Wall clock time and date at job start Tue Mar 31 2020 18:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.34459 * 2 1 4 4 O 1.21283 * 120.00200 * 239.29981 * 3 2 1 5 5 N 1.34776 * 119.99905 * 59.02905 * 3 2 1 6 6 C 1.46499 * 120.00133 * 180.27059 * 5 3 2 7 7 C 1.52999 * 109.47324 * 179.97438 * 6 5 3 8 8 H 1.08999 * 110.64108 * 54.29813 * 7 6 5 9 9 C 1.54598 * 110.72316 * 291.15068 * 7 6 5 10 10 C 1.53998 * 105.13739 * 219.68301 * 9 7 6 11 11 N 1.47896 * 107.05744 * 358.77217 * 10 9 7 12 12 C 1.46903 * 110.99762 * 145.84502 * 11 10 9 13 13 C 1.50700 * 109.47303 * 183.36466 * 12 11 10 14 14 O 1.21295 * 119.99944 * 353.86191 * 13 12 11 15 15 N 1.34776 * 120.00310 * 173.86395 * 13 12 11 16 16 C 1.37095 * 120.00340 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99818 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00202 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99759 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47050 * 90.00151 * 20 18 16 22 22 H 1.48498 * 109.47241 * 210.00174 * 20 18 16 23 23 H 1.48502 * 109.47058 * 330.00415 * 20 18 16 24 24 C 1.48726 * 105.94438 * 25.20600 * 11 10 9 25 25 C 1.51098 * 110.39015 * 122.29353 * 2 1 3 26 26 C 1.30801 * 110.95055 * 135.35757 * 25 2 1 27 27 C 1.51102 * 111.14766 * 359.94722 * 26 25 2 28 28 C 1.54633 * 104.72972 * 343.60002 * 27 26 25 29 29 H 1.08999 * 109.47236 * 60.69362 * 1 2 3 30 30 H 1.08997 * 109.47198 * 180.70146 * 1 2 3 31 31 H 1.08999 * 109.47041 * 300.69839 * 1 2 3 32 32 H 0.97002 * 120.00122 * 0.27497 * 5 3 2 33 33 H 1.08996 * 109.47198 * 300.00070 * 6 5 3 34 34 H 1.09005 * 109.46670 * 59.99997 * 6 5 3 35 35 H 1.08999 * 110.31020 * 338.59590 * 9 7 6 36 36 H 1.09002 * 110.30802 * 100.77134 * 9 7 6 37 37 H 1.08999 * 109.91288 * 118.12978 * 10 9 7 38 38 H 1.09002 * 109.91326 * 239.42012 * 10 9 7 39 39 H 1.09000 * 109.46931 * 303.36593 * 12 11 10 40 40 H 1.09003 * 109.47351 * 63.36272 * 12 11 10 41 41 H 0.97001 * 119.99561 * 359.97438 * 15 13 12 42 42 H 0.97009 * 119.99796 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.83853 * 202.57339 * 24 11 10 44 44 H 1.09001 * 110.59250 * 79.38206 * 24 11 10 45 45 H 1.08004 * 124.44664 * 315.36144 * 25 2 1 46 46 H 1.07992 * 124.39924 * 179.97438 * 26 25 2 47 47 H 1.08992 * 110.38789 * 224.78233 * 27 26 25 48 48 H 1.09005 * 110.47853 * 102.45547 * 27 26 25 49 49 H 1.09005 * 111.03274 * 266.59754 * 28 27 26 50 50 H 1.08998 * 111.03978 * 142.66184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9031 5 7 1.7250 2.2536 1.0008 6 6 2.2295 3.6290 0.9978 7 6 1.7113 4.3651 2.2349 8 1 1.9604 3.8144 3.1420 9 6 0.1857 4.5947 2.1359 10 6 -0.0450 6.0105 2.6962 11 7 1.2742 6.5317 3.1148 12 6 1.3615 7.9815 2.8941 13 6 2.7439 8.4620 3.2536 14 8 3.5393 7.6980 3.7584 15 7 3.0963 9.7407 3.0143 16 6 4.3537 10.1779 3.3419 17 1 5.0620 9.4977 3.7913 18 6 4.7172 11.4960 3.0947 19 7 3.8555 12.3236 2.5474 20 14 6.4307 12.0917 3.5404 21 1 7.3423 11.8848 2.3865 22 1 6.3801 13.5368 3.8784 23 1 6.9318 11.3269 4.7105 24 6 2.2796 5.8052 2.2943 25 6 2.0564 -0.7567 1.1972 26 6 3.0341 -1.5547 0.8533 27 6 3.3182 -1.4617 -0.6279 28 6 2.0686 -0.7742 -1.2255 29 1 -0.3634 0.5030 -0.8961 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5246 0.8837 32 1 1.1543 1.9480 1.7232 33 1 3.3193 3.6163 1.0120 34 1 1.8837 4.1408 0.0996 35 1 -0.1381 4.5418 1.0965 36 1 -0.3475 3.8584 2.7372 37 1 -0.4693 6.6511 1.9231 38 1 -0.7158 5.9654 3.5542 39 1 1.1614 8.2020 1.8456 40 1 0.6265 8.4890 3.5188 41 1 2.4603 10.3515 2.6103 42 1 4.1095 13.2438 2.3745 43 1 3.2556 5.8139 2.7797 44 1 2.3421 6.2356 1.2948 45 1 1.6753 -0.6516 2.2023 46 1 3.5678 -2.1963 1.5386 47 1 3.4440 -2.4571 -1.0536 48 1 4.2070 -0.8571 -0.8085 49 1 1.3444 -1.5116 -1.5718 50 1 2.3444 -0.0916 -2.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663607625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:02 Heat of formation + Delta-G solvation = -55.057183 kcal Electronic energy + Delta-G solvation = -28757.723829 eV Core-core repulsion = 24784.715730 eV Total energy + Delta-G solvation = -3973.008098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86001 -39.34750 -38.01764 -37.43700 -35.11790 -33.90584 -32.45452 -31.52837 -31.12490 -29.46837 -29.11618 -27.08239 -25.68984 -24.95663 -23.97942 -22.24475 -21.12971 -20.40693 -20.03439 -19.17546 -19.03305 -17.86615 -17.37599 -16.59406 -16.14760 -15.69426 -15.47441 -15.26102 -15.00060 -14.68672 -14.48415 -14.26993 -13.74048 -13.70801 -13.63081 -13.41401 -13.08695 -12.72448 -12.64785 -12.37482 -12.24039 -12.18553 -12.03378 -11.73378 -11.54211 -11.49497 -11.48589 -11.21821 -11.15852 -11.03042 -10.99129 -10.79244 -10.59029 -10.38256 -10.21588 -10.19582 -9.48173 -9.24006 -9.16202 -8.42040 -8.02308 -7.92233 -6.41509 -3.82244 1.76669 2.51882 3.01339 3.18233 3.26954 3.32862 3.90395 4.04689 4.08845 4.24247 4.24928 4.46133 4.58425 4.62776 4.73640 4.78100 4.87890 5.00363 5.12777 5.14611 5.21829 5.25565 5.30125 5.30657 5.32725 5.47298 5.48056 5.56436 5.67288 5.69833 5.71795 5.73780 5.76438 5.80246 5.86429 5.92831 5.95253 6.06920 6.08972 6.20293 6.27599 6.33612 6.45264 6.53095 7.16884 7.25318 7.32611 7.55522 8.05738 8.06366 8.61734 9.18234 9.54355 10.05970 10.76207 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002013 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.167744 B =13903.176235 C =14739.013523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C 0.528 3.472 4 O -0.538 6.538 5 N -0.723 5.723 6 C 0.128 3.872 7 C -0.106 4.106 8 H 0.089 0.911 9 C -0.125 4.125 10 C 0.033 3.967 11 N -0.494 5.494 12 C 0.037 3.963 13 C 0.442 3.558 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.050 3.950 25 C -0.167 4.167 26 C -0.146 4.146 27 C -0.105 4.105 28 C -0.108 4.108 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.109 0.891 44 H 0.040 0.960 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -24.841 -5.056 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.374 5.374 6 C 0.004 3.996 7 C -0.125 4.125 8 H 0.107 0.893 9 C -0.163 4.163 10 C -0.095 4.095 11 N -0.218 5.218 12 C -0.094 4.094 13 C 0.228 3.772 14 O -0.463 6.463 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.078 4.078 25 C -0.185 4.185 26 C -0.164 4.164 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.059 0.941 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.705 -24.898 -4.866 27.162 hybrid contribution -0.072 0.976 -0.409 1.060 sum -9.777 -23.922 -5.274 26.376 Atomic orbital electron populations 1.21794 0.92013 1.02931 1.02532 1.20650 0.97146 0.92297 0.96156 1.20321 0.80161 0.86616 0.81534 1.90693 1.37253 1.77355 1.36116 1.45972 1.52697 1.12604 1.26120 1.21399 0.99501 0.80733 0.97964 1.22370 0.95199 0.97294 0.97652 0.89252 1.22484 0.95816 0.97037 1.00964 1.22908 0.92769 0.94797 0.99032 1.64526 1.02083 1.02958 1.52245 1.22082 0.98232 0.89300 0.99833 1.19712 0.88761 0.83465 0.85308 1.90486 1.52955 1.54803 1.48070 1.41868 1.14434 1.08972 1.54729 1.19693 0.89989 0.95136 1.37956 0.87899 1.25268 0.99761 0.95840 0.97131 1.69618 1.35334 1.06043 1.43316 0.85855 0.81687 0.77727 0.79013 1.20416 1.20932 1.19400 1.23297 0.98441 0.90059 0.95957 1.23121 0.99178 0.98420 0.97755 1.23494 0.96974 0.98507 0.97379 1.21418 0.99075 1.00960 0.92754 1.22486 0.96796 0.98717 0.96572 0.91876 0.91238 0.92035 0.76628 0.91015 0.91384 0.91451 0.91217 0.93930 0.90461 0.93455 0.89156 0.77493 0.91881 0.87250 0.94135 0.85178 0.85395 0.90859 0.90107 0.90464 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.40 37.16 0.31 -0.51 16 2 C -0.06 -0.49 0.73 -155.76 -0.11 -0.60 16 3 C 0.53 5.97 6.54 -10.99 -0.07 5.89 16 4 O -0.54 -8.26 15.45 5.55 0.09 -8.17 16 5 N -0.72 -6.99 5.28 -60.30 -0.32 -7.31 16 6 C 0.13 1.48 5.01 -4.04 -0.02 1.46 16 7 C -0.11 -1.23 3.09 -88.76 -0.27 -1.51 16 8 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 9 C -0.12 -1.25 6.32 -25.37 -0.16 -1.41 16 10 C 0.03 0.41 6.70 -2.76 -0.02 0.39 16 11 N -0.49 -8.15 5.11 -231.72 -1.18 -9.33 16 12 C 0.04 0.67 5.31 -4.97 -0.03 0.64 16 13 C 0.44 10.44 7.42 -10.99 -0.08 10.36 16 14 O -0.58 -15.46 13.87 5.54 0.08 -15.38 16 15 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 16 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 20 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.05 0.81 5.04 -1.79 -0.01 0.80 16 25 C -0.17 -1.21 9.37 -35.78 -0.34 -1.55 16 26 C -0.15 -1.08 10.78 -35.77 -0.39 -1.46 16 27 C -0.11 -0.83 6.81 -26.83 -0.18 -1.02 16 28 C -0.11 -0.90 6.04 -25.01 -0.15 -1.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.40 2.86 7.83 -40.82 -0.32 2.54 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 35 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.78 7.99 -51.93 -0.41 0.37 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.11 2.12 6.45 -51.93 -0.33 1.79 16 44 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 45 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 50 H 0.09 0.92 6.92 -51.93 -0.36 0.57 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -33.05 400.46 -9.77 -42.82 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.35 Total: 11.03 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.76 Total: 2.45 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.84 Total: -54.94 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.05 -9.77 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.237 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds