Wall clock time and date at job start Tue Mar 31 2020 19:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40193 * 120.36661 * 2 1 4 4 C 1.35353 * 119.94464 * 179.97438 * 3 2 1 5 5 N 1.35760 * 120.70273 * 359.97438 * 4 3 2 6 6 C 1.46498 * 119.62642 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47794 * 270.02876 * 6 5 4 8 8 O 1.21283 * 119.99416 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00193 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46743 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47405 * 180.02562 * 12 11 10 14 14 C 1.36938 * 120.00043 * 269.99942 * 13 12 11 15 15 H 1.08001 * 119.99964 * 141.90442 * 14 13 12 16 16 C 1.38810 * 119.99779 * 321.90997 * 14 13 12 17 17 N 1.31622 * 120.00253 * 338.45791 * 16 14 13 18 18 Si 1.86797 * 120.00048 * 158.45896 * 16 14 13 19 19 H 1.48497 * 109.47261 * 59.99876 * 18 16 14 20 20 H 1.48499 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47277 * 299.99692 * 18 16 14 22 22 C 1.46500 * 120.00198 * 89.99387 * 13 12 11 23 23 C 1.53001 * 109.46843 * 122.24618 * 22 13 12 24 24 C 1.53000 * 109.47168 * 242.24076 * 22 13 12 25 25 C 1.34663 * 120.75308 * 0.02562 * 5 4 3 26 26 O 1.22063 * 119.98884 * 179.97438 * 25 5 4 27 27 C 1.36406 * 120.36332 * 180.26314 * 2 1 3 28 28 H 1.08996 * 109.46780 * 89.99861 * 1 2 3 29 29 H 1.08995 * 109.47314 * 210.00038 * 1 2 3 30 30 H 1.09000 * 109.46829 * 330.00536 * 1 2 3 31 31 H 1.07992 * 120.02981 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.64942 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47027 * 30.02810 * 6 5 4 34 34 H 1.09001 * 109.47497 * 150.02550 * 6 5 4 35 35 H 0.96999 * 120.00220 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47041 * 300.00448 * 10 9 7 37 37 H 1.09001 * 109.46868 * 59.99812 * 10 9 7 38 38 H 1.08991 * 109.47382 * 300.00003 * 11 10 9 39 39 H 1.09003 * 109.47273 * 60.00532 * 11 10 9 40 40 H 1.09004 * 109.47102 * 299.99666 * 12 11 10 41 41 H 1.08995 * 109.47460 * 59.99770 * 12 11 10 42 42 H 0.96996 * 120.00100 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47429 * 2.24803 * 22 13 12 44 44 H 1.08996 * 109.47267 * 65.40381 * 23 22 13 45 45 H 1.09006 * 109.46786 * 185.40270 * 23 22 13 46 46 H 1.09000 * 109.47225 * 305.39954 * 23 22 13 47 47 H 1.08999 * 109.46978 * 60.44393 * 24 22 13 48 48 H 1.09002 * 109.46890 * 180.43370 * 24 22 13 49 49 H 1.08992 * 109.47586 * 300.44022 * 24 22 13 50 50 H 1.07998 * 120.34973 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2539 0.0273 0.0016 6 6 5.7187 0.0440 0.0016 7 6 6.2212 0.0492 -1.4192 8 8 5.4331 0.0393 -2.3410 9 7 7.5461 0.0647 -1.6654 10 6 8.0345 0.0692 -3.0466 11 6 9.5644 0.0868 -3.0465 12 6 10.0744 0.0921 -4.4890 13 7 11.5393 0.1083 -4.4890 14 6 12.2108 1.3017 -4.4893 15 1 13.1172 1.4115 -3.9122 16 6 11.7266 2.3704 -5.2311 17 7 10.9081 2.1546 -6.2391 18 14 12.2365 4.1147 -4.7990 19 1 13.7120 4.2408 -4.9093 20 1 11.5875 5.0666 -5.7359 21 1 11.8158 4.4233 -3.4087 22 6 12.2859 -1.1522 -4.4885 23 6 13.2080 -1.1991 -5.7086 24 6 13.1239 -1.2482 -3.2120 25 6 3.6017 -1.1509 0.0016 26 8 4.2312 -2.1967 0.0021 27 6 2.1966 -1.1769 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6823 2.1486 -0.0004 32 1 4.1104 2.1342 0.0001 33 1 6.0719 0.9383 0.5150 34 1 6.0923 -0.8415 0.5158 35 1 8.1764 0.0722 -0.9281 36 1 7.6818 -0.8255 -3.5596 37 1 7.6606 0.9543 -3.5613 38 1 9.9175 0.9812 -2.5334 39 1 9.9379 -0.7986 -2.5319 40 1 9.7214 -0.8023 -5.0024 41 1 9.7009 0.9775 -5.0032 42 1 10.5695 2.9014 -6.7573 43 1 11.5875 -1.9881 -4.5286 44 1 13.9668 -0.4217 -5.6206 45 1 13.6915 -2.1747 -5.7612 46 1 12.6224 -1.0347 -6.6131 47 1 12.4664 -1.2226 -2.3431 48 1 13.6852 -2.1825 -3.2154 49 1 13.8168 -0.4081 -3.1682 50 1 1.6683 -2.1189 -0.0093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664543330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:48 Heat of formation + Delta-G solvation = -49.971295 kcal Electronic energy + Delta-G solvation = -28636.587293 eV Core-core repulsion = 24663.799735 eV Total energy + Delta-G solvation = -3972.787557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53010 -40.55267 -38.51599 -38.11611 -36.58147 -36.11651 -34.28868 -33.31174 -31.53597 -30.73190 -30.18058 -28.14687 -27.74022 -26.74530 -24.75738 -24.66944 -22.71140 -22.42968 -21.60554 -21.28377 -18.73711 -18.55156 -18.47959 -18.11828 -17.06730 -17.01679 -16.71185 -16.60351 -16.33347 -15.85921 -15.70097 -15.20301 -15.06823 -15.00851 -14.73452 -14.50924 -14.17993 -14.07876 -13.69028 -13.41225 -13.28616 -13.24895 -13.16664 -13.01299 -12.87652 -12.84409 -12.68294 -12.49978 -12.46654 -12.35438 -12.15962 -11.92495 -11.71431 -11.36419 -11.32989 -11.21365 -11.10602 -10.59902 -10.45018 -10.20630 -9.00201 -8.47539 -7.75678 -5.37621 -0.13476 0.90254 1.42356 1.45790 1.48248 1.49796 1.55916 2.14001 2.54582 2.68782 3.30299 3.56850 3.61602 3.66134 3.73199 3.87200 4.07584 4.15006 4.16115 4.28671 4.33154 4.35619 4.39256 4.50335 4.63175 4.71869 4.78110 4.79652 4.82486 4.89006 4.94451 4.96887 5.08667 5.09470 5.15805 5.20370 5.22500 5.23452 5.35889 5.47879 5.48034 5.61783 5.64852 5.68174 5.76146 5.88583 6.04026 6.41678 6.54670 6.94914 7.09631 7.24847 7.94733 8.48585 9.20078 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002209 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.626773 B =12673.224508 C =13650.634405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.231 4.231 4 C 0.138 3.862 5 N -0.484 5.484 6 C 0.074 3.926 7 C 0.493 3.507 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.151 3.849 13 N -0.592 5.592 14 C -0.247 4.247 15 H 0.057 0.943 16 C -0.038 4.038 17 N -0.919 5.919 18 Si 0.949 3.051 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.275 1.275 22 C 0.151 3.849 23 C -0.137 4.137 24 C -0.141 4.141 25 C 0.502 3.498 26 O -0.611 6.611 27 C -0.292 4.292 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.182 0.818 32 H 0.201 0.799 33 H 0.178 0.822 34 H 0.131 0.869 35 H 0.419 0.581 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.060 0.940 42 H 0.248 0.752 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.022 0.978 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.828 0.122 17.879 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.253 4.253 4 C 0.012 3.988 5 N -0.193 5.193 6 C -0.051 4.051 7 C 0.279 3.721 8 O -0.462 6.462 9 N -0.360 5.360 10 C 0.010 3.990 11 C -0.161 4.161 12 C 0.024 3.976 13 N -0.313 5.313 14 C -0.377 4.377 15 H 0.074 0.926 16 C -0.235 4.235 17 N -0.563 5.563 18 Si 0.778 3.222 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.201 1.201 22 C 0.045 3.955 23 C -0.196 4.196 24 C -0.200 4.200 25 C 0.307 3.693 26 O -0.500 6.500 27 C -0.313 4.313 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.200 0.800 32 H 0.218 0.782 33 H 0.195 0.805 34 H 0.149 0.851 35 H 0.256 0.744 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.057 0.943 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.994 -0.443 17.096 23.415 hybrid contribution 0.668 0.722 -0.339 1.040 sum -15.326 0.279 16.756 22.710 Atomic orbital electron populations 1.21040 0.87920 1.04929 1.04018 1.20653 0.98568 0.92068 0.85849 1.21066 0.92419 0.99866 1.11921 1.22695 0.94496 0.89699 0.91891 1.45088 1.07945 1.07504 1.58752 1.22021 0.79113 1.10062 0.93872 1.21368 0.82753 0.75670 0.92266 1.90735 1.56474 1.51264 1.47708 1.45867 1.06588 1.73922 1.09581 1.21124 0.94898 1.00540 0.82408 1.22120 0.91456 1.01879 1.00600 1.20675 0.84021 0.99839 0.93077 1.44053 1.00653 1.01199 1.85421 1.19013 1.08587 0.89121 1.21014 0.92589 1.25810 1.00632 1.02036 0.94977 1.70143 1.37252 1.30649 1.18297 0.85635 0.77854 0.81179 0.77540 1.20501 1.22607 1.20099 1.20670 0.93038 0.88045 0.93751 1.21971 0.99336 0.99958 0.98320 1.22016 0.99642 1.00569 0.97747 1.17534 0.90361 0.82663 0.78723 1.90898 1.70254 1.32210 1.56588 1.21909 0.91541 1.00843 1.17037 0.89334 0.90389 0.88273 0.80038 0.78213 0.80497 0.85094 0.74378 0.93270 0.93305 0.92141 0.91515 0.96093 0.92201 0.94317 0.92676 0.94460 0.91771 0.95899 0.93262 0.91702 0.94264 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.03 71.24 0.71 -0.34 16 2 C 0.03 0.52 5.89 -19.81 -0.12 0.40 16 3 C -0.23 -2.81 9.71 22.08 0.21 -2.60 16 4 C 0.14 1.92 10.28 83.42 0.86 2.78 16 5 N -0.48 -10.46 2.07 -655.06 -1.36 -11.82 16 6 C 0.07 1.32 5.81 85.63 0.50 1.82 16 7 C 0.49 13.47 7.89 87.66 0.69 14.16 16 8 O -0.58 -21.99 16.43 -3.04 -0.05 -22.04 16 9 N -0.71 -17.78 5.56 -463.05 -2.57 -20.35 16 10 C 0.14 4.43 5.67 86.38 0.49 4.92 16 11 C -0.12 -4.19 5.65 30.59 0.17 -4.02 16 12 C 0.15 6.74 5.27 86.38 0.46 7.19 16 13 N -0.59 -27.57 2.36 -678.04 -1.60 -29.17 16 14 C -0.25 -12.67 8.23 84.03 0.69 -11.97 16 15 H 0.06 2.88 6.95 -2.91 -0.02 2.86 16 16 C -0.04 -2.01 4.94 84.86 0.42 -1.59 16 17 N -0.92 -52.72 11.52 21.65 0.25 -52.47 16 18 Si 0.95 43.15 29.60 68.60 2.03 45.18 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.15 5.98 3.36 44.99 0.15 6.13 16 23 C -0.14 -5.43 9.03 71.98 0.65 -4.78 16 24 C -0.14 -4.72 9.20 71.98 0.66 -4.06 16 25 C 0.50 14.80 7.40 84.82 0.63 15.43 16 26 O -0.61 -23.31 16.64 -5.52 -0.09 -23.40 16 27 C -0.29 -6.96 9.65 22.40 0.22 -6.74 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 31 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.20 1.08 8.04 -2.91 -0.02 1.06 16 33 H 0.18 1.09 8.01 -2.39 -0.02 1.07 16 34 H 0.13 2.38 7.39 -2.39 -0.02 2.36 16 35 H 0.42 7.44 8.47 -92.71 -0.79 6.66 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.02 0.92 7.90 -2.38 -0.02 0.90 16 41 H 0.06 3.13 5.56 -2.39 -0.01 3.12 16 42 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.06 2.06 7.78 -2.39 -0.02 2.04 16 44 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 45 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.04 1.42 7.06 -2.39 -0.02 1.40 16 50 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -81.64 412.40 4.14 -77.49 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.14 Total: 19.85 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 7.40 Total: 16.73 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -5.28 Total: -113.82 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.14 Total: -45.44 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -81.64 4.14 -77.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664543330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal (2) G-P(sol) polarization free energy of solvation -81.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds