Wall clock time and date at job start Tue Mar 31 2020 18:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 110.34301 * 2 1 4 4 O 1.21280 * 120.00160 * 239.29848 * 3 2 1 5 5 N 1.34778 * 120.00070 * 59.29939 * 3 2 1 6 6 C 1.46494 * 120.00111 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47486 * 180.02562 * 6 5 3 8 8 H 1.09000 * 110.62249 * 308.10467 * 7 6 5 9 9 C 1.55134 * 110.70509 * 71.39383 * 7 6 5 10 10 C 1.54910 * 101.65288 * 154.03886 * 9 7 6 11 11 N 1.47847 * 104.79349 * 322.93413 * 10 9 7 12 12 C 1.46901 * 110.99683 * 146.36315 * 11 10 9 13 13 C 1.50697 * 109.47421 * 49.15337 * 12 11 10 14 14 O 1.21292 * 120.00126 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99820 * 179.97438 * 13 12 11 16 16 C 1.37107 * 119.99805 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99741 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99848 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99889 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47086 * 89.99812 * 20 18 16 22 22 H 1.48495 * 109.46986 * 210.00128 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99795 * 20 18 16 24 24 C 1.47443 * 108.57012 * 24.09261 * 11 10 9 25 25 C 1.51102 * 110.38793 * 122.40588 * 2 1 3 26 26 C 1.30527 * 111.10305 * 135.24584 * 25 2 1 27 27 C 1.51108 * 111.10398 * 0.02562 * 26 25 2 28 28 C 1.54634 * 110.38841 * 237.71421 * 2 1 3 29 29 H 1.09001 * 109.47002 * 182.28538 * 1 2 3 30 30 H 1.08993 * 109.46955 * 302.28975 * 1 2 3 31 31 H 1.09000 * 109.47050 * 62.28804 * 1 2 3 32 32 H 0.97003 * 119.99640 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.47162 * 299.99516 * 6 5 3 34 34 H 1.09003 * 109.47765 * 59.99445 * 6 5 3 35 35 H 1.09004 * 110.99538 * 272.12975 * 9 7 6 36 36 H 1.09006 * 110.99026 * 35.95088 * 9 7 6 37 37 H 1.08997 * 110.37808 * 204.10061 * 10 9 7 38 38 H 1.09003 * 110.36988 * 81.76030 * 10 9 7 39 39 H 1.09001 * 109.46897 * 169.15948 * 12 11 10 40 40 H 1.09003 * 109.47109 * 289.15258 * 12 11 10 41 41 H 0.96995 * 120.00279 * 0.02562 * 15 13 12 42 42 H 0.97000 * 120.00166 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88639 * 239.60780 * 24 11 10 44 44 H 1.08997 * 110.02442 * 118.49035 * 24 11 10 45 45 H 1.07993 * 124.44729 * 315.23775 * 25 2 1 46 46 H 1.07991 * 124.44964 * 179.97438 * 26 25 2 47 47 H 1.08996 * 110.38274 * 224.74565 * 27 26 25 48 48 H 1.08999 * 110.39032 * 102.37040 * 27 26 25 49 49 H 1.09003 * 111.03572 * 334.58555 * 28 2 1 50 50 H 1.09001 * 111.03934 * 98.47839 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7676 1.7952 -0.9031 5 7 1.7295 2.2520 1.0036 6 6 2.2383 3.6258 1.0033 7 6 1.7257 4.3599 2.2441 8 1 0.6430 4.2644 2.3267 9 6 2.4259 3.8303 3.5231 10 6 2.3233 5.0551 4.4659 11 7 2.5133 6.2269 3.5846 12 6 1.7145 7.3693 4.0483 13 6 1.9412 7.5748 5.5239 14 8 2.6945 6.8421 6.1297 15 7 1.3078 8.5736 6.1703 16 6 1.5144 8.7609 7.5126 17 1 2.1851 8.1085 8.0519 18 6 0.8609 9.7902 8.1791 19 7 0.0445 10.5837 7.5230 20 14 1.1430 10.0459 10.0079 21 1 2.2841 10.9751 10.2076 22 1 -0.0795 10.6242 10.6212 23 1 1.4488 8.7417 10.6487 24 6 2.1415 5.8455 2.2097 25 6 2.0565 -0.7590 1.1958 26 6 3.0308 -1.5575 0.8539 27 6 3.3170 -1.4636 -0.6269 28 6 2.0688 -0.7742 -1.2254 29 1 -0.3633 -1.0269 0.0410 30 1 -0.3633 0.5489 0.8687 31 1 -0.3633 0.4779 -0.9098 32 1 1.1584 1.9464 1.7257 33 1 3.3281 3.6096 1.0157 34 1 1.8928 4.1412 0.1071 35 1 1.8912 2.9744 3.9352 36 1 3.4673 3.5783 3.3222 37 1 3.1070 5.0183 5.2226 38 1 1.3410 5.0899 4.9371 39 1 2.0143 8.2661 3.5062 40 1 0.6580 7.1714 3.8671 41 1 0.7057 9.1597 5.6858 42 1 -0.4120 11.3021 7.9883 43 1 2.9954 5.9763 1.5450 44 1 1.3069 6.4563 1.8657 45 1 1.6766 -0.6545 2.2013 46 1 3.5630 -2.2002 1.5394 47 1 3.4417 -2.4590 -1.0532 48 1 4.2067 -0.8594 -0.8041 49 1 1.3437 -1.5102 -1.5728 50 1 2.3457 -0.0916 -2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663607624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:57 Heat of formation + Delta-G solvation = -76.603967 kcal Electronic energy + Delta-G solvation = -28664.381474 eV Core-core repulsion = 24690.439037 eV Total energy + Delta-G solvation = -3973.942437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.64435 -40.81880 -39.36550 -38.49084 -36.26205 -35.77440 -33.48578 -33.17031 -32.20430 -30.42427 -29.81174 -28.63755 -26.75410 -25.94110 -25.25548 -23.05221 -22.25281 -21.57171 -21.03408 -20.74019 -19.86780 -19.71628 -18.12566 -17.86011 -17.27579 -16.92672 -16.51714 -16.44994 -16.25939 -15.89443 -15.77118 -15.59125 -15.21966 -14.65165 -14.58298 -14.33387 -14.20873 -13.95941 -13.55238 -13.48987 -13.37318 -13.24278 -13.03307 -12.89382 -12.85770 -12.75511 -12.42831 -12.30779 -12.20592 -12.13606 -12.11044 -12.01519 -11.85973 -11.68612 -11.65583 -11.46984 -11.02287 -10.18427 -10.08743 -10.00898 -9.84274 -9.20232 -8.47374 -5.96025 1.19023 1.37246 1.41234 1.53729 1.68934 2.03478 2.20709 2.28773 2.88758 3.19799 3.31825 3.49468 3.58217 3.65102 3.65326 3.84317 3.92226 4.07926 4.27687 4.30659 4.33172 4.36119 4.41839 4.46104 4.49268 4.56160 4.59414 4.65304 4.76296 4.80982 4.82219 4.88058 4.93270 4.97380 5.01701 5.06985 5.12148 5.22003 5.27825 5.33147 5.34199 5.40788 5.46495 5.53071 5.89933 5.92348 6.04033 6.17639 6.53616 6.59787 7.11998 7.23269 7.54727 8.10328 8.69984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028542 B = 0.001813 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.790386 B =15442.165236 C =15748.483712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C 0.525 3.475 4 O -0.583 6.583 5 N -0.713 5.713 6 C 0.139 3.861 7 C -0.106 4.106 8 H 0.098 0.902 9 C -0.117 4.117 10 C 0.063 3.937 11 N -0.530 5.530 12 C 0.052 3.948 13 C 0.437 3.563 14 O -0.615 6.615 15 N -0.573 5.573 16 C -0.332 4.332 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.047 3.953 25 C -0.168 4.168 26 C -0.152 4.152 27 C -0.108 4.108 28 C -0.111 4.111 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.413 0.587 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.095 0.905 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 -22.312 -16.637 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 C 0.313 3.687 4 O -0.462 6.462 5 N -0.364 5.364 6 C 0.015 3.985 7 C -0.125 4.125 8 H 0.117 0.883 9 C -0.155 4.155 10 C -0.065 4.065 11 N -0.255 5.255 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.502 6.502 15 N -0.210 5.210 16 C -0.461 4.461 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.080 4.080 25 C -0.186 4.186 26 C -0.170 4.170 27 C -0.145 4.145 28 C -0.149 4.149 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.285 -22.154 -16.797 27.832 hybrid contribution -1.018 0.679 1.139 1.672 sum -2.303 -21.475 -15.658 26.677 Atomic orbital electron populations 1.21817 0.90267 1.04097 1.02883 1.20683 0.98459 0.90410 0.96591 1.20850 0.79336 0.87688 0.80870 1.90663 1.39332 1.78323 1.37927 1.45888 1.52330 1.12262 1.25956 1.21193 0.98500 0.81386 0.97397 1.22514 1.01226 0.94824 0.93965 0.88342 1.22848 1.01307 0.97107 0.94239 1.22846 0.99491 0.88753 0.95399 1.63374 1.53828 1.05588 1.02684 1.22029 0.97197 0.96921 0.91815 1.20774 0.83670 0.82789 0.90296 1.90484 1.41312 1.48438 1.69924 1.41932 1.41309 1.28635 1.09118 1.19650 1.26458 1.14651 0.85381 0.90291 1.26041 0.95557 0.95132 1.04603 1.69671 1.28977 1.18809 1.38640 0.84928 0.78065 0.78443 0.76903 1.19772 1.19511 1.19728 1.22916 1.01046 0.94496 0.89587 1.23214 0.99173 0.98013 0.98192 1.23616 0.97197 0.99001 0.97202 1.21441 0.98101 1.01365 0.93586 1.22507 0.97514 0.98763 0.96089 0.89802 0.90849 0.92328 0.75057 0.92457 0.91319 0.89004 0.91062 0.91949 0.95622 0.87546 0.91136 0.77034 0.91305 0.89735 0.90771 0.83413 0.83894 0.89336 0.92119 0.88623 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.41 71.98 0.61 -0.65 16 2 C -0.06 -0.82 0.73 -52.99 -0.04 -0.86 16 3 C 0.53 10.54 6.54 87.66 0.57 11.11 16 4 O -0.58 -16.71 15.45 -3.03 -0.05 -16.76 16 5 N -0.71 -11.32 5.32 -463.06 -2.46 -13.79 16 6 C 0.14 2.53 4.97 86.38 0.43 2.96 16 7 C -0.11 -1.92 2.96 -9.61 -0.03 -1.95 16 8 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 9 C -0.12 -2.57 6.44 31.98 0.21 -2.36 16 10 C 0.06 2.06 4.95 86.77 0.43 2.49 16 11 N -0.53 -17.08 5.21 -890.10 -4.64 -21.72 16 12 C 0.05 1.79 5.32 85.56 0.45 2.24 16 13 C 0.44 20.73 7.31 87.66 0.64 21.37 16 14 O -0.62 -33.44 13.13 -3.07 -0.04 -33.48 16 15 N -0.57 -29.32 5.29 -306.99 -1.62 -30.94 16 16 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 19 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 20 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.05 1.07 6.46 86.65 0.56 1.63 16 25 C -0.17 -2.00 9.35 26.26 0.25 -1.76 16 26 C -0.15 -1.91 10.78 26.26 0.28 -1.63 16 27 C -0.11 -1.54 6.81 30.54 0.21 -1.33 16 28 C -0.11 -1.66 6.04 31.71 0.19 -1.46 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.51 7.54 -2.39 -0.02 0.49 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.41 4.46 7.88 -92.71 -0.73 3.73 16 33 H 0.06 1.25 8.00 -2.39 -0.02 1.23 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.65 7.94 -2.38 -0.02 1.63 16 37 H 0.06 2.55 6.71 -2.39 -0.02 2.53 16 38 H 0.03 0.90 7.54 -2.39 -0.02 0.88 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.32 16 40 H 0.07 2.13 7.96 -2.39 -0.02 2.11 16 41 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.08 1.85 7.82 -2.39 -0.02 1.83 16 44 H 0.07 1.45 7.50 -2.39 -0.02 1.43 16 45 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.33 8.06 -2.92 -0.02 1.30 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 49 H 0.10 1.03 7.91 -2.39 -0.02 1.01 16 50 H 0.07 1.34 6.92 -2.39 -0.02 1.33 16 Total: -1.00 -72.61 398.90 -0.97 -73.58 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -0.52 Total: 35.90 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.04 Total: 11.59 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -8.44 Total: -115.63 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.09 Total: -50.24 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.61 -0.97 -73.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.024 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds