Wall clock time and date at job start Tue Mar 31 2020 18:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37846 * 125.89902 * 2 1 4 4 C 1.47114 * 127.01848 * 359.96424 * 3 2 1 5 5 O 1.21550 * 120.00479 * 0.02562 * 4 3 2 6 6 O 1.34787 * 119.99437 * 180.02562 * 4 3 2 7 7 C 1.46738 * 105.95389 * 179.97438 * 3 2 1 8 8 C 1.34428 * 106.37456 * 359.97438 * 7 3 2 9 9 C 1.50704 * 125.45910 * 179.97438 * 8 7 3 10 10 N 1.46894 * 109.47160 * 95.02780 * 9 8 7 11 11 C 1.46898 * 111.00041 * 45.69838 * 10 9 8 12 12 C 1.52789 * 109.41936 * 187.11714 * 11 10 9 13 13 H 1.08993 * 109.46303 * 66.18200 * 12 11 10 14 14 C 1.52999 * 109.55399 * 186.61127 * 12 11 10 15 15 N 1.47085 * 108.76646 * 306.42172 * 12 11 10 16 16 C 1.36933 * 120.88120 * 231.12691 * 15 12 11 17 17 H 1.08003 * 119.99979 * 128.20248 * 16 15 12 18 18 C 1.38808 * 120.00343 * 308.20438 * 16 15 12 19 19 N 1.31620 * 119.99747 * 338.25040 * 18 16 15 20 20 Si 1.86795 * 120.00346 * 158.24906 * 18 16 15 21 21 H 1.48499 * 109.47312 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47144 * 300.00018 * 20 18 16 23 23 H 1.48500 * 109.47262 * 60.00206 * 20 18 16 24 24 C 1.47077 * 118.23206 * 50.85331 * 15 12 11 25 25 H 1.09005 * 109.62948 * 68.80161 * 24 15 12 26 26 C 1.53000 * 109.62600 * 189.37918 * 24 15 12 27 27 C 1.46894 * 111.00235 * 170.00246 * 10 9 8 28 28 N 1.34630 * 125.89713 * 180.30715 * 2 1 3 29 29 C 1.46499 * 124.80781 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47267 * 90.02144 * 1 2 3 31 31 H 1.09000 * 109.47134 * 210.02632 * 1 2 3 32 32 H 1.09001 * 109.47133 * 330.02729 * 1 2 3 33 33 H 0.96705 * 116.99495 * 180.02562 * 6 4 3 34 34 H 1.08000 * 126.81154 * 179.97438 * 7 3 2 35 35 H 1.09003 * 109.46536 * 335.02239 * 9 8 7 36 36 H 1.09004 * 109.46906 * 215.02806 * 9 8 7 37 37 H 1.08997 * 109.49579 * 307.21290 * 11 10 9 38 38 H 1.08997 * 109.48957 * 67.27191 * 11 10 9 39 39 H 1.08997 * 109.47157 * 187.42912 * 14 12 11 40 40 H 1.09000 * 109.47503 * 307.43266 * 14 12 11 41 41 H 1.09003 * 109.47319 * 67.43102 * 14 12 11 42 42 H 0.97003 * 120.00538 * 175.07089 * 19 18 16 43 43 H 1.09004 * 109.47199 * 60.00106 * 26 24 15 44 44 H 1.09005 * 109.47212 * 180.02562 * 26 24 15 45 45 H 1.09007 * 109.47514 * 300.00227 * 26 24 15 46 46 H 1.09002 * 109.49105 * 52.78231 * 27 10 9 47 47 H 1.09000 * 109.51337 * 292.72341 * 27 10 9 48 48 H 1.08988 * 109.47629 * 270.20802 * 29 28 2 49 49 H 1.09000 * 109.46914 * 30.21255 * 29 28 2 50 50 H 1.09003 * 109.46658 * 150.20116 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8831 2.5229 -0.0007 5 8 0.6984 2.7947 -0.0010 6 8 2.8010 3.5099 -0.0012 7 6 3.6946 0.6161 0.0006 8 6 3.6109 -0.7256 0.0015 9 6 4.7816 -1.6746 0.0019 10 7 5.0859 -2.0763 1.3817 11 6 3.8602 -2.4327 2.1087 12 6 4.1938 -2.6722 3.5803 13 1 4.5166 -1.7364 4.0364 14 6 2.9558 -3.2022 4.3064 15 7 5.2779 -3.6627 3.6646 16 6 5.1632 -4.7632 4.4713 17 1 5.3433 -5.7491 4.0687 18 6 4.8153 -4.6118 5.8066 19 7 5.0080 -3.4581 6.4101 20 14 4.0737 -6.0454 6.7469 21 1 3.7924 -5.6284 8.1441 22 1 2.8088 -6.4655 6.0921 23 1 5.0297 -7.1817 6.7520 24 6 6.4857 -3.4429 2.8547 25 1 7.0332 -2.5825 3.2398 26 6 7.3737 -4.6877 2.9079 27 6 6.0594 -3.1760 1.4073 28 7 2.2964 -1.0906 -0.0058 29 6 1.8123 -2.4733 -0.0127 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 2.4690 4.4181 -0.0012 34 1 4.5979 1.2081 0.0004 35 1 5.6503 -1.1800 -0.4326 36 1 4.5337 -2.5575 -0.5874 37 1 3.1386 -1.6200 2.0256 38 1 3.4354 -3.3413 1.6819 39 1 3.1543 -3.2477 5.3772 40 1 2.1129 -2.5364 4.1210 41 1 2.7181 -4.2003 3.9383 42 1 4.7000 -3.3297 7.3209 43 1 6.8244 -5.5429 2.5139 44 1 8.2681 -4.5219 2.3073 45 1 7.6613 -4.8852 3.9406 46 1 6.9329 -2.9024 0.8154 47 1 5.6047 -4.0747 0.9904 48 1 1.6891 -2.8202 1.0131 49 1 0.8538 -2.5201 -0.5298 50 1 2.5338 -3.1082 -0.5270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599986381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:31 Heat of formation + Delta-G solvation = -25.667828 kcal Electronic energy + Delta-G solvation = -30941.324799 eV Core-core repulsion = 26969.591119 eV Total energy + Delta-G solvation = -3971.733680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.66484 -40.65036 -39.88081 -36.94593 -36.62101 -34.59067 -33.95999 -33.39055 -32.54904 -29.84711 -28.85568 -28.11042 -27.39650 -26.81041 -25.63369 -23.95232 -22.87297 -22.12021 -21.36836 -20.78657 -19.53055 -18.85560 -18.11750 -17.64713 -17.43788 -16.76061 -16.45586 -16.32287 -16.13258 -16.05481 -15.68274 -15.41373 -15.06488 -14.63057 -14.50467 -14.28955 -14.04652 -13.88273 -13.66336 -13.36579 -13.34243 -13.24934 -13.22211 -13.05339 -12.89770 -12.67972 -12.55779 -12.49793 -12.42934 -12.32462 -12.31142 -12.09010 -11.92784 -11.54574 -11.50466 -11.46573 -11.19111 -10.10769 -9.66966 -9.30698 -8.97118 -8.38404 -7.67170 -5.54944 0.47357 1.27731 1.44606 1.47849 1.52788 1.71991 2.29717 2.50461 2.51812 3.13651 3.25317 3.59354 3.63731 3.72787 3.91425 4.04586 4.20711 4.25249 4.30659 4.39507 4.40275 4.51520 4.58297 4.63679 4.66870 4.68845 4.70261 4.71172 4.79116 4.85732 4.89854 4.90302 4.93167 4.96224 4.99368 5.04815 5.24676 5.29856 5.49564 5.55766 5.68790 5.69765 5.73997 5.76217 5.80869 6.05644 6.16771 6.23352 6.30883 6.57785 7.18201 7.26198 7.84901 8.58489 9.16202 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015279 B = 0.003420 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.119735 B = 8186.293120 C = 8787.514330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.121 3.879 3 C -0.268 4.268 4 C 0.561 3.439 5 O -0.559 6.559 6 O -0.511 6.511 7 C -0.134 4.134 8 C 0.010 3.990 9 C 0.129 3.871 10 N -0.545 5.545 11 C 0.064 3.936 12 C 0.197 3.803 13 H -0.013 1.013 14 C -0.131 4.131 15 N -0.592 5.592 16 C -0.261 4.261 17 H 0.049 0.951 18 C -0.002 4.002 19 N -0.908 5.908 20 Si 0.931 3.069 21 H -0.297 1.297 22 H -0.272 1.272 23 H -0.274 1.274 24 C 0.161 3.839 25 H 0.002 0.998 26 C -0.118 4.118 27 C 0.063 3.937 28 N -0.428 5.428 29 C 0.052 3.948 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.427 0.573 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.249 0.751 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 4.456 -17.464 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.001 3.999 3 C -0.276 4.276 4 C 0.410 3.590 5 O -0.453 6.453 6 O -0.324 6.324 7 C -0.158 4.158 8 C -0.097 4.097 9 C 0.001 3.999 10 N -0.270 5.270 11 C -0.065 4.065 12 C 0.091 3.909 13 H 0.005 0.995 14 C -0.190 4.190 15 N -0.318 5.318 16 C -0.392 4.392 17 H 0.067 0.933 18 C -0.201 4.201 19 N -0.550 5.550 20 Si 0.758 3.242 21 H -0.223 1.223 22 H -0.197 1.197 23 H -0.200 1.200 24 C 0.055 3.945 25 H 0.020 0.980 26 C -0.176 4.176 27 C -0.066 4.066 28 N -0.103 5.103 29 C -0.088 4.088 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.288 0.712 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.133 0.867 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.484 4.187 -17.049 18.392 hybrid contribution -0.778 -0.349 0.940 1.269 sum -6.263 3.838 -16.109 17.704 Atomic orbital electron populations 1.20630 0.85276 1.04622 1.04414 1.20885 0.94552 0.84790 0.99657 1.19465 0.94427 0.89102 1.24595 1.19843 0.82576 0.85796 0.70803 1.90811 1.19205 1.85085 1.50205 1.84573 1.41773 1.20437 1.85622 1.21925 0.95805 0.92697 1.05322 1.20147 0.84242 0.94721 1.10566 1.20698 0.94158 0.95662 0.89350 1.61978 1.12412 1.38979 1.13591 1.22595 0.91261 0.97598 0.95063 1.20087 0.88536 0.90449 0.91809 0.99543 1.21818 0.95557 0.99142 1.02455 1.44300 1.13049 1.24558 1.49860 1.18784 1.45321 0.86390 0.88667 0.93321 1.25991 0.99806 0.97452 0.96883 1.70321 1.45652 1.26832 1.12147 0.85956 0.79641 0.80968 0.77604 1.22329 1.19743 1.19995 1.20728 0.88311 0.95297 0.90181 0.98002 1.21571 0.98346 0.96952 1.00722 1.22502 0.95515 0.91086 0.97513 1.43712 1.05260 1.07019 1.54301 1.22553 1.03057 0.78633 1.04541 0.88715 0.89388 0.89773 0.71201 0.82887 0.87144 0.93007 0.91673 0.94881 0.92476 0.93948 0.93475 0.94212 0.93158 0.90981 0.94641 0.89012 0.94982 0.90419 0.86732 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.28 71.24 0.66 -1.10 16 2 C 0.12 2.97 6.93 42.04 0.29 3.26 16 3 C -0.27 -7.47 6.33 -18.82 -0.12 -7.59 16 4 C 0.56 15.37 8.32 70.15 0.58 15.95 16 5 O -0.56 -16.94 15.66 19.67 0.31 -16.64 16 6 O -0.51 -11.06 13.33 -56.99 -0.76 -11.82 16 7 C -0.13 -3.65 10.89 23.62 0.26 -3.39 16 8 C 0.01 0.26 4.85 40.97 0.20 0.46 16 9 C 0.13 3.10 5.42 85.56 0.46 3.56 16 10 N -0.55 -17.52 4.77 -900.77 -4.30 -21.82 16 11 C 0.06 2.26 3.05 86.23 0.26 2.53 16 12 C 0.20 9.04 3.16 44.81 0.14 9.19 16 13 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 14 C -0.13 -5.89 7.93 71.98 0.57 -5.32 16 15 N -0.59 -28.46 2.83 -651.48 -1.84 -30.30 16 16 C -0.26 -13.53 6.79 84.03 0.57 -12.95 16 17 H 0.05 2.53 7.14 -2.91 -0.02 2.51 16 18 C 0.00 -0.11 3.22 84.86 0.27 0.16 16 19 N -0.91 -52.52 11.87 21.65 0.26 -52.26 16 20 Si 0.93 42.54 29.61 68.60 2.03 44.57 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.16 6.64 3.66 44.96 0.16 6.80 16 25 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 26 C -0.12 -4.34 8.17 71.98 0.59 -3.76 16 27 C 0.06 2.00 4.87 86.38 0.42 2.42 16 28 N -0.43 -9.81 2.31 -517.76 -1.20 -11.00 16 29 C 0.05 0.89 8.66 127.77 1.11 1.99 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.31 7.60 -2.39 -0.02 1.29 16 32 H 0.08 1.91 6.51 -2.39 -0.02 1.90 16 33 H 0.43 4.89 9.11 -74.05 -0.67 4.22 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.08 7.02 -2.38 -0.02 1.07 16 37 H 0.07 2.28 5.34 -2.39 -0.01 2.26 16 38 H 0.03 1.11 6.60 -2.39 -0.02 1.10 16 39 H 0.06 2.92 4.98 -2.39 -0.01 2.91 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 2.06 7.68 -2.39 -0.02 2.05 16 42 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 43 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 44 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.03 1.49 7.65 -2.38 -0.02 1.48 16 46 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.52 6.29 -2.39 -0.02 1.50 16 49 H 0.11 1.25 7.51 -2.39 -0.02 1.24 16 50 H 0.10 1.46 6.98 -2.39 -0.02 1.45 16 Total: -1.00 -70.07 382.69 1.21 -68.86 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.28 Total: 18.21 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.44 Total: 12.21 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -7.08 Total: -115.39 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.45 Total: -28.46 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.07 1.21 -68.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599986381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.193 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds