Wall clock time and date at job start Tue Mar 31 2020 18:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.34459 * 2 1 4 4 O 1.21283 * 120.00200 * 239.29981 * 3 2 1 5 5 N 1.34776 * 119.99905 * 59.02905 * 3 2 1 6 6 C 1.46499 * 120.00133 * 180.27059 * 5 3 2 7 7 C 1.52999 * 109.47324 * 179.97438 * 6 5 3 8 8 H 1.08999 * 110.64108 * 54.29813 * 7 6 5 9 9 C 1.54598 * 110.72316 * 291.15068 * 7 6 5 10 10 C 1.53998 * 105.13739 * 219.68301 * 9 7 6 11 11 N 1.47896 * 107.05744 * 358.77217 * 10 9 7 12 12 C 1.46903 * 110.99762 * 145.84502 * 11 10 9 13 13 C 1.50700 * 109.47303 * 183.36466 * 12 11 10 14 14 O 1.21295 * 119.99944 * 353.86191 * 13 12 11 15 15 N 1.34776 * 120.00310 * 173.86395 * 13 12 11 16 16 C 1.37095 * 120.00340 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99818 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00202 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99759 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47050 * 90.00151 * 20 18 16 22 22 H 1.48498 * 109.47241 * 210.00174 * 20 18 16 23 23 H 1.48502 * 109.47058 * 330.00415 * 20 18 16 24 24 C 1.48726 * 105.94438 * 25.20600 * 11 10 9 25 25 C 1.51098 * 110.39015 * 122.29353 * 2 1 3 26 26 C 1.30801 * 110.95055 * 135.35757 * 25 2 1 27 27 C 1.51102 * 111.14766 * 359.94722 * 26 25 2 28 28 C 1.54633 * 104.72972 * 343.60002 * 27 26 25 29 29 H 1.08999 * 109.47236 * 60.69362 * 1 2 3 30 30 H 1.08997 * 109.47198 * 180.70146 * 1 2 3 31 31 H 1.08999 * 109.47041 * 300.69839 * 1 2 3 32 32 H 0.97002 * 120.00122 * 0.27497 * 5 3 2 33 33 H 1.08996 * 109.47198 * 300.00070 * 6 5 3 34 34 H 1.09005 * 109.46670 * 59.99997 * 6 5 3 35 35 H 1.08999 * 110.31020 * 338.59590 * 9 7 6 36 36 H 1.09002 * 110.30802 * 100.77134 * 9 7 6 37 37 H 1.08999 * 109.91288 * 118.12978 * 10 9 7 38 38 H 1.09002 * 109.91326 * 239.42012 * 10 9 7 39 39 H 1.09000 * 109.46931 * 303.36593 * 12 11 10 40 40 H 1.09003 * 109.47351 * 63.36272 * 12 11 10 41 41 H 0.97001 * 119.99561 * 359.97438 * 15 13 12 42 42 H 0.97009 * 119.99796 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.83853 * 202.57339 * 24 11 10 44 44 H 1.09001 * 110.59250 * 79.38206 * 24 11 10 45 45 H 1.08004 * 124.44664 * 315.36144 * 25 2 1 46 46 H 1.07992 * 124.39924 * 179.97438 * 26 25 2 47 47 H 1.08992 * 110.38789 * 224.78233 * 27 26 25 48 48 H 1.09005 * 110.47853 * 102.45547 * 27 26 25 49 49 H 1.09005 * 111.03274 * 266.59754 * 28 27 26 50 50 H 1.08998 * 111.03978 * 142.66184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9031 5 7 1.7250 2.2536 1.0008 6 6 2.2295 3.6290 0.9978 7 6 1.7113 4.3651 2.2349 8 1 1.9604 3.8144 3.1420 9 6 0.1857 4.5947 2.1359 10 6 -0.0450 6.0105 2.6962 11 7 1.2742 6.5317 3.1148 12 6 1.3615 7.9815 2.8941 13 6 2.7439 8.4620 3.2536 14 8 3.5393 7.6980 3.7584 15 7 3.0963 9.7407 3.0143 16 6 4.3537 10.1779 3.3419 17 1 5.0620 9.4977 3.7913 18 6 4.7172 11.4960 3.0947 19 7 3.8555 12.3236 2.5474 20 14 6.4307 12.0917 3.5404 21 1 7.3423 11.8848 2.3865 22 1 6.3801 13.5368 3.8784 23 1 6.9318 11.3269 4.7105 24 6 2.2796 5.8052 2.2943 25 6 2.0564 -0.7567 1.1972 26 6 3.0341 -1.5547 0.8533 27 6 3.3182 -1.4617 -0.6279 28 6 2.0686 -0.7742 -1.2255 29 1 -0.3634 0.5030 -0.8961 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5246 0.8837 32 1 1.1543 1.9480 1.7232 33 1 3.3193 3.6163 1.0120 34 1 1.8837 4.1408 0.0996 35 1 -0.1381 4.5418 1.0965 36 1 -0.3475 3.8584 2.7372 37 1 -0.4693 6.6511 1.9231 38 1 -0.7158 5.9654 3.5542 39 1 1.1614 8.2020 1.8456 40 1 0.6265 8.4890 3.5188 41 1 2.4603 10.3515 2.6103 42 1 4.1095 13.2438 2.3745 43 1 3.2556 5.8139 2.7797 44 1 2.3421 6.2356 1.2948 45 1 1.6753 -0.6516 2.2023 46 1 3.5678 -2.1963 1.5386 47 1 3.4440 -2.4571 -1.0536 48 1 4.2070 -0.8571 -0.8085 49 1 1.3444 -1.5116 -1.5718 50 1 2.3444 -0.0916 -2.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663607625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:01 Heat of formation + Delta-G solvation = -78.998311 kcal Electronic energy + Delta-G solvation = -28758.761994 eV Core-core repulsion = 24784.715730 eV Total energy + Delta-G solvation = -3974.046263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.65928 -40.71524 -39.37925 -38.50031 -36.26411 -35.84540 -33.54086 -33.16465 -32.21687 -30.40627 -29.80792 -28.54789 -26.87142 -25.93761 -25.35804 -23.05835 -22.32720 -21.34770 -21.00704 -20.75799 -19.88521 -19.76621 -18.10692 -17.91731 -17.26596 -16.82594 -16.67870 -16.36038 -16.24741 -16.15994 -15.69210 -15.66193 -15.24076 -14.84410 -14.49577 -14.36641 -14.09292 -13.99195 -13.73530 -13.53649 -13.25118 -13.19532 -12.94719 -12.91717 -12.82695 -12.75679 -12.43414 -12.40809 -12.21844 -12.13758 -12.10861 -12.02011 -11.90291 -11.69066 -11.51864 -11.47300 -11.03240 -10.27284 -10.15136 -10.02231 -9.83830 -9.32247 -8.48197 -5.96743 1.17556 1.36238 1.39974 1.52825 1.66695 2.03068 2.16331 2.27456 2.84559 3.18561 3.30029 3.49138 3.58303 3.67523 3.72282 3.84340 3.90077 4.08299 4.27325 4.29905 4.30709 4.32554 4.33679 4.45907 4.47102 4.55558 4.58113 4.67030 4.74797 4.80187 4.81886 4.82420 4.92902 4.97710 5.02009 5.09323 5.11243 5.22538 5.23178 5.29034 5.34121 5.39457 5.42526 5.51620 5.84595 5.92405 5.96247 6.11229 6.53070 6.58907 7.11334 7.22435 7.54366 8.10146 8.69274 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002013 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.167744 B =13903.176235 C =14739.013523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C 0.523 3.477 4 O -0.587 6.587 5 N -0.707 5.707 6 C 0.137 3.863 7 C -0.088 4.088 8 H 0.095 0.905 9 C -0.114 4.114 10 C 0.031 3.969 11 N -0.513 5.513 12 C 0.049 3.951 13 C 0.439 3.561 14 O -0.614 6.614 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.048 3.952 25 C -0.167 4.167 26 C -0.153 4.153 27 C -0.109 4.109 28 C -0.112 4.112 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.416 0.584 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.153 0.847 46 H 0.145 0.855 47 H 0.089 0.911 48 H 0.057 0.943 49 H 0.098 0.902 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 -26.285 -4.361 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C 0.310 3.690 4 O -0.467 6.467 5 N -0.359 5.359 6 C 0.012 3.988 7 C -0.108 4.108 8 H 0.113 0.887 9 C -0.152 4.152 10 C -0.097 4.097 11 N -0.237 5.237 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.500 6.500 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.080 4.080 25 C -0.185 4.185 26 C -0.171 4.171 27 C -0.146 4.146 28 C -0.150 4.150 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.171 0.829 46 H 0.163 0.837 47 H 0.107 0.893 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.029 -26.352 -4.153 29.264 hybrid contribution 0.642 1.393 -0.638 1.661 sum -11.387 -24.959 -4.791 27.849 Atomic orbital electron populations 1.21819 0.89879 1.04224 1.03046 1.20685 0.98738 0.89935 0.96628 1.20997 0.79292 0.87888 0.80809 1.90676 1.39484 1.78465 1.38047 1.45801 1.52327 1.11513 1.26282 1.21140 0.98128 0.81890 0.97634 1.22171 0.96580 0.94357 0.97666 0.88682 1.22485 0.93981 0.96490 1.02220 1.23056 0.90482 0.95936 1.00178 1.64492 1.04349 1.01878 1.53017 1.21965 0.94443 0.90736 1.01109 1.20765 0.90667 0.82445 0.83522 1.90469 1.54800 1.55541 1.49232 1.41942 1.13940 1.09852 1.55435 1.19643 0.91072 0.95658 1.39733 0.90347 1.26048 1.03401 0.95412 0.96544 1.69677 1.36752 1.06410 1.43306 0.84931 0.77199 0.77609 0.78623 1.19754 1.19423 1.19751 1.23128 0.97083 0.93142 0.94665 1.23320 0.99101 0.97832 0.98227 1.23686 0.97222 0.99135 0.97035 1.21440 0.98028 1.01353 0.93815 1.22514 0.97564 0.98770 0.96106 0.92516 0.89596 0.90374 0.74677 0.93466 0.92269 0.90385 0.87951 0.92978 0.88813 0.91746 0.87032 0.77064 0.91307 0.91574 0.95173 0.82925 0.83745 0.89254 0.92457 0.88365 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.40 71.98 0.60 -0.61 16 2 C -0.06 -0.84 0.73 -52.99 -0.04 -0.88 16 3 C 0.52 11.59 6.54 87.66 0.57 12.16 16 4 O -0.59 -18.79 15.45 -3.04 -0.05 -18.84 16 5 N -0.71 -12.68 5.28 -463.06 -2.45 -15.12 16 6 C 0.14 3.16 5.01 86.38 0.43 3.59 16 7 C -0.09 -1.96 3.09 -9.59 -0.03 -1.99 16 8 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 9 C -0.11 -1.88 6.32 31.48 0.20 -1.68 16 10 C 0.03 0.66 6.70 86.45 0.58 1.24 16 11 N -0.51 -16.40 5.11 -887.03 -4.53 -20.93 16 12 C 0.05 1.73 5.31 85.56 0.45 2.18 16 13 C 0.44 21.26 7.42 87.66 0.65 21.91 16 14 O -0.61 -34.26 13.87 -3.08 -0.04 -34.30 16 15 N -0.57 -30.03 5.29 -306.99 -1.62 -31.65 16 16 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 19 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 20 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.05 1.58 5.04 86.61 0.44 2.02 16 25 C -0.17 -2.02 9.37 25.98 0.24 -1.78 16 26 C -0.15 -2.00 10.78 25.98 0.28 -1.72 16 27 C -0.11 -1.69 6.81 30.53 0.21 -1.48 16 28 C -0.11 -1.80 6.04 31.71 0.19 -1.61 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.46 7.57 -2.39 -0.02 0.44 16 32 H 0.42 4.67 7.83 -92.71 -0.73 3.94 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.49 8.02 -2.38 -0.02 1.47 16 35 H 0.08 1.18 7.76 -2.39 -0.02 1.16 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.06 7.99 -2.39 -0.02 2.04 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 42 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 43 H 0.07 2.74 6.45 -2.39 -0.02 2.72 16 44 H 0.03 1.02 7.92 -2.39 -0.02 1.00 16 45 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.10 1.12 7.91 -2.38 -0.02 1.10 16 50 H 0.06 1.40 6.92 -2.39 -0.02 1.38 16 Total: -1.00 -75.63 400.46 -0.83 -76.46 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.51 Total: 36.01 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.06 Total: 12.73 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -8.32 Total: -117.76 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.09 Total: -53.14 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.63 -0.83 -76.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.543 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds