Wall clock time and date at job start Tue Mar 31 2020 19:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35647 * 117.00289 * 2 1 4 4 C 1.39337 * 120.54016 * 0.29672 * 3 2 1 5 5 C 1.38302 * 118.44093 * 180.21705 * 4 3 2 6 6 C 1.50701 * 120.27866 * 179.78488 * 5 4 3 7 7 C 1.38765 * 119.44327 * 359.51107 * 5 4 3 8 8 N 1.31378 * 121.06646 * 0.23017 * 7 5 4 9 9 C 1.32859 * 121.69700 * 0.02562 * 8 7 5 10 10 C 1.47830 * 119.78321 * 179.97438 * 9 8 7 11 11 O 1.21557 * 119.99868 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00124 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00297 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47478 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47419 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47610 * 180.02562 * 15 14 13 17 17 C 1.36932 * 120.00324 * 89.99839 * 16 15 14 18 18 H 1.08002 * 120.00272 * 217.15004 * 17 16 15 19 19 C 1.38806 * 119.99853 * 37.14733 * 17 16 15 20 20 N 1.31623 * 120.00305 * 21.26989 * 19 17 16 21 21 Si 1.86802 * 120.00071 * 201.26718 * 19 17 16 22 22 H 1.48501 * 109.47040 * 90.00173 * 21 19 17 23 23 H 1.48507 * 109.47113 * 209.99975 * 21 19 17 24 24 H 1.48494 * 109.47094 * 329.99944 * 21 19 17 25 25 C 1.46507 * 119.99650 * 270.00170 * 16 15 14 26 26 C 1.53005 * 109.46678 * 114.89931 * 25 16 15 27 27 C 1.53000 * 109.46866 * 234.89587 * 25 16 15 28 28 H 1.08993 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46697 * 300.00355 * 1 2 3 30 30 H 1.08996 * 109.46507 * 59.99986 * 1 2 3 31 31 H 1.08004 * 120.78051 * 0.02562 * 4 3 2 32 32 H 1.08999 * 109.46790 * 269.72075 * 6 5 4 33 33 H 1.08996 * 109.46861 * 29.72073 * 6 5 4 34 34 H 1.08997 * 109.47151 * 149.72422 * 6 5 4 35 35 H 1.08000 * 119.46743 * 180.25450 * 7 5 4 36 36 H 0.97000 * 120.00006 * 359.97438 * 12 10 9 37 37 H 1.09011 * 109.46937 * 300.00122 * 13 12 10 38 38 H 1.09000 * 109.47593 * 59.99745 * 13 12 10 39 39 H 1.08994 * 109.46964 * 299.99790 * 14 13 12 40 40 H 1.08999 * 109.47288 * 59.99743 * 14 13 12 41 41 H 1.09004 * 109.47506 * 300.00360 * 15 14 13 42 42 H 1.09000 * 109.47366 * 59.99737 * 15 14 13 43 43 H 0.96995 * 120.00514 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47320 * 354.90042 * 25 16 15 45 45 H 1.09002 * 109.47269 * 63.31223 * 26 25 16 46 46 H 1.09002 * 109.46456 * 183.30809 * 26 25 16 47 47 H 1.08998 * 109.47192 * 303.30615 * 26 25 16 48 48 H 1.09002 * 109.46826 * 61.62753 * 27 25 16 49 49 H 1.08998 * 109.46974 * 181.61833 * 27 25 16 50 50 H 1.08993 * 109.47651 * 301.62315 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2972 2.3843 0.0062 5 6 1.9698 3.5927 0.0013 6 6 1.2022 4.8896 0.0029 7 6 3.3574 3.6010 0.0008 8 7 4.0421 2.4798 0.0004 9 6 3.4411 1.2949 -0.0001 10 6 4.2532 0.0596 -0.0012 11 8 3.7074 -1.0266 -0.0022 12 7 5.5987 0.1377 -0.0012 13 6 6.4035 -1.0864 -0.0028 14 6 7.8890 -0.7202 -0.0018 15 6 8.7295 -1.9985 -0.0029 16 7 10.1519 -1.6479 -0.0012 17 6 10.8158 -1.4856 1.1854 18 1 11.5695 -0.7182 1.2819 19 6 10.5199 -2.3074 2.2642 20 7 9.9432 -3.4736 2.0645 21 14 10.9403 -1.7584 3.9995 22 1 9.7931 -1.0101 4.5734 23 1 11.2249 -2.9491 4.8401 24 1 12.1368 -0.8797 3.9645 25 6 10.8641 -1.4708 -1.2692 26 6 11.3093 -0.0133 -1.4048 27 6 12.0917 -2.3837 -1.2964 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2176 2.3527 0.0115 32 1 1.0168 5.2032 -1.0244 33 1 0.2515 4.7484 0.5169 34 1 1.7832 5.6551 0.5172 35 1 3.8831 4.5445 0.0012 36 1 6.0342 1.0044 -0.0008 37 1 6.1738 -1.6735 0.8865 38 1 6.1738 -1.6712 -0.8935 39 1 8.1190 -0.1330 -0.8908 40 1 8.1185 -0.1356 0.8891 41 1 8.4994 -2.5855 0.8863 42 1 8.5002 -2.5835 -0.8936 43 1 9.7361 -4.0478 2.8183 44 1 10.2023 -1.7270 -2.0965 45 1 12.0170 0.2258 -0.6110 46 1 11.7872 0.1319 -2.3736 47 1 10.4408 0.6407 -1.3265 48 1 11.7725 -3.4237 -1.2288 49 1 12.6374 -2.2310 -2.2275 50 1 12.7395 -2.1468 -0.4525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664513509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:43 Heat of formation + Delta-G solvation = -48.712107 kcal Electronic energy + Delta-G solvation = -28823.085664 eV Core-core repulsion = 24850.352709 eV Total energy + Delta-G solvation = -3972.732955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.03721 -40.20453 -39.30684 -38.49187 -36.32666 -34.83751 -34.25708 -33.05809 -32.04874 -30.58082 -29.07085 -28.27680 -27.71411 -26.94213 -25.11487 -24.36065 -23.35877 -22.36191 -21.71828 -21.28321 -19.23205 -18.55800 -18.30000 -18.09944 -17.15576 -16.94785 -16.65927 -16.43480 -16.25479 -15.78692 -15.60930 -15.15166 -15.08899 -14.74453 -14.67840 -14.54851 -14.44035 -14.03474 -13.61639 -13.57027 -13.27221 -13.24112 -13.13396 -13.00715 -12.83451 -12.70421 -12.51887 -12.42837 -12.41121 -12.34088 -12.13014 -11.89812 -11.69853 -11.33540 -11.31772 -11.19373 -10.67599 -10.54874 -10.45549 -10.13630 -9.48019 -8.48302 -7.74847 -5.36399 -0.43016 0.18161 1.45396 1.48895 1.55359 1.69871 2.07284 2.18315 2.54192 2.75529 3.17157 3.31354 3.51584 3.62537 3.68290 3.88492 4.03681 4.17070 4.21137 4.23044 4.32325 4.34635 4.37386 4.53164 4.59377 4.64428 4.71049 4.73704 4.80826 4.82862 4.85945 4.97089 4.99489 5.09875 5.14055 5.16557 5.17733 5.21937 5.24214 5.43665 5.45963 5.49237 5.64358 5.70315 5.76630 5.90780 6.17869 6.43779 6.55016 6.78210 7.18674 7.25015 7.95957 8.48221 9.20494 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.002413 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.120177 B =11602.199043 C =11843.329918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.131 3.869 4 C -0.176 4.176 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.052 3.948 8 N -0.435 5.435 9 C -0.005 4.005 10 C 0.561 3.439 11 O -0.562 6.562 12 N -0.703 5.703 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.151 3.849 16 N -0.593 5.593 17 C -0.243 4.243 18 H 0.056 0.944 19 C -0.039 4.039 20 N -0.918 5.918 21 Si 0.947 3.053 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.268 1.268 25 C 0.151 3.849 26 C -0.142 4.142 27 C -0.136 4.136 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.415 0.585 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.247 0.753 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.045 0.955 48 H 0.024 0.976 49 H 0.066 0.934 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.927 18.623 -7.187 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.079 3.921 4 C -0.202 4.202 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.111 4.111 8 N -0.146 5.146 9 C -0.141 4.141 10 C 0.347 3.653 11 O -0.441 6.441 12 N -0.354 5.354 13 C 0.010 3.990 14 C -0.160 4.160 15 C 0.024 3.976 16 N -0.314 5.314 17 C -0.373 4.373 18 H 0.074 0.926 19 C -0.236 4.236 20 N -0.563 5.563 21 Si 0.776 3.224 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.193 1.193 25 C 0.045 3.955 26 C -0.201 4.201 27 C -0.195 4.195 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.196 0.804 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.212 0.788 36 H 0.251 0.749 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.085 0.915 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.307 17.423 -7.092 27.681 hybrid contribution -0.482 -0.080 1.244 1.337 sum -20.790 17.343 -5.849 27.699 Atomic orbital electron populations 1.23530 0.76083 1.05876 1.03022 1.86396 1.23676 1.25497 1.86390 1.20244 0.91955 0.86799 0.93052 1.21991 1.02351 0.90081 1.05740 1.21479 0.94899 0.97137 0.92459 1.20951 1.00206 0.91302 1.04492 1.23279 0.91803 0.96390 0.99620 1.67530 1.40746 0.97663 1.08663 1.20356 0.89337 0.92367 1.12023 1.18159 0.82543 0.88013 0.76581 1.90779 1.72461 1.29369 1.51478 1.45854 1.05391 1.10776 1.73423 1.21192 0.90696 0.86262 1.00860 1.22126 0.91549 1.00879 1.01472 1.20696 0.83173 0.93431 1.00304 1.44087 1.04578 1.81484 1.01275 1.19046 1.18881 1.10138 0.89264 0.92629 1.25758 1.01463 0.94504 1.01862 1.70116 1.47099 1.08923 1.30158 0.85582 0.78116 0.77045 0.81649 1.21720 1.22495 1.19273 1.20673 0.92874 0.94109 0.87805 1.22055 1.00483 0.97056 1.00544 1.21943 0.98664 0.98666 1.00237 0.87071 0.90611 0.90414 0.80380 0.88587 0.89491 0.88983 0.78842 0.74857 0.93695 0.91974 0.91509 0.93121 0.91980 0.95453 0.94332 0.92531 0.94388 0.91455 0.93564 0.95691 0.91539 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.24 16 2 O -0.31 -8.39 8.56 -68.63 -0.59 -8.98 16 3 C 0.13 3.31 6.71 22.93 0.15 3.46 16 4 C -0.18 -2.69 8.80 22.55 0.20 -2.49 16 5 C -0.06 -0.72 5.90 -19.72 -0.12 -0.84 16 6 C -0.11 -0.41 10.03 71.24 0.71 0.30 16 7 C 0.05 0.87 10.85 84.89 0.92 1.79 16 8 N -0.43 -11.09 9.54 -184.63 -1.76 -12.85 16 9 C 0.00 -0.15 6.76 41.93 0.28 0.14 16 10 C 0.56 20.83 7.80 86.78 0.68 21.51 16 11 O -0.56 -24.53 15.14 17.09 0.26 -24.27 16 12 N -0.70 -24.57 5.54 -465.99 -2.58 -27.15 16 13 C 0.13 5.13 5.67 86.38 0.49 5.62 16 14 C -0.12 -4.76 5.65 30.59 0.17 -4.59 16 15 C 0.15 7.15 5.28 86.38 0.46 7.60 16 16 N -0.59 -28.95 2.37 -678.03 -1.61 -30.56 16 17 C -0.24 -13.04 8.04 84.03 0.68 -12.36 16 18 H 0.06 3.00 7.14 -2.91 -0.02 2.98 16 19 C -0.04 -2.18 4.96 84.86 0.42 -1.76 16 20 N -0.92 -54.57 11.43 21.65 0.25 -54.32 16 21 Si 0.95 45.58 29.60 68.60 2.03 47.61 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.15 6.19 3.37 44.99 0.15 6.35 16 26 C -0.14 -4.99 9.19 71.98 0.66 -4.33 16 27 C -0.14 -5.50 9.11 71.98 0.66 -4.84 16 28 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 0.72 7.68 -2.39 -0.02 0.71 16 30 H 0.08 0.71 7.71 -2.39 -0.02 0.69 16 31 H 0.18 1.39 6.46 -2.91 -0.02 1.37 16 32 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.09 0.13 8.09 -2.39 -0.02 0.11 16 34 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 35 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.41 13.00 7.80 -92.71 -0.72 12.27 16 37 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 3.43 5.48 -2.38 -0.01 3.42 16 42 H 0.03 1.24 7.88 -2.39 -0.02 1.22 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.06 2.18 7.77 -2.39 -0.02 2.16 16 45 H 0.04 1.42 7.32 -2.39 -0.02 1.40 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.04 1.64 7.50 -2.39 -0.02 1.62 16 Total: -1.00 -75.73 408.17 3.84 -71.89 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.21 Total: 21.84 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.63 Total: 16.80 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -5.70 Total: -124.89 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.33 Total: -33.25 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.73 3.84 -71.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664513509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.179 kcal (2) G-P(sol) polarization free energy of solvation -75.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds