Wall clock time and date at job start Tue Mar 31 2020 18:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37846 * 125.89902 * 2 1 4 4 C 1.47114 * 127.01848 * 359.96424 * 3 2 1 5 5 O 1.21550 * 120.00479 * 0.02562 * 4 3 2 6 6 O 1.34787 * 119.99437 * 180.02562 * 4 3 2 7 7 C 1.46738 * 105.95389 * 179.97438 * 3 2 1 8 8 C 1.34428 * 106.37456 * 359.97438 * 7 3 2 9 9 C 1.50704 * 125.45910 * 179.97438 * 8 7 3 10 10 N 1.46894 * 109.47160 * 95.02780 * 9 8 7 11 11 C 1.46898 * 111.00041 * 45.69838 * 10 9 8 12 12 C 1.52789 * 109.41936 * 187.11714 * 11 10 9 13 13 H 1.08993 * 109.46303 * 66.18200 * 12 11 10 14 14 C 1.52999 * 109.55399 * 186.61127 * 12 11 10 15 15 N 1.47085 * 108.76646 * 306.42172 * 12 11 10 16 16 C 1.36933 * 120.88120 * 231.12691 * 15 12 11 17 17 H 1.08003 * 119.99979 * 128.20248 * 16 15 12 18 18 C 1.38808 * 120.00343 * 308.20438 * 16 15 12 19 19 N 1.31620 * 119.99747 * 338.25040 * 18 16 15 20 20 Si 1.86795 * 120.00346 * 158.24906 * 18 16 15 21 21 H 1.48499 * 109.47312 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47144 * 300.00018 * 20 18 16 23 23 H 1.48500 * 109.47262 * 60.00206 * 20 18 16 24 24 C 1.47077 * 118.23206 * 50.85331 * 15 12 11 25 25 H 1.09005 * 109.62948 * 68.80161 * 24 15 12 26 26 C 1.53000 * 109.62600 * 189.37918 * 24 15 12 27 27 C 1.46894 * 111.00235 * 170.00246 * 10 9 8 28 28 N 1.34630 * 125.89713 * 180.30715 * 2 1 3 29 29 C 1.46499 * 124.80781 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47267 * 90.02144 * 1 2 3 31 31 H 1.09000 * 109.47134 * 210.02632 * 1 2 3 32 32 H 1.09001 * 109.47133 * 330.02729 * 1 2 3 33 33 H 0.96705 * 116.99495 * 180.02562 * 6 4 3 34 34 H 1.08000 * 126.81154 * 179.97438 * 7 3 2 35 35 H 1.09003 * 109.46536 * 335.02239 * 9 8 7 36 36 H 1.09004 * 109.46906 * 215.02806 * 9 8 7 37 37 H 1.08997 * 109.49579 * 307.21290 * 11 10 9 38 38 H 1.08997 * 109.48957 * 67.27191 * 11 10 9 39 39 H 1.08997 * 109.47157 * 187.42912 * 14 12 11 40 40 H 1.09000 * 109.47503 * 307.43266 * 14 12 11 41 41 H 1.09003 * 109.47319 * 67.43102 * 14 12 11 42 42 H 0.97003 * 120.00538 * 175.07089 * 19 18 16 43 43 H 1.09004 * 109.47199 * 60.00106 * 26 24 15 44 44 H 1.09005 * 109.47212 * 180.02562 * 26 24 15 45 45 H 1.09007 * 109.47514 * 300.00227 * 26 24 15 46 46 H 1.09002 * 109.49105 * 52.78231 * 27 10 9 47 47 H 1.09000 * 109.51337 * 292.72341 * 27 10 9 48 48 H 1.08988 * 109.47629 * 270.20802 * 29 28 2 49 49 H 1.09000 * 109.46914 * 30.21255 * 29 28 2 50 50 H 1.09003 * 109.46658 * 150.20116 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8831 2.5229 -0.0007 5 8 0.6984 2.7947 -0.0010 6 8 2.8010 3.5099 -0.0012 7 6 3.6946 0.6161 0.0006 8 6 3.6109 -0.7256 0.0015 9 6 4.7816 -1.6746 0.0019 10 7 5.0859 -2.0763 1.3817 11 6 3.8602 -2.4327 2.1087 12 6 4.1938 -2.6722 3.5803 13 1 4.5166 -1.7364 4.0364 14 6 2.9558 -3.2022 4.3064 15 7 5.2779 -3.6627 3.6646 16 6 5.1632 -4.7632 4.4713 17 1 5.3433 -5.7491 4.0687 18 6 4.8153 -4.6118 5.8066 19 7 5.0080 -3.4581 6.4101 20 14 4.0737 -6.0454 6.7469 21 1 3.7924 -5.6284 8.1441 22 1 2.8088 -6.4655 6.0921 23 1 5.0297 -7.1817 6.7520 24 6 6.4857 -3.4429 2.8547 25 1 7.0332 -2.5825 3.2398 26 6 7.3737 -4.6877 2.9079 27 6 6.0594 -3.1760 1.4073 28 7 2.2964 -1.0906 -0.0058 29 6 1.8123 -2.4733 -0.0127 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 2.4690 4.4181 -0.0012 34 1 4.5979 1.2081 0.0004 35 1 5.6503 -1.1800 -0.4326 36 1 4.5337 -2.5575 -0.5874 37 1 3.1386 -1.6200 2.0256 38 1 3.4354 -3.3413 1.6819 39 1 3.1543 -3.2477 5.3772 40 1 2.1129 -2.5364 4.1210 41 1 2.7181 -4.2003 3.9383 42 1 4.7000 -3.3297 7.3209 43 1 6.8244 -5.5429 2.5139 44 1 8.2681 -4.5219 2.3073 45 1 7.6613 -4.8852 3.9406 46 1 6.9329 -2.9024 0.8154 47 1 5.6047 -4.0747 0.9904 48 1 1.6891 -2.8202 1.0131 49 1 0.8538 -2.5201 -0.5298 50 1 2.5338 -3.1082 -0.5270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599986381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:32 Heat of formation + Delta-G solvation = -5.367553 kcal Electronic energy + Delta-G solvation = -30940.444513 eV Core-core repulsion = 26969.591119 eV Total energy + Delta-G solvation = -3970.853394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.67127 -39.61474 -38.37497 -35.93158 -35.08678 -33.10401 -32.84321 -31.90561 -31.15866 -28.44192 -27.37062 -27.17417 -25.87790 -25.37416 -24.17019 -22.83361 -21.57233 -20.60987 -20.10913 -19.12687 -18.54261 -17.85077 -16.61265 -16.41042 -16.11237 -15.48702 -15.36372 -14.94798 -14.76223 -14.38201 -14.33560 -14.20390 -13.51657 -13.32915 -13.24278 -13.20176 -12.90388 -12.82777 -12.54008 -12.35560 -12.14432 -11.92354 -11.79774 -11.61557 -11.51671 -11.44537 -11.35695 -11.06409 -10.80505 -10.67348 -10.51871 -10.45715 -10.38446 -10.15581 -9.84901 -9.77499 -9.48344 -8.66790 -8.17287 -8.12851 -7.76386 -6.40385 -5.71804 -3.52117 1.48031 2.32405 2.62176 3.31361 3.33538 3.38714 3.40437 3.41804 4.39211 4.45959 4.58511 4.63133 4.73768 4.98181 5.02078 5.21268 5.25006 5.31207 5.32767 5.44109 5.49159 5.60132 5.65494 5.78736 5.84050 5.85481 5.90525 6.05445 6.10373 6.15781 6.25282 6.32997 6.40807 6.44998 6.56167 6.58680 6.66372 6.76430 6.77731 6.90876 7.06100 7.11831 7.15499 7.19735 7.46563 7.50941 7.63266 7.70869 7.85387 8.09170 8.59289 9.20225 9.74957 10.53401 11.17306 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015279 B = 0.003420 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.119735 B = 8186.293120 C = 8787.514330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.237 4.237 4 C 0.562 3.438 5 O -0.538 6.538 6 O -0.513 6.513 7 C -0.122 4.122 8 C 0.021 3.979 9 C 0.122 3.878 10 N -0.527 5.527 11 C 0.040 3.960 12 C 0.199 3.801 13 H 0.034 0.966 14 C -0.141 4.141 15 N -0.578 5.578 16 C -0.264 4.264 17 H 0.051 0.949 18 C 0.037 3.963 19 N -0.870 5.870 20 Si 0.878 3.122 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.172 3.828 25 H 0.033 0.967 26 C -0.129 4.129 27 C 0.049 3.951 28 N -0.429 5.429 29 C 0.058 3.942 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.047 0.953 42 H 0.254 0.746 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 5.541 -15.008 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.001 3.999 3 C -0.246 4.246 4 C 0.409 3.591 5 O -0.430 6.430 6 O -0.323 6.323 7 C -0.146 4.146 8 C -0.086 4.086 9 C -0.006 4.006 10 N -0.251 5.251 11 C -0.089 4.089 12 C 0.093 3.907 13 H 0.052 0.948 14 C -0.199 4.199 15 N -0.303 5.303 16 C -0.394 4.394 17 H 0.069 0.931 18 C -0.165 4.165 19 N -0.509 5.509 20 Si 0.706 3.294 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.205 1.205 24 C 0.065 3.935 25 H 0.051 0.949 26 C -0.187 4.187 27 C -0.080 4.080 28 N -0.105 5.105 29 C -0.083 4.083 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.265 0.735 34 H 0.169 0.831 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.105 0.895 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.908 5.274 -14.561 16.245 hybrid contribution -1.028 -0.773 0.193 1.300 sum -5.935 4.501 -14.368 16.184 Atomic orbital electron populations 1.20592 0.86964 1.04457 1.03293 1.20472 0.93445 0.84928 1.01034 1.19169 0.93901 0.88354 1.23141 1.19808 0.82681 0.85366 0.71204 1.90828 1.18470 1.84694 1.48980 1.84618 1.42235 1.19272 1.86186 1.21764 0.95583 0.92144 1.05120 1.20082 0.83536 0.94799 1.10162 1.20678 0.93462 0.94956 0.91509 1.62072 1.12944 1.38987 1.11131 1.23016 0.90612 0.97170 0.98132 1.20170 0.88774 0.92766 0.88979 0.94777 1.21972 0.94787 0.98685 1.04473 1.44027 1.11642 1.24959 1.49652 1.18607 1.46503 0.85793 0.88502 0.93145 1.25447 0.99119 0.95793 0.96153 1.70203 1.43856 1.24765 1.12107 0.86814 0.80054 0.83412 0.79147 1.21516 1.20637 1.20469 1.20538 0.89149 0.95580 0.88197 0.94903 1.21695 0.97235 0.97820 1.01989 1.22722 0.94328 0.90645 1.00304 1.43547 1.05690 1.06155 1.55061 1.22353 1.01239 0.80040 1.04655 0.90409 0.91343 0.88234 0.73550 0.83117 0.88829 0.94938 0.91892 0.95889 0.89497 0.96189 0.93429 0.93566 0.93409 0.94583 0.91526 0.91975 0.95561 0.89370 0.89672 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.28 36.00 0.33 -0.68 16 2 C 0.12 1.58 6.93 -81.51 -0.56 1.01 16 3 C -0.24 -3.42 6.33 -103.01 -0.65 -4.07 16 4 C 0.56 7.84 8.32 34.33 0.29 8.12 16 5 O -0.54 -8.26 15.66 -19.30 -0.30 -8.56 16 6 O -0.51 -5.75 13.33 -40.73 -0.54 -6.29 16 7 C -0.12 -1.74 10.89 -37.49 -0.41 -2.15 16 8 C 0.02 0.29 4.85 -81.89 -0.40 -0.11 16 9 C 0.12 1.66 5.42 -4.98 -0.03 1.63 16 10 N -0.53 -9.00 4.77 -236.06 -1.13 -10.12 16 11 C 0.04 0.73 3.05 -3.93 -0.01 0.72 16 12 C 0.20 4.51 3.16 -67.72 -0.21 4.30 16 13 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.14 -3.14 7.93 37.16 0.29 -2.85 16 15 N -0.58 -13.78 2.83 -157.27 -0.45 -14.23 16 16 C -0.26 -6.80 6.79 -15.06 -0.10 -6.90 16 17 H 0.05 1.32 7.14 -52.48 -0.37 0.94 16 18 C 0.04 0.98 3.22 -17.43 -0.06 0.93 16 19 N -0.87 -24.30 11.87 55.49 0.66 -23.64 16 20 Si 0.88 20.50 29.61 -169.99 -5.03 15.47 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.17 3.58 3.66 -67.49 -0.25 3.34 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.13 -2.45 8.17 37.16 0.30 -2.15 16 27 C 0.05 0.85 4.87 -3.71 -0.02 0.83 16 28 N -0.43 -5.44 2.31 -115.00 -0.27 -5.71 16 29 C 0.06 0.59 8.66 59.85 0.52 1.11 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.61 7.60 -51.93 -0.39 0.21 16 32 H 0.10 1.18 6.51 -51.93 -0.34 0.84 16 33 H 0.41 2.54 9.11 45.56 0.42 2.95 16 34 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.03 0.41 7.02 -51.93 -0.36 0.05 16 37 H 0.06 1.14 5.34 -51.93 -0.28 0.86 16 38 H 0.02 0.41 6.60 -51.93 -0.34 0.07 16 39 H 0.09 2.18 4.98 -51.93 -0.26 1.92 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 1.06 7.68 -51.93 -0.40 0.66 16 42 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.05 0.90 7.60 -51.93 -0.39 0.50 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.41 7.65 -51.93 -0.40 1.01 16 46 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.99 6.29 -51.94 -0.33 0.66 16 49 H 0.08 0.64 7.51 -51.93 -0.39 0.25 16 50 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -31.41 382.69 -9.39 -40.80 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.14 Total: 3.42 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.96 Total: 3.09 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.18 Total: -53.70 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.85 Total: -14.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.41 -9.39 -40.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.436 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds