Wall clock time and date at job start Tue Mar 31 2020 19:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35647 * 117.00289 * 2 1 4 4 C 1.39337 * 120.54016 * 0.29672 * 3 2 1 5 5 C 1.38302 * 118.44093 * 180.21705 * 4 3 2 6 6 C 1.50701 * 120.27866 * 179.78488 * 5 4 3 7 7 C 1.38765 * 119.44327 * 359.51107 * 5 4 3 8 8 N 1.31378 * 121.06646 * 0.23017 * 7 5 4 9 9 C 1.32859 * 121.69700 * 0.02562 * 8 7 5 10 10 C 1.47830 * 119.78321 * 179.97438 * 9 8 7 11 11 O 1.21557 * 119.99868 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00124 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00297 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47478 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47419 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47610 * 180.02562 * 15 14 13 17 17 C 1.36932 * 120.00324 * 89.99839 * 16 15 14 18 18 H 1.08002 * 120.00272 * 217.15004 * 17 16 15 19 19 C 1.38806 * 119.99853 * 37.14733 * 17 16 15 20 20 N 1.31623 * 120.00305 * 21.26989 * 19 17 16 21 21 Si 1.86802 * 120.00071 * 201.26718 * 19 17 16 22 22 H 1.48501 * 109.47040 * 90.00173 * 21 19 17 23 23 H 1.48507 * 109.47113 * 209.99975 * 21 19 17 24 24 H 1.48494 * 109.47094 * 329.99944 * 21 19 17 25 25 C 1.46507 * 119.99650 * 270.00170 * 16 15 14 26 26 C 1.53005 * 109.46678 * 114.89931 * 25 16 15 27 27 C 1.53000 * 109.46866 * 234.89587 * 25 16 15 28 28 H 1.08993 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46697 * 300.00355 * 1 2 3 30 30 H 1.08996 * 109.46507 * 59.99986 * 1 2 3 31 31 H 1.08004 * 120.78051 * 0.02562 * 4 3 2 32 32 H 1.08999 * 109.46790 * 269.72075 * 6 5 4 33 33 H 1.08996 * 109.46861 * 29.72073 * 6 5 4 34 34 H 1.08997 * 109.47151 * 149.72422 * 6 5 4 35 35 H 1.08000 * 119.46743 * 180.25450 * 7 5 4 36 36 H 0.97000 * 120.00006 * 359.97438 * 12 10 9 37 37 H 1.09011 * 109.46937 * 300.00122 * 13 12 10 38 38 H 1.09000 * 109.47593 * 59.99745 * 13 12 10 39 39 H 1.08994 * 109.46964 * 299.99790 * 14 13 12 40 40 H 1.08999 * 109.47288 * 59.99743 * 14 13 12 41 41 H 1.09004 * 109.47506 * 300.00360 * 15 14 13 42 42 H 1.09000 * 109.47366 * 59.99737 * 15 14 13 43 43 H 0.96995 * 120.00514 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47320 * 354.90042 * 25 16 15 45 45 H 1.09002 * 109.47269 * 63.31223 * 26 25 16 46 46 H 1.09002 * 109.46456 * 183.30809 * 26 25 16 47 47 H 1.08998 * 109.47192 * 303.30615 * 26 25 16 48 48 H 1.09002 * 109.46826 * 61.62753 * 27 25 16 49 49 H 1.08998 * 109.46974 * 181.61833 * 27 25 16 50 50 H 1.08993 * 109.47651 * 301.62315 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2972 2.3843 0.0062 5 6 1.9698 3.5927 0.0013 6 6 1.2022 4.8896 0.0029 7 6 3.3574 3.6010 0.0008 8 7 4.0421 2.4798 0.0004 9 6 3.4411 1.2949 -0.0001 10 6 4.2532 0.0596 -0.0012 11 8 3.7074 -1.0266 -0.0022 12 7 5.5987 0.1377 -0.0012 13 6 6.4035 -1.0864 -0.0028 14 6 7.8890 -0.7202 -0.0018 15 6 8.7295 -1.9985 -0.0029 16 7 10.1519 -1.6479 -0.0012 17 6 10.8158 -1.4856 1.1854 18 1 11.5695 -0.7182 1.2819 19 6 10.5199 -2.3074 2.2642 20 7 9.9432 -3.4736 2.0645 21 14 10.9403 -1.7584 3.9995 22 1 9.7931 -1.0101 4.5734 23 1 11.2249 -2.9491 4.8401 24 1 12.1368 -0.8797 3.9645 25 6 10.8641 -1.4708 -1.2692 26 6 11.3093 -0.0133 -1.4048 27 6 12.0917 -2.3837 -1.2964 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2176 2.3527 0.0115 32 1 1.0168 5.2032 -1.0244 33 1 0.2515 4.7484 0.5169 34 1 1.7832 5.6551 0.5172 35 1 3.8831 4.5445 0.0012 36 1 6.0342 1.0044 -0.0008 37 1 6.1738 -1.6735 0.8865 38 1 6.1738 -1.6712 -0.8935 39 1 8.1190 -0.1330 -0.8908 40 1 8.1185 -0.1356 0.8891 41 1 8.4994 -2.5855 0.8863 42 1 8.5002 -2.5835 -0.8936 43 1 9.7361 -4.0478 2.8183 44 1 10.2023 -1.7270 -2.0965 45 1 12.0170 0.2258 -0.6110 46 1 11.7872 0.1319 -2.3736 47 1 10.4408 0.6407 -1.3265 48 1 11.7725 -3.4237 -1.2288 49 1 12.6374 -2.2310 -2.2275 50 1 12.7395 -2.1468 -0.4525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664513509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:44 Heat of formation + Delta-G solvation = -28.401660 kcal Electronic energy + Delta-G solvation = -28822.204936 eV Core-core repulsion = 24850.352709 eV Total energy + Delta-G solvation = -3971.852228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16376 -38.92470 -38.48755 -36.69374 -34.81266 -34.09626 -32.40217 -31.37816 -31.22041 -28.96054 -28.33351 -27.44832 -26.12147 -25.23076 -23.87390 -23.19244 -22.41849 -20.73260 -20.48164 -19.45300 -18.18721 -17.66339 -17.41340 -16.26144 -16.23896 -15.41021 -15.27801 -15.09370 -14.82708 -14.41448 -14.38220 -14.08952 -13.98120 -13.88664 -13.38885 -13.31352 -13.06748 -12.81583 -12.76932 -12.57688 -12.33272 -11.76146 -11.75235 -11.61824 -11.41999 -11.32591 -11.23404 -10.88161 -10.70837 -10.54814 -10.35947 -10.24566 -10.10402 -9.87717 -9.87201 -9.62862 -9.47895 -9.40570 -8.78755 -8.52748 -8.39672 -6.47835 -5.69722 -3.27616 0.42448 0.93575 2.79344 2.87098 3.33936 3.41746 3.49366 3.49674 3.73714 4.06201 4.19231 4.42024 4.54045 4.55665 4.62989 4.72341 4.80660 5.07898 5.08725 5.13842 5.22254 5.32957 5.44089 5.47817 5.57018 5.73424 5.79693 5.91956 6.01727 6.06099 6.16958 6.25751 6.39374 6.50157 6.52802 6.56675 6.77779 6.81127 6.83686 6.87274 6.90880 6.93622 7.22320 7.29179 7.40505 7.47554 7.78386 7.89760 7.91964 8.49601 8.61507 9.28525 9.91578 10.50182 11.29868 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.002413 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.120177 B =11602.199043 C =11843.329918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.141 3.859 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.114 4.114 7 C 0.057 3.943 8 N -0.415 5.415 9 C 0.041 3.959 10 C 0.565 3.435 11 O -0.521 6.521 12 N -0.707 5.707 13 C 0.121 3.879 14 C -0.145 4.145 15 C 0.151 3.849 16 N -0.579 5.579 17 C -0.250 4.250 18 H 0.059 0.941 19 C 0.011 3.989 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.162 3.838 26 C -0.154 4.154 27 C -0.145 4.145 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.407 0.593 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.024 0.976 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.028 0.972 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.467 14.953 -6.168 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.171 4.171 7 C -0.104 4.104 8 N -0.126 5.126 9 C -0.098 4.098 10 C 0.349 3.651 11 O -0.397 6.397 12 N -0.359 5.359 13 C -0.002 4.002 14 C -0.185 4.185 15 C 0.024 3.976 16 N -0.299 5.299 17 C -0.379 4.379 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.055 3.945 26 C -0.214 4.214 27 C -0.204 4.204 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.181 0.819 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.862 13.728 -6.055 24.102 hybrid contribution -0.842 0.939 1.014 1.619 sum -19.704 14.668 -5.041 25.076 Atomic orbital electron populations 1.23219 0.78634 1.04735 1.01072 1.86454 1.20816 1.24435 1.86271 1.20056 0.92311 0.85663 0.93001 1.21605 1.00856 0.91258 1.06947 1.20989 0.95268 0.95746 0.95921 1.20811 0.99881 0.93376 1.03076 1.22617 0.90557 0.96466 1.00750 1.67632 1.39729 0.97367 1.07851 1.20809 0.88642 0.92998 1.07314 1.17609 0.82536 0.87084 0.77865 1.90828 1.71792 1.27517 1.49537 1.45994 1.05344 1.11188 1.73328 1.21505 0.91110 0.85662 1.01940 1.22485 0.91625 1.02886 1.01524 1.20819 0.82775 0.92227 1.01828 1.43860 1.04044 1.81417 1.00625 1.18904 1.19677 1.11106 0.88261 0.92304 1.25148 1.00555 0.94315 0.98884 1.69982 1.45222 1.07864 1.29868 0.86456 0.78272 0.77735 0.85309 1.21403 1.21885 1.20394 1.20410 0.92756 0.92348 0.88981 1.22210 1.00626 0.99255 0.99263 1.22036 0.98893 1.00276 0.99190 0.87565 0.92565 0.92573 0.83743 0.90244 0.91068 0.90478 0.81853 0.75754 0.91430 0.91938 0.93219 0.91636 0.88546 0.95759 0.93649 0.93728 0.92999 0.94688 0.93699 0.93352 0.95260 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.14 16 2 O -0.27 -3.61 8.56 -40.59 -0.35 -3.96 16 3 C 0.14 1.81 6.71 -38.56 -0.26 1.55 16 4 C -0.18 -1.63 8.80 -39.15 -0.34 -1.97 16 5 C -0.08 -0.62 5.90 -104.40 -0.62 -1.23 16 6 C -0.11 -0.49 10.03 36.01 0.36 -0.13 16 7 C 0.06 0.55 10.85 -17.55 -0.19 0.36 16 8 N -0.41 -5.40 9.54 -9.71 -0.09 -5.50 16 9 C 0.04 0.61 6.76 -82.88 -0.56 0.05 16 10 C 0.57 9.96 7.80 -12.34 -0.10 9.86 16 11 O -0.52 -10.67 15.14 -16.63 -0.25 -10.92 16 12 N -0.71 -11.85 5.54 -61.25 -0.34 -12.19 16 13 C 0.12 2.21 5.67 -4.04 -0.02 2.19 16 14 C -0.14 -2.82 5.65 -26.73 -0.15 -2.97 16 15 C 0.15 3.47 5.28 -4.05 -0.02 3.44 16 16 N -0.58 -14.00 2.37 -165.66 -0.39 -14.40 16 17 C -0.25 -6.62 8.04 -15.06 -0.12 -6.74 16 18 H 0.06 1.58 7.14 -52.49 -0.37 1.21 16 19 C 0.01 0.30 4.96 -17.43 -0.09 0.22 16 20 N -0.89 -25.39 11.43 55.49 0.63 -24.75 16 21 Si 0.89 21.68 29.60 -169.99 -5.03 16.65 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.16 3.40 3.37 -67.92 -0.23 3.17 16 26 C -0.15 -2.88 9.19 37.16 0.34 -2.54 16 27 C -0.15 -2.99 9.11 37.16 0.34 -2.65 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 30 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 31 H 0.14 0.86 6.46 -52.48 -0.34 0.52 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.41 6.22 7.80 -40.82 -0.32 5.90 16 37 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.10 2.54 5.48 -51.93 -0.28 2.25 16 42 H 0.02 0.54 7.88 -51.93 -0.41 0.13 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.04 0.89 7.77 -51.93 -0.40 0.49 16 45 H 0.05 1.02 7.32 -51.93 -0.38 0.64 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -32.81 408.17 -8.66 -41.46 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.32 Total: 3.70 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.66 Total: 3.75 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.19 Total: -56.84 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.60 Total: -14.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.81 -8.66 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664513509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.062 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds