Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29448 * 117.95862 * 2 1 4 4 C 1.50067 * 124.07218 * 179.53259 * 3 2 1 5 5 C 1.53021 * 110.14986 * 17.12953 * 4 3 2 6 6 C 1.52997 * 109.64269 * 190.88341 * 5 4 3 7 7 C 1.50698 * 109.64153 * 70.24852 * 5 4 3 8 8 O 1.21281 * 119.99989 * 5.52405 * 7 5 4 9 9 N 1.34773 * 119.99873 * 185.51842 * 7 5 4 10 10 C 1.46501 * 120.00342 * 180.02562 * 9 7 5 11 11 C 1.53934 * 113.73412 * 251.73474 * 10 9 7 12 12 N 1.47968 * 86.17642 * 221.91748 * 11 10 9 13 13 C 1.46898 * 110.99876 * 137.58294 * 12 11 10 14 14 C 1.50704 * 109.47250 * 90.64215 * 13 12 11 15 15 O 1.21291 * 120.00002 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00013 * 180.02562 * 14 13 12 17 17 C 1.37102 * 120.00023 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99761 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99845 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47277 * 90.00043 * 21 19 17 23 23 H 1.48504 * 109.47148 * 210.00206 * 21 19 17 24 24 H 1.48502 * 109.47449 * 329.99687 * 21 19 17 25 25 C 1.47953 * 90.76360 * 24.68621 * 12 11 10 26 26 C 1.53390 * 108.43698 * 310.56481 * 5 4 3 27 27 C 1.50059 * 117.96401 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46784 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46892 * 120.00176 * 1 2 3 30 30 H 1.09000 * 109.46819 * 240.00061 * 1 2 3 31 31 H 1.08003 * 117.96170 * 359.50539 * 3 2 1 32 32 H 1.09004 * 109.35509 * 256.92316 * 4 3 2 33 33 H 1.09004 * 109.35900 * 137.33980 * 4 3 2 34 34 H 1.08995 * 109.47474 * 59.99555 * 6 5 4 35 35 H 1.09002 * 109.47283 * 180.02562 * 6 5 4 36 36 H 1.09007 * 109.47036 * 299.99724 * 6 5 4 37 37 H 0.97002 * 119.99889 * 0.02562 * 9 7 5 38 38 H 1.09006 * 112.93209 * 23.43393 * 10 9 7 39 39 H 1.09001 * 113.75931 * 336.23122 * 11 10 9 40 40 H 1.08998 * 113.76494 * 107.60035 * 11 10 9 41 41 H 1.09005 * 109.46823 * 210.63332 * 13 12 11 42 42 H 1.09000 * 109.47266 * 330.63760 * 13 12 11 43 43 H 0.97005 * 119.99724 * 359.97438 * 16 14 13 44 44 H 0.97001 * 120.00257 * 180.02562 * 20 19 17 45 45 H 1.09006 * 113.76164 * 220.99072 * 25 12 11 46 46 H 1.09003 * 113.76030 * 89.62772 * 25 12 11 47 47 H 1.08996 * 109.64246 * 187.11945 * 26 5 4 48 48 H 1.09000 * 109.64301 * 307.75046 * 26 5 4 49 49 H 1.09004 * 109.35881 * 317.33770 * 27 2 1 50 50 H 1.08998 * 109.36262 * 76.92512 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 3.6061 1.3032 0.0101 5 6 4.2794 -0.0072 -0.4031 6 6 5.7826 0.0788 -0.1313 7 6 4.0391 -0.2599 -1.8692 8 8 3.4790 0.5771 -2.5449 9 7 4.4466 -1.4159 -2.4294 10 6 4.2135 -1.6614 -3.8548 11 6 3.1278 -2.7168 -4.1323 12 7 4.0333 -3.2275 -5.1853 13 6 4.0758 -4.6958 -5.1762 14 6 3.0149 -5.2348 -6.1010 15 8 2.2940 -4.4709 -6.7075 16 7 2.8665 -6.5656 -6.2533 17 6 1.9017 -7.0560 -7.0950 18 1 1.2604 -6.3757 -7.6357 19 6 1.7491 -8.4281 -7.2524 20 7 2.5298 -9.2558 -6.5949 21 14 0.4342 -9.0961 -8.3986 22 1 0.9998 -9.2532 -9.7626 23 1 -0.0324 -10.4153 -7.9013 24 1 -0.7104 -8.1510 -8.4432 25 6 5.2042 -2.6588 -4.4819 26 6 3.6705 -1.1471 0.4231 27 6 2.2107 -1.3254 -0.0006 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5088 2.0379 -0.0082 32 1 3.9333 1.5769 1.0132 33 1 3.8898 2.0910 -0.6878 34 1 5.9502 0.2523 0.9317 35 1 6.2594 -0.8557 -0.4270 36 1 6.2091 0.9015 -0.7053 37 1 4.8943 -2.0855 -1.8889 38 1 4.0923 -0.7432 -4.4297 39 1 2.9734 -3.4148 -3.3095 40 1 2.1976 -2.2992 -4.5176 41 1 5.0563 -5.0330 -5.5126 42 1 3.8942 -5.0584 -4.1645 43 1 3.4429 -7.1766 -5.7679 44 1 2.4235 -10.2136 -6.7051 45 1 5.9330 -2.1948 -5.1465 46 1 5.6570 -3.3397 -3.7613 47 1 4.2211 -2.0692 0.2371 48 1 3.7167 -0.8967 1.4830 49 1 1.7122 -1.9995 0.6960 50 1 2.1747 -1.7532 -1.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665232122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = -32.903371 kcal Electronic energy + Delta-G solvation = -29438.996620 eV Core-core repulsion = 25466.949183 eV Total energy + Delta-G solvation = -3972.047437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13466 -39.84147 -37.91804 -37.39726 -34.56519 -34.00374 -33.67925 -31.26218 -31.07318 -29.74735 -28.99454 -26.08857 -25.69195 -25.03792 -24.04533 -23.53465 -22.55579 -20.33220 -19.88912 -19.21444 -18.17252 -17.88300 -16.66347 -16.21601 -16.08326 -15.80710 -15.24874 -15.11102 -14.81465 -14.62274 -14.46335 -14.22544 -13.93800 -13.81290 -13.53693 -13.22777 -12.92056 -12.85588 -12.76785 -12.72732 -12.62583 -12.41325 -12.23273 -12.11690 -11.84465 -11.59966 -11.59284 -11.50366 -11.20455 -11.05197 -10.71829 -10.66132 -10.48416 -10.38228 -10.20061 -9.78976 -9.48491 -9.15470 -8.83033 -8.75295 -8.18251 -7.94456 -6.40357 -3.80903 2.15107 2.54433 2.96039 3.18941 3.27259 3.33520 3.90849 3.96055 4.16734 4.21539 4.31230 4.34655 4.49695 4.70454 4.77648 4.84431 4.94506 4.99747 5.05661 5.10684 5.18217 5.29170 5.29930 5.31594 5.35176 5.38001 5.42548 5.50626 5.54863 5.61158 5.62910 5.66567 5.68888 5.70540 5.77754 5.81080 5.84236 5.93554 5.94016 6.11856 6.25761 6.39102 6.50123 6.55259 6.89582 7.11580 7.36500 7.56705 8.07783 8.13150 8.63937 9.20283 9.56238 10.08962 10.77638 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.002316 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.282030 B =12085.944503 C =12790.664576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 C -0.145 4.145 4 C -0.065 4.065 5 C -0.082 4.082 6 C -0.140 4.140 7 C 0.529 3.471 8 O -0.528 6.528 9 N -0.722 5.722 10 C 0.119 3.881 11 C 0.000 4.000 12 N -0.444 5.444 13 C 0.013 3.987 14 C 0.446 3.554 15 O -0.573 6.573 16 N -0.568 5.568 17 C -0.297 4.297 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.009 4.009 26 C -0.106 4.106 27 C -0.089 4.089 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 15.909 19.738 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.130 4.130 3 C -0.163 4.163 4 C -0.102 4.102 5 C -0.085 4.085 6 C -0.197 4.197 7 C 0.315 3.685 8 O -0.403 6.403 9 N -0.373 5.373 10 C 0.014 3.986 11 C -0.130 4.130 12 N -0.167 5.167 13 C -0.119 4.119 14 C 0.231 3.769 15 O -0.456 6.456 16 N -0.205 5.205 17 C -0.426 4.426 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.126 4.126 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.232 0.768 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.525 16.981 18.119 25.676 hybrid contribution 0.060 -1.679 0.734 1.833 sum 6.585 15.302 18.854 25.159 Atomic orbital electron populations 1.20928 0.92593 1.02167 1.01932 1.20739 0.95783 0.94662 1.01796 1.21768 0.95673 0.97133 1.01720 1.20305 0.92732 0.95820 1.01363 1.20942 0.97306 0.98063 0.92235 1.21830 0.92564 1.02661 1.02661 1.20390 0.77543 0.81348 0.89241 1.90708 1.40919 1.44946 1.63754 1.46079 1.61297 1.19530 1.10435 1.23024 0.95623 0.99076 0.80911 1.24463 0.98770 0.96290 0.93456 1.68353 1.03119 1.07926 1.37271 1.22469 1.00562 0.89629 0.99286 1.19671 0.87369 0.83124 0.86734 1.90535 1.47665 1.57053 1.50367 1.41870 1.32853 1.04754 1.41033 1.19701 1.11465 0.90956 1.20522 0.87971 1.25242 0.98588 0.95838 0.98323 1.69610 1.39065 1.03533 1.42382 0.85867 0.80618 0.78072 0.79805 1.20399 1.20956 1.19430 1.24420 0.95753 0.96502 0.97181 1.21694 0.95682 0.97022 0.99953 1.20436 0.94503 0.95408 1.02297 0.92260 0.91709 0.92011 0.87928 0.90432 0.90058 0.91253 0.91970 0.91853 0.76795 0.85848 0.91265 0.88638 0.89323 0.92479 0.77597 0.91939 0.88582 0.91127 0.91127 0.90445 0.90667 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.98 36.01 0.36 -0.74 16 2 C -0.13 -1.30 5.65 -100.94 -0.57 -1.87 16 3 C -0.14 -1.44 8.66 -35.90 -0.31 -1.75 16 4 C -0.07 -0.56 4.54 -28.18 -0.13 -0.69 16 5 C -0.08 -0.65 0.65 -155.45 -0.10 -0.76 16 6 C -0.14 -0.80 8.45 37.16 0.31 -0.49 16 7 C 0.53 5.86 4.73 -10.99 -0.05 5.81 16 8 O -0.53 -8.09 14.90 5.56 0.08 -8.01 16 9 N -0.72 -6.94 5.15 -54.95 -0.28 -7.22 16 10 C 0.12 1.45 4.43 -69.64 -0.31 1.14 16 11 C 0.00 0.00 7.75 -2.76 -0.02 -0.02 16 12 N -0.44 -7.32 5.65 -239.90 -1.36 -8.68 16 13 C 0.01 0.22 5.28 -4.98 -0.03 0.20 16 14 C 0.45 10.73 7.83 -10.99 -0.09 10.64 16 15 O -0.57 -16.11 16.01 5.55 0.09 -16.03 16 16 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 17 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.01 -0.10 7.70 -2.77 -0.02 -0.12 16 26 C -0.11 -0.73 4.72 -26.51 -0.13 -0.85 16 27 C -0.09 -0.80 5.29 -28.17 -0.15 -0.95 16 28 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.98 7.56 -52.48 -0.40 0.58 16 32 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.30 7.95 -51.93 -0.41 -0.12 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 2.78 7.87 -40.82 -0.32 2.46 16 38 H 0.12 1.75 7.46 -51.93 -0.39 1.36 16 39 H 0.07 0.95 7.48 -51.93 -0.39 0.56 16 40 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.06 0.88 7.38 -51.93 -0.38 0.49 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 47 H 0.07 0.38 7.60 -51.93 -0.39 -0.01 16 48 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.80 7.36 -51.93 -0.38 0.42 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -34.47 400.22 -9.58 -44.05 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.32 Total: 10.65 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.47 Total: 1.50 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.97 Total: -54.46 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.17 Total: -24.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.47 -9.58 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665232122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.149 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds