Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 110.34301 * 2 1 4 4 O 1.21280 * 120.00160 * 239.29848 * 3 2 1 5 5 N 1.34778 * 120.00070 * 59.29939 * 3 2 1 6 6 C 1.46494 * 120.00111 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47486 * 180.02562 * 6 5 3 8 8 H 1.09000 * 110.62249 * 308.10467 * 7 6 5 9 9 C 1.55134 * 110.70509 * 71.39383 * 7 6 5 10 10 C 1.54910 * 101.65288 * 154.03886 * 9 7 6 11 11 N 1.47847 * 104.79349 * 322.93413 * 10 9 7 12 12 C 1.46901 * 110.99683 * 146.36315 * 11 10 9 13 13 C 1.50697 * 109.47421 * 49.15337 * 12 11 10 14 14 O 1.21292 * 120.00126 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99820 * 179.97438 * 13 12 11 16 16 C 1.37107 * 119.99805 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99741 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99848 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99889 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47086 * 89.99812 * 20 18 16 22 22 H 1.48495 * 109.46986 * 210.00128 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99795 * 20 18 16 24 24 C 1.47443 * 108.57012 * 24.09261 * 11 10 9 25 25 C 1.51102 * 110.38793 * 122.40588 * 2 1 3 26 26 C 1.30527 * 111.10305 * 135.24584 * 25 2 1 27 27 C 1.51108 * 111.10398 * 0.02562 * 26 25 2 28 28 C 1.54634 * 110.38841 * 237.71421 * 2 1 3 29 29 H 1.09001 * 109.47002 * 182.28538 * 1 2 3 30 30 H 1.08993 * 109.46955 * 302.28975 * 1 2 3 31 31 H 1.09000 * 109.47050 * 62.28804 * 1 2 3 32 32 H 0.97003 * 119.99640 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.47162 * 299.99516 * 6 5 3 34 34 H 1.09003 * 109.47765 * 59.99445 * 6 5 3 35 35 H 1.09004 * 110.99538 * 272.12975 * 9 7 6 36 36 H 1.09006 * 110.99026 * 35.95088 * 9 7 6 37 37 H 1.08997 * 110.37808 * 204.10061 * 10 9 7 38 38 H 1.09003 * 110.36988 * 81.76030 * 10 9 7 39 39 H 1.09001 * 109.46897 * 169.15948 * 12 11 10 40 40 H 1.09003 * 109.47109 * 289.15258 * 12 11 10 41 41 H 0.96995 * 120.00279 * 0.02562 * 15 13 12 42 42 H 0.97000 * 120.00166 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88639 * 239.60780 * 24 11 10 44 44 H 1.08997 * 110.02442 * 118.49035 * 24 11 10 45 45 H 1.07993 * 124.44729 * 315.23775 * 25 2 1 46 46 H 1.07991 * 124.44964 * 179.97438 * 26 25 2 47 47 H 1.08996 * 110.38274 * 224.74565 * 27 26 25 48 48 H 1.08999 * 110.39032 * 102.37040 * 27 26 25 49 49 H 1.09003 * 111.03572 * 334.58555 * 28 2 1 50 50 H 1.09001 * 111.03934 * 98.47839 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7676 1.7952 -0.9031 5 7 1.7295 2.2520 1.0036 6 6 2.2383 3.6258 1.0033 7 6 1.7257 4.3599 2.2441 8 1 0.6430 4.2644 2.3267 9 6 2.4259 3.8303 3.5231 10 6 2.3233 5.0551 4.4659 11 7 2.5133 6.2269 3.5846 12 6 1.7145 7.3693 4.0483 13 6 1.9412 7.5748 5.5239 14 8 2.6945 6.8421 6.1297 15 7 1.3078 8.5736 6.1703 16 6 1.5144 8.7609 7.5126 17 1 2.1851 8.1085 8.0519 18 6 0.8609 9.7902 8.1791 19 7 0.0445 10.5837 7.5230 20 14 1.1430 10.0459 10.0079 21 1 2.2841 10.9751 10.2076 22 1 -0.0795 10.6242 10.6212 23 1 1.4488 8.7417 10.6487 24 6 2.1415 5.8455 2.2097 25 6 2.0565 -0.7590 1.1958 26 6 3.0308 -1.5575 0.8539 27 6 3.3170 -1.4636 -0.6269 28 6 2.0688 -0.7742 -1.2254 29 1 -0.3633 -1.0269 0.0410 30 1 -0.3633 0.5489 0.8687 31 1 -0.3633 0.4779 -0.9098 32 1 1.1584 1.9464 1.7257 33 1 3.3281 3.6096 1.0157 34 1 1.8928 4.1412 0.1071 35 1 1.8912 2.9744 3.9352 36 1 3.4673 3.5783 3.3222 37 1 3.1070 5.0183 5.2226 38 1 1.3410 5.0899 4.9371 39 1 2.0143 8.2661 3.5062 40 1 0.6580 7.1714 3.8671 41 1 0.7057 9.1597 5.6858 42 1 -0.4120 11.3021 7.9883 43 1 2.9954 5.9763 1.5450 44 1 1.3069 6.4563 1.8657 45 1 1.6766 -0.6545 2.2013 46 1 3.5630 -2.2002 1.5394 47 1 3.4417 -2.4590 -1.0532 48 1 4.2067 -0.8594 -0.8041 49 1 1.3437 -1.5102 -1.5728 50 1 2.3457 -0.0916 -2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663607624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = -53.448938 kcal Electronic energy + Delta-G solvation = -28663.377396 eV Core-core repulsion = 24690.439037 eV Total energy + Delta-G solvation = -3972.938359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90946 -39.45036 -38.08356 -37.45166 -35.13742 -33.93602 -32.42562 -31.53775 -31.15889 -29.46559 -29.12327 -27.21405 -25.65920 -24.91633 -23.95414 -22.27026 -21.00855 -20.68204 -20.06669 -19.24681 -19.02745 -17.88724 -17.43487 -16.62141 -16.15999 -15.76293 -15.46129 -15.19509 -15.10777 -14.65642 -14.46878 -14.08906 -13.86722 -13.70408 -13.62289 -13.42823 -13.17993 -12.72242 -12.63620 -12.37788 -12.30499 -12.21572 -12.03842 -11.78341 -11.56022 -11.55635 -11.51431 -11.19864 -11.14311 -11.12167 -10.97836 -10.74653 -10.60511 -10.39675 -10.26569 -10.23655 -9.51652 -9.29608 -9.21413 -8.33632 -7.99983 -7.87481 -6.44100 -3.85049 1.75305 2.46514 2.96041 3.16036 3.24861 3.30329 3.87461 4.05795 4.07509 4.21724 4.27365 4.40999 4.52572 4.57524 4.62884 4.81929 4.86535 4.98186 5.08646 5.10824 5.22615 5.23341 5.27842 5.28633 5.38334 5.44813 5.52142 5.53599 5.55392 5.65336 5.66961 5.73503 5.77094 5.84302 5.90365 5.91500 5.98490 6.05605 6.12909 6.19958 6.26484 6.36859 6.43362 6.68682 7.25247 7.30479 7.34663 7.52909 7.99427 8.03512 8.58874 9.15360 9.51355 10.02768 10.73537 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028542 B = 0.001813 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.790386 B =15442.165236 C =15748.483712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C 0.530 3.470 4 O -0.539 6.539 5 N -0.724 5.724 6 C 0.132 3.868 7 C -0.124 4.124 8 H 0.080 0.920 9 C -0.130 4.130 10 C 0.061 3.939 11 N -0.509 5.509 12 C 0.040 3.960 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.562 5.562 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.050 3.950 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.105 4.105 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -21.257 -16.364 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C 0.315 3.685 4 O -0.416 6.416 5 N -0.375 5.375 6 C 0.008 3.992 7 C -0.144 4.144 8 H 0.098 0.902 9 C -0.168 4.168 10 C -0.066 4.066 11 N -0.234 5.234 12 C -0.092 4.092 13 C 0.226 3.774 14 O -0.466 6.466 15 N -0.198 5.198 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.079 4.079 25 C -0.184 4.184 26 C -0.164 4.164 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.189 -21.098 -16.519 26.796 hybrid contribution -1.527 0.369 1.104 1.920 sum -1.338 -20.728 -15.415 25.867 Atomic orbital electron populations 1.21801 0.91991 1.03002 1.02540 1.20652 0.97168 0.92259 0.96195 1.20312 0.80079 0.86616 0.81451 1.90679 1.37324 1.77345 1.36229 1.45981 1.52698 1.12841 1.25945 1.21366 0.99365 0.80819 0.97656 1.22660 1.00444 0.96391 0.94878 0.90175 1.22948 1.00815 0.98376 0.94671 1.23058 1.02003 0.86420 0.95121 1.63441 1.53272 1.05818 1.00829 1.22136 0.95543 0.95430 0.96089 1.19753 0.85268 0.84311 0.88061 1.90490 1.40204 1.47586 1.68351 1.41862 1.40576 1.27782 1.09623 1.19698 1.25439 1.13803 0.83932 0.87897 1.25271 0.96211 0.95911 1.00567 1.69612 1.28843 1.18655 1.37129 0.85852 0.77664 0.78738 0.82000 1.20364 1.20941 1.19441 1.22833 1.00000 0.92895 0.92137 1.23045 0.99170 0.98398 0.97792 1.23426 0.97024 0.98529 0.97387 1.21424 0.99021 1.00946 0.92788 1.22486 0.96830 0.98719 0.96532 0.91182 0.92054 0.91853 0.76564 0.90981 0.91409 0.91379 0.90666 0.87859 0.94047 0.89270 0.93471 0.77460 0.91851 0.90264 0.92544 0.85205 0.85362 0.90847 0.90149 0.90449 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.41 37.16 0.31 -0.50 16 2 C -0.06 -0.47 0.73 -155.75 -0.11 -0.58 16 3 C 0.53 5.61 6.54 -10.98 -0.07 5.54 16 4 O -0.54 -7.69 15.45 5.56 0.09 -7.61 16 5 N -0.72 -6.52 5.32 -60.29 -0.32 -6.84 16 6 C 0.13 1.32 4.97 -4.04 -0.02 1.30 16 7 C -0.12 -1.29 2.96 -88.80 -0.26 -1.55 16 8 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 9 C -0.13 -1.54 6.44 -24.59 -0.16 -1.69 16 10 C 0.06 1.00 4.95 -2.30 -0.01 0.99 16 11 N -0.51 -8.43 5.21 -232.69 -1.21 -9.64 16 12 C 0.04 0.71 5.32 -4.98 -0.03 0.68 16 13 C 0.44 10.27 7.31 -10.99 -0.08 10.19 16 14 O -0.58 -15.25 13.13 5.55 0.07 -15.18 16 15 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 16 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 20 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.05 0.62 6.46 -2.84 -0.02 0.60 16 25 C -0.17 -1.18 9.35 -35.70 -0.33 -1.52 16 26 C -0.15 -1.04 10.78 -35.69 -0.38 -1.43 16 27 C -0.10 -0.78 6.81 -26.82 -0.18 -0.97 16 28 C -0.11 -0.85 6.04 -25.01 -0.15 -1.00 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.31 7.54 -51.93 -0.39 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 2.80 7.88 -40.82 -0.32 2.48 16 33 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.92 7.94 -51.93 -0.41 0.50 16 37 H 0.10 2.02 6.71 -51.93 -0.35 1.67 16 38 H 0.04 0.73 7.54 -51.93 -0.39 0.34 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 41 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 44 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.48 7.91 -51.93 -0.41 0.07 16 50 H 0.09 0.86 6.92 -51.93 -0.36 0.50 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -32.40 398.90 -9.78 -42.18 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.32 Total: 10.88 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.74 Total: 2.15 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.87 Total: -54.32 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.40 -9.78 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.267 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds