Wall clock time and date at job start Tue Mar 31 2020 19:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40193 * 120.36661 * 2 1 4 4 C 1.35353 * 119.94464 * 179.97438 * 3 2 1 5 5 N 1.35760 * 120.70273 * 359.97438 * 4 3 2 6 6 C 1.46498 * 119.62642 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47794 * 270.02876 * 6 5 4 8 8 O 1.21283 * 119.99416 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00193 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46743 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47405 * 180.02562 * 12 11 10 14 14 C 1.36938 * 120.00043 * 269.99942 * 13 12 11 15 15 H 1.08001 * 119.99964 * 141.90442 * 14 13 12 16 16 C 1.38810 * 119.99779 * 321.90997 * 14 13 12 17 17 N 1.31622 * 120.00253 * 338.45791 * 16 14 13 18 18 Si 1.86797 * 120.00048 * 158.45896 * 16 14 13 19 19 H 1.48497 * 109.47261 * 59.99876 * 18 16 14 20 20 H 1.48499 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47277 * 299.99692 * 18 16 14 22 22 C 1.46500 * 120.00198 * 89.99387 * 13 12 11 23 23 C 1.53001 * 109.46843 * 122.24618 * 22 13 12 24 24 C 1.53000 * 109.47168 * 242.24076 * 22 13 12 25 25 C 1.34663 * 120.75308 * 0.02562 * 5 4 3 26 26 O 1.22063 * 119.98884 * 179.97438 * 25 5 4 27 27 C 1.36406 * 120.36332 * 180.26314 * 2 1 3 28 28 H 1.08996 * 109.46780 * 89.99861 * 1 2 3 29 29 H 1.08995 * 109.47314 * 210.00038 * 1 2 3 30 30 H 1.09000 * 109.46829 * 330.00536 * 1 2 3 31 31 H 1.07992 * 120.02981 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.64942 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47027 * 30.02810 * 6 5 4 34 34 H 1.09001 * 109.47497 * 150.02550 * 6 5 4 35 35 H 0.96999 * 120.00220 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47041 * 300.00448 * 10 9 7 37 37 H 1.09001 * 109.46868 * 59.99812 * 10 9 7 38 38 H 1.08991 * 109.47382 * 300.00003 * 11 10 9 39 39 H 1.09003 * 109.47273 * 60.00532 * 11 10 9 40 40 H 1.09004 * 109.47102 * 299.99666 * 12 11 10 41 41 H 1.08995 * 109.47460 * 59.99770 * 12 11 10 42 42 H 0.96996 * 120.00100 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47429 * 2.24803 * 22 13 12 44 44 H 1.08996 * 109.47267 * 65.40381 * 23 22 13 45 45 H 1.09006 * 109.46786 * 185.40270 * 23 22 13 46 46 H 1.09000 * 109.47225 * 305.39954 * 23 22 13 47 47 H 1.08999 * 109.46978 * 60.44393 * 24 22 13 48 48 H 1.09002 * 109.46890 * 180.43370 * 24 22 13 49 49 H 1.08992 * 109.47586 * 300.44022 * 24 22 13 50 50 H 1.07998 * 120.34973 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2539 0.0273 0.0016 6 6 5.7187 0.0440 0.0016 7 6 6.2212 0.0492 -1.4192 8 8 5.4331 0.0393 -2.3410 9 7 7.5461 0.0647 -1.6654 10 6 8.0345 0.0692 -3.0466 11 6 9.5644 0.0868 -3.0465 12 6 10.0744 0.0921 -4.4890 13 7 11.5393 0.1083 -4.4890 14 6 12.2108 1.3017 -4.4893 15 1 13.1172 1.4115 -3.9122 16 6 11.7266 2.3704 -5.2311 17 7 10.9081 2.1546 -6.2391 18 14 12.2365 4.1147 -4.7990 19 1 13.7120 4.2408 -4.9093 20 1 11.5875 5.0666 -5.7359 21 1 11.8158 4.4233 -3.4087 22 6 12.2859 -1.1522 -4.4885 23 6 13.2080 -1.1991 -5.7086 24 6 13.1239 -1.2482 -3.2120 25 6 3.6017 -1.1509 0.0016 26 8 4.2312 -2.1967 0.0021 27 6 2.1966 -1.1769 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6823 2.1486 -0.0004 32 1 4.1104 2.1342 0.0001 33 1 6.0719 0.9383 0.5150 34 1 6.0923 -0.8415 0.5158 35 1 8.1764 0.0722 -0.9281 36 1 7.6818 -0.8255 -3.5596 37 1 7.6606 0.9543 -3.5613 38 1 9.9175 0.9812 -2.5334 39 1 9.9379 -0.7986 -2.5319 40 1 9.7214 -0.8023 -5.0024 41 1 9.7009 0.9775 -5.0032 42 1 10.5695 2.9014 -6.7573 43 1 11.5875 -1.9881 -4.5286 44 1 13.9668 -0.4217 -5.6206 45 1 13.6915 -2.1747 -5.7612 46 1 12.6224 -1.0347 -6.6131 47 1 12.4664 -1.2226 -2.3431 48 1 13.6852 -2.1825 -3.2154 49 1 13.8168 -0.4081 -3.1682 50 1 1.6683 -2.1189 -0.0093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664543330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:49 Heat of formation + Delta-G solvation = -27.776850 kcal Electronic energy + Delta-G solvation = -28635.624869 eV Core-core repulsion = 24663.799735 eV Total energy + Delta-G solvation = -3971.825134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.66624 -39.40033 -37.18707 -36.81433 -35.57914 -34.96482 -32.54099 -31.74564 -30.68941 -29.71108 -28.82382 -27.18337 -26.18661 -25.10204 -23.93007 -23.17686 -21.85249 -20.98306 -20.41676 -19.52054 -17.81177 -17.72453 -17.47444 -16.36071 -16.23195 -15.60312 -15.50631 -15.25599 -14.96331 -14.47517 -14.29937 -14.22729 -14.09009 -13.75628 -13.54128 -13.41749 -12.99629 -12.84630 -12.61719 -12.45840 -12.34480 -11.99731 -11.88514 -11.69710 -11.52301 -11.46106 -11.31267 -10.98602 -10.77589 -10.66208 -10.47064 -10.38638 -10.20109 -10.10741 -9.95506 -9.71556 -9.60310 -9.49393 -8.95482 -8.47582 -8.16693 -6.55211 -5.78853 -3.36819 0.60674 1.69032 2.26978 2.52459 3.15452 3.33796 3.40756 3.41477 3.55526 4.24589 4.33933 4.45528 4.46801 4.60777 4.73808 4.83189 4.97198 5.08628 5.20281 5.21999 5.28637 5.35350 5.50119 5.62540 5.70750 5.75116 5.84420 5.94782 6.00203 6.13637 6.17487 6.29164 6.29435 6.36499 6.37833 6.44145 6.65076 6.71058 6.71984 6.79717 6.80805 6.86136 7.09443 7.20227 7.34960 7.48588 7.65616 7.83585 7.88389 8.15989 8.53319 9.19984 9.82551 10.42234 11.21255 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002209 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.626773 B =12673.224508 C =13650.634405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.069 3.931 7 C 0.496 3.504 8 O -0.530 6.530 9 N -0.719 5.719 10 C 0.122 3.878 11 C -0.145 4.145 12 C 0.152 3.848 13 N -0.579 5.579 14 C -0.253 4.253 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.162 3.838 23 C -0.145 4.145 24 C -0.153 4.153 25 C 0.522 3.478 26 O -0.552 6.552 27 C -0.249 4.249 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.051 0.949 47 H 0.042 0.958 48 H 0.035 0.965 49 H 0.053 0.947 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 -1.248 15.382 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.254 4.254 4 C 0.019 3.981 5 N -0.191 5.191 6 C -0.057 4.057 7 C 0.279 3.721 8 O -0.407 6.407 9 N -0.371 5.371 10 C -0.002 4.002 11 C -0.186 4.186 12 C 0.025 3.975 13 N -0.299 5.299 14 C -0.383 4.383 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.055 3.945 23 C -0.204 4.204 24 C -0.212 4.212 25 C 0.324 3.676 26 O -0.434 6.434 27 C -0.270 4.270 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.721 -1.836 14.538 21.492 hybrid contribution 0.622 1.140 0.469 1.381 sum -15.100 -0.696 15.007 21.300 Atomic orbital electron populations 1.20927 0.90381 1.03394 1.03215 1.20206 0.96757 0.92676 0.89224 1.20512 0.92338 0.98923 1.13661 1.21903 0.93647 0.89513 0.92997 1.45034 1.07238 1.07299 1.59560 1.21831 0.79723 1.07284 0.96826 1.20621 0.83278 0.77269 0.90899 1.90757 1.55262 1.48963 1.45685 1.46092 1.06104 1.74453 1.10414 1.21522 0.95910 1.02047 0.80686 1.22507 0.90897 1.01507 1.03662 1.20776 0.84292 1.01648 0.90788 1.43828 1.00155 1.00707 1.85180 1.18852 1.09019 0.88194 1.22277 0.92355 1.25180 0.99896 0.98915 0.94780 1.69997 1.35463 1.30348 1.16978 0.86536 0.78333 0.85077 0.77802 1.20809 1.21712 1.21039 1.20421 0.92637 0.89025 0.92443 1.22057 1.00133 0.98587 0.99651 1.22175 1.00144 0.99696 0.99218 1.17089 0.89369 0.82431 0.78671 1.90958 1.69156 1.30269 1.53054 1.21906 0.92240 0.99555 1.13322 0.90048 0.90859 0.90794 0.83728 0.82135 0.86075 0.85284 0.76551 0.91910 0.91404 0.91604 0.93142 0.95692 0.88824 0.93555 0.93700 0.92782 0.95279 0.93007 0.93910 0.94587 0.92790 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.03 36.01 0.36 -0.32 16 2 C 0.02 0.13 5.89 -104.54 -0.62 -0.48 16 3 C -0.23 -1.78 9.71 -39.88 -0.39 -2.17 16 4 C 0.15 1.24 10.28 -16.84 -0.17 1.06 16 5 N -0.48 -5.48 2.07 -121.06 -0.25 -5.73 16 6 C 0.07 0.68 5.81 -5.20 -0.03 0.65 16 7 C 0.50 6.97 7.89 -10.99 -0.09 6.89 16 8 O -0.53 -9.89 16.43 5.55 0.09 -9.80 16 9 N -0.72 -9.47 5.56 -60.29 -0.33 -9.81 16 10 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 11 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 12 C 0.15 3.35 5.27 -4.04 -0.02 3.32 16 13 N -0.58 -13.48 2.36 -165.66 -0.39 -13.87 16 14 C -0.25 -6.50 8.23 -15.06 -0.12 -6.63 16 15 H 0.06 1.51 6.95 -52.49 -0.36 1.15 16 16 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 17 N -0.89 -24.67 11.52 55.49 0.64 -24.03 16 18 Si 0.89 20.86 29.60 -169.99 -5.03 15.83 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.16 3.30 3.36 -67.93 -0.23 3.07 16 23 C -0.15 -2.94 9.03 37.16 0.34 -2.60 16 24 C -0.15 -2.76 9.20 37.16 0.34 -2.42 16 25 C 0.52 7.45 7.40 -15.44 -0.11 7.34 16 26 O -0.55 -9.89 16.64 4.86 0.08 -9.81 16 27 C -0.25 -2.87 9.65 -39.38 -0.38 -3.25 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.16 0.82 8.04 -52.49 -0.42 0.40 16 33 H 0.12 0.65 8.01 -51.93 -0.42 0.23 16 34 H 0.13 1.25 7.39 -51.93 -0.38 0.86 16 35 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 41 H 0.09 2.36 5.56 -51.93 -0.29 2.07 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.04 0.88 7.78 -51.93 -0.40 0.47 16 44 H 0.05 1.15 7.80 -51.93 -0.40 0.75 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 1.03 7.06 -51.93 -0.37 0.67 16 50 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -34.93 412.40 -8.80 -43.73 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.43 Total: 3.32 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.38 Total: 3.95 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.34 Total: -53.44 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.61 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.93 -8.80 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664543330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.954 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds