42 H 0.96995 * 120.00343 * 175.11529 * 19 18 16 43 43 H 1.09004 * 109.46650 * 179.02594 * 26 24 15 44 44 H 1.08995 * 109.47009 * 299.02396 * 26 24 15 45 45 H 1.08992 * 109.47271 * 59.03266 * 26 24 15 46 46 H 1.08998 * 109.49293 * 307.22322 * 27 10 9 47 47 H 1.09004 * 109.48445 * 67.27110 * 27 10 9 48 48 H 1.09002 * 109.46993 * 89.96946 * 29 28 2 49 49 H 1.08990 * 109.47136 * 209.97284 * 29 28 2 50 50 H 1.09003 * 109.46866 * 329.98005 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3153 1.1167 0.0000 4 6 1.8831 2.5229 0.0005 5 8 0.6984 2.7947 0.0006 6 8 2.8010 3.5100 0.0010 7 6 3.6946 0.6161 0.0006 8 6 3.6109 -0.7256 -0.0049 9 6 4.7816 -1.6746 -0.0121 10 7 5.0894 -2.0830 1.3650 11 6 5.5607 -0.9411 2.1600 12 6 5.6968 -1.3652 3.6262 13 1 4.7123 -1.5958 4.0335 14 6 6.3358 -0.2347 4.4352 15 7 6.5501 -2.5615 3.6893 16 6 7.6236 -2.6152 4.5379 17 1 8.1342 -1.7065 4.8208 18 6 8.0554 -3.8374 5.0343 19 7 7.2630 -4.8869 4.9800 20 14 9.7611 -3.9927 5.7796 21 1 10.4486 -2.6777 5.7209 22 1 9.6454 -4.4285 7.1946 23 1 10.5459 -4.9954 5.0155 24 6 6.2197 -3.6987 2.8172 25 1 7.0224 -4.4352 2.8558 26 6 4.9084 -4.3372 3.2799 27 6 6.0630 -3.1829 1.3828 28 7 2.2964 -1.0906 0.0005 29 6 1.8124 -2.4733 -0.0001 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5143 32 1 -0.3633 0.8902 0.5135 33 1 2.4690 4.4181 0.0009 34 1 4.5979 1.2081 0.0004 35 1 4.5324 -2.5545 -0.6050 36 1 5.6494 -1.1777 -0.4462 37 1 6.5298 -0.6122 1.7850 38 1 4.8439 -0.1236 2.0828 39 1 7.3465 -0.0529 4.0697 40 1 5.7410 0.6720 4.3252 41 1 6.3753 -0.5180 5.4870 42 1 7.5891 -5.7560 5.2613 43 1 4.6571 -5.1688 2.6214 44 1 5.0227 -4.7033 4.3001 45 1 4.1114 -3.5945 3.2474 46 1 5.7105 -3.9911 0.7419 47 1 7.0250 -2.8228 1.0182 48 1 1.6926 -2.8159 -1.0279 49 1 2.5321 -3.1104 0.5138 50 1 0.8520 -2.5223 0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599986380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:26 Heat of formation + Delta-G solvation = -30.989391 kcal Electronic energy + Delta-G solvation = -30715.302315 eV Core-core repulsion = 26743.337874 eV Total energy + Delta-G solvation = -3971.964440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.48255 -40.58711 -39.96515 -36.91295 -36.48044 -34.24467 -33.80270 -33.50761 -32.36376 -29.89792 -28.80789 -27.94868 -27.65607 -26.31517 -25.64875 -23.98666 -22.99513 -22.35310 -21.45303 -20.30634 -19.54161 -18.81474 -18.02718 -17.64337 -17.06783 -16.82998 -16.37753 -16.28997 -15.93731 -15.84953 -15.65796 -15.37195 -14.97968 -14.70684 -14.56679 -14.17952 -13.93909 -13.83500 -13.62562 -13.45891 -13.32955 -13.19148 -13.06210 -12.87107 -12.80377 -12.76379 -12.63129 -12.41346 -12.32400 -12.21174 -12.15458 -12.13439 -11.87168 -11.60918 -11.45709 -11.22258 -10.95600 -10.43467 -9.61019 -9.27420 -8.99655 -8.51955 -7.73090 -5.20106 0.51159 1.30932 1.46939 1.51166 1.58910 1.80787 2.31850 2.54759 2.57087 3.14754 3.38264 3.64746 3.72674 3.79260 4.01092 4.16958 4.26808 4.29658 4.36181 4.46014 4.52395 4.60100 4.62389 4.63379 4.67318 4.71629 4.74291 4.79720 4.83381 4.86707 4.92945 4.93409 5.02251 5.07809 5.12136 5.27034 5.29191 5.35152 5.42106 5.54872 5.71474 5.73227 5.77630 5.80771 6.05011 6.10613 6.22285 6.28112 6.33811 6.51495 7.19908 7.28628 7.98206 8.51672 9.28639 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.003159 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.199472 B = 8862.426783 C = 9676.026178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.119 3.881 3 C -0.267 4.267 4 C 0.561 3.439 5 O -0.560 6.560 6 O -0.512 6.512 7 C -0.148 4.148 8 C 0.025 3.975 9 C 0.123 3.877 10 N -0.528 5.528 11 C 0.064 3.936 12 C 0.168 3.832 13 H 0.010 0.990 14 C -0.129 4.129 15 N -0.599 5.599 16 C -0.248 4.248 17 H 0.068 0.932 18 C -0.046 4.046 19 N -0.919 5.919 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.299 1.299 23 H -0.293 1.293 24 C 0.196 3.804 25 H 0.055 0.945 26 C -0.117 4.117 27 C 0.056 3.944 28 N -0.419 5.419 29 C 0.058 3.942 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.427 0.573 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.244 0.756 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 7.999 -14.340 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.002 4.002 3 C -0.275 4.275 4 C 0.409 3.591 5 O -0.454 6.454 6 O -0.325 6.325 7 C -0.172 4.172 8 C -0.083 4.083 9 C -0.005 4.005 10 N -0.252 5.252 11 C -0.065 4.065 12 C 0.062 3.938 13 H 0.027 0.973 14 C -0.187 4.187 15 N -0.323 5.323 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.242 4.242 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.227 1.227 23 H -0.220 1.220 24 C 0.090 3.910 25 H 0.073 0.927 26 C -0.176 4.176 27 C -0.073 4.073 28 N -0.093 5.093 29 C -0.082 4.082 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.287 0.713 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.103 0.897 47 H 0.036 0.964 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.150 7.003 -14.004 19.818 hybrid contribution 1.661 0.543 0.499 1.817 sum -10.489 7.546 -13.504 18.691 Atomic orbital electron populations 1.20619 0.85309 1.04588 1.04275 1.20881 0.94549 0.84867 0.99886 1.19413 0.94291 0.89025 1.24795 1.19873 0.82561 0.85818 0.70805 1.90810 1.19223 1.85093 1.50254 1.84572 1.41842 1.20441 1.85655 1.21890 0.95760 0.92810 1.06731 1.20089 0.84492 0.94027 1.09721 1.20575 0.92715 0.97024 0.90205 1.61889 1.44025 1.08480 1.10826 1.22436 0.97423 0.92682 0.94007 1.20575 0.92348 0.87634 0.93230 0.97259 1.21695 1.00337 0.97196 0.99437 1.44521 1.30185 1.13537 1.44024 1.19484 1.04937 0.93356 1.20093 0.91444 1.25581 1.01095 0.97494 0.99983 1.70211 1.33902 0.99508 1.52918 0.85473 0.81881 0.77422 0.77207 1.19720 1.22667 1.22033 1.20276 0.95587 0.88738 0.86428 0.92737 1.21724 0.97511 0.97998 1.00331 1.22590 0.92462 0.93575 0.98692 1.43615 1.05046 1.07263 1.53350 1.22418 1.02572 0.78245 1.04974 0.89004 0.89212 0.89864 0.71253 0.83447 0.88466 0.92369 0.95950 0.90343 0.93233 0.91283 0.94028 0.94675 0.94195 0.94596 0.94678 0.89673 0.96428 0.88421 0.89070 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.54 71.24 0.68 -0.90 16 2 C 0.12 2.72 6.93 42.04 0.29 3.01 16 3 C -0.27 -7.03 6.33 -18.82 -0.12 -7.15 16 4 C 0.56 14.57 8.32 70.15 0.58 15.15 16 5 O -0.56 -16.23 15.66 19.68 0.31 -15.92 16 6 O -0.51 -10.49 13.33 -57.00 -0.76 -11.25 16 7 C -0.15 -3.81 9.63 23.62 0.23 -3.58 16 8 C 0.03 0.61 5.61 40.97 0.23 0.84 16 9 C 0.12 2.91 4.78 85.56 0.41 3.32 16 10 N -0.53 -16.17 4.12 -899.82 -3.71 -19.88 16 11 C 0.06 2.17 4.75 86.38 0.41 2.58 16 12 C 0.17 6.90 3.24 44.96 0.15 7.05 16 13 H 0.01 0.44 7.60 -2.39 -0.02 0.42 16 14 C -0.13 -4.83 7.96 71.98 0.57 -4.26 16 15 N -0.60 -28.62 2.72 -650.66 -1.77 -30.39 16 16 C -0.25 -13.13 8.71 84.03 0.73 -12.40 16 17 H 0.07 3.53 6.17 -2.91 -0.02 3.51 16 18 C -0.05 -2.48 4.91 84.86 0.42 -2.06 16 19 N -0.92 -51.89 9.81 21.65 0.21 -51.68 16 20 Si 0.95 44.37 29.59 68.60 2.03 46.40 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.20 8.72 2.35 44.96 0.11 8.83 16 25 H 0.05 2.83 6.25 -2.39 -0.01 2.81 16 26 C -0.12 -5.03 8.98 71.98 0.65 -4.38 16 27 C 0.06 1.92 5.01 86.38 0.43 2.35 16 28 N -0.42 -8.92 3.08 -517.75 -1.60 -10.52 16 29 C 0.06 0.84 10.44 127.77 1.33 2.18 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.14 6.93 -2.39 -0.02 1.12 16 32 H 0.08 1.75 6.51 -2.39 -0.02 1.73 16 33 H 0.43 4.47 9.11 -74.06 -0.67 3.79 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.10 1.92 7.67 -2.39 -0.02 1.91 16 36 H 0.06 1.36 8.12 -2.38 -0.02 1.34 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 2.51 6.13 -2.39 -0.01 2.50 16 39 H 0.05 1.88 7.32 -2.38 -0.02 1.87 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.68 7.79 -2.39 -0.02 1.66 16 42 H 0.24 13.52 8.32 -92.71 -0.77 12.75 16 43 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.03 1.82 6.77 -2.39 -0.02 1.81 16 45 H 0.03 1.45 7.06 -2.39 -0.02 1.44 16 46 H 0.09 2.50 7.99 -2.39 -0.02 2.48 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.09 1.57 7.62 -2.39 -0.02 1.55 16 50 H 0.10 1.14 6.88 -2.39 -0.02 1.12 16 Total: -1.00 -68.10 388.30 2.09 -66.01 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.28 Total: 16.65 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 7.10 Total: 10.57 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -6.87 Total: -112.47 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.45 Total: -27.17 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.10 2.09 -66.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.019 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds