Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40195 * 120.36297 * 2 1 4 4 C 1.35350 * 119.94805 * 179.76589 * 3 2 1 5 5 N 1.35765 * 120.69965 * 0.51373 * 4 3 2 6 6 C 1.46500 * 119.62664 * 179.75643 * 5 4 3 7 7 C 1.50697 * 109.47226 * 269.73296 * 6 5 4 8 8 O 1.21279 * 120.00380 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99939 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00290 * 184.94762 * 9 7 6 11 11 H 1.09000 * 109.46988 * 32.43155 * 10 9 7 12 12 C 1.52999 * 109.47432 * 152.43133 * 10 9 7 13 13 N 1.46502 * 109.47249 * 305.00134 * 12 10 9 14 14 C 1.36930 * 119.99918 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99753 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47400 * 90.00081 * 18 16 14 20 20 H 1.48499 * 109.47188 * 209.99707 * 18 16 14 21 21 H 1.48497 * 109.47331 * 330.00032 * 18 16 14 22 22 C 1.52999 * 109.47142 * 272.43663 * 10 9 7 23 23 C 1.52998 * 109.46969 * 174.17621 * 22 10 9 24 24 C 1.52993 * 109.47440 * 294.72673 * 23 22 10 25 25 C 1.53008 * 109.46734 * 174.72840 * 23 22 10 26 26 C 1.34659 * 120.74761 * 359.48550 * 5 4 3 27 27 O 1.22070 * 119.98179 * 180.27810 * 26 5 4 28 28 C 1.36395 * 120.37019 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47259 * 269.97221 * 1 2 3 30 30 H 1.08997 * 109.47502 * 29.97746 * 1 2 3 31 31 H 1.09004 * 109.47222 * 149.97766 * 1 2 3 32 32 H 1.07996 * 120.03065 * 0.04864 * 3 2 1 33 33 H 1.08001 * 119.65327 * 180.27626 * 4 3 2 34 34 H 1.08994 * 109.46836 * 149.72699 * 6 5 4 35 35 H 1.09006 * 109.46927 * 29.73047 * 6 5 4 36 36 H 0.97002 * 120.00251 * 4.93939 * 9 7 6 37 37 H 1.08999 * 109.46919 * 64.99920 * 12 10 9 38 38 H 1.09006 * 109.46878 * 185.00179 * 12 10 9 39 39 H 0.96998 * 119.99886 * 0.02562 * 13 12 10 40 40 H 0.96996 * 119.99792 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47198 * 54.17475 * 22 10 9 42 42 H 1.08997 * 109.46616 * 294.17486 * 22 10 9 43 43 H 1.09005 * 109.47272 * 54.73471 * 23 22 10 44 44 H 1.09000 * 109.47222 * 56.34146 * 24 23 22 45 45 H 1.08997 * 109.47704 * 176.34122 * 24 23 22 46 46 H 1.09003 * 109.47418 * 296.34364 * 24 23 22 47 47 H 1.09006 * 109.46709 * 180.02562 * 25 23 22 48 48 H 1.08994 * 109.47232 * 299.99772 * 25 23 22 49 49 H 1.09000 * 109.47136 * 60.00466 * 25 23 22 50 50 H 1.08002 * 120.34741 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1999 0.0048 5 7 4.2538 0.0275 -0.0008 6 6 5.7187 0.0444 -0.0009 7 6 6.2210 0.0503 -1.4217 8 8 5.4330 0.0409 -2.3435 9 7 7.5460 0.0651 -1.6679 10 6 8.0340 0.1802 -3.0445 11 1 7.3398 0.7863 -3.6265 12 6 9.4127 0.8436 -3.0430 13 7 9.3363 2.1272 -2.3410 14 6 10.4560 2.9048 -2.2123 15 1 11.3953 2.5721 -2.6285 16 6 10.3837 4.1208 -1.5466 17 7 9.2388 4.5266 -1.0397 18 14 11.9110 5.1820 -1.3716 19 1 12.0081 6.1050 -2.5309 20 1 11.8243 5.9712 -0.1166 21 1 13.1148 4.3136 -1.3280 22 6 8.1393 -1.2136 -3.6665 23 6 8.5086 -1.0853 -5.1457 24 6 7.3679 -0.3977 -5.8985 25 6 8.7426 -2.4776 -5.7355 26 6 3.6017 -1.1506 -0.0009 27 8 4.2313 -2.1964 -0.0009 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6821 2.1486 0.0008 33 1 4.1102 2.1345 0.0093 34 1 6.0922 -0.8413 0.5129 35 1 6.0718 0.9385 0.5130 36 1 8.1765 -0.0005 -0.9338 37 1 10.1275 0.1948 -2.5370 38 1 9.7369 1.0100 -4.0704 39 1 8.4927 2.4259 -1.9668 40 1 9.1882 5.3765 -0.5750 41 1 7.1817 -1.7259 -3.5743 42 1 8.9088 -1.7856 -3.1482 43 1 9.4179 -0.4921 -5.2431 44 1 7.1578 0.5672 -5.4371 45 1 7.6573 -0.2477 -6.9386 46 1 6.4758 -1.0226 -5.8561 47 1 9.0062 -2.3862 -6.7893 48 1 9.5553 -2.9675 -5.1993 49 1 7.8334 -3.0709 -5.6382 50 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667107705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = -43.191770 kcal Electronic energy + Delta-G solvation = -29588.224786 eV Core-core repulsion = 25615.731210 eV Total energy + Delta-G solvation = -3972.493575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.47686 -39.50633 -37.27927 -37.00751 -35.26098 -34.85035 -33.58541 -31.37009 -30.51614 -29.62284 -28.94918 -27.02844 -26.77425 -25.56713 -23.73134 -22.90961 -22.01905 -21.29879 -20.37216 -19.44014 -17.74197 -17.54166 -17.38209 -17.00464 -16.05692 -15.79151 -15.44712 -15.09023 -14.80816 -14.48749 -14.31111 -14.19328 -13.84116 -13.67355 -13.56218 -13.40696 -13.20148 -12.87167 -12.80254 -12.45825 -12.31873 -12.16786 -12.14739 -11.90575 -11.79492 -11.71712 -11.61578 -11.14152 -10.91620 -10.80937 -10.77926 -10.46313 -10.27261 -10.17159 -10.04488 -9.93288 -9.81263 -9.47841 -8.97505 -8.71506 -7.98411 -7.02854 -5.86290 -3.15144 0.79162 1.87127 2.47641 2.76641 3.35035 3.37880 3.43497 3.44234 3.73185 4.48545 4.50832 4.54779 4.70160 4.78614 4.92007 5.00592 5.06589 5.11623 5.13458 5.14930 5.29079 5.32391 5.39914 5.45727 5.48400 5.55629 5.62568 5.75504 5.76420 5.84803 5.89502 5.93114 6.01200 6.02030 6.11141 6.17219 6.20906 6.29931 6.34752 6.41197 6.47559 6.49865 6.59682 6.68633 6.89290 7.06428 7.61795 7.72597 8.05825 8.32193 8.39518 9.44421 9.99558 10.35394 11.36333 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008850 B = 0.003463 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.237605 B = 8084.442658 C =10436.607347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.017 3.983 3 C -0.235 4.235 4 C 0.152 3.848 5 N -0.477 5.477 6 C 0.067 3.933 7 C 0.505 3.495 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.138 3.862 11 H 0.091 0.909 12 C 0.144 3.856 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.120 4.120 23 C -0.096 4.096 24 C -0.147 4.147 25 C -0.144 4.144 26 C 0.522 3.478 27 O -0.556 6.556 28 C -0.253 4.253 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.405 0.595 37 H 0.024 0.976 38 H 0.037 0.963 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -9.398 1.224 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 C -0.259 4.259 4 C 0.025 3.975 5 N -0.187 5.187 6 C -0.058 4.058 7 C 0.289 3.711 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.033 3.967 11 H 0.109 0.891 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.159 4.159 23 C -0.115 4.115 24 C -0.205 4.205 25 C -0.202 4.202 26 C 0.325 3.675 27 O -0.439 6.439 28 C -0.275 4.275 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.775 -10.010 0.550 16.239 hybrid contribution 0.927 0.912 0.552 1.413 sum -11.848 -9.098 1.101 14.979 Atomic orbital electron populations 1.20916 0.90526 1.03475 1.02923 1.20189 0.96637 0.92729 0.89164 1.20503 0.92362 0.98856 1.14129 1.22019 0.93655 0.89749 0.92085 1.45027 1.07391 1.07208 1.59102 1.21861 0.79379 1.07548 0.97029 1.20502 0.83182 0.76616 0.90783 1.90720 1.55316 1.49442 1.45622 1.45860 1.06168 1.73536 1.10123 1.21374 0.97346 0.96211 0.81743 0.89107 1.21032 0.92297 0.88384 0.96687 1.42330 1.10664 1.17921 1.66624 1.19220 0.89265 0.99104 1.29565 0.91148 1.24722 0.96983 0.98048 1.01025 1.69651 1.23809 1.22283 1.42404 0.86191 0.82339 0.80491 0.77153 1.21713 1.21774 1.20764 1.21964 1.01889 0.96893 0.95176 1.21123 0.99361 0.96691 0.94316 1.21870 0.98031 1.01021 0.99532 1.21824 1.01314 0.96657 1.00376 1.17061 0.89312 0.82465 0.78674 1.90937 1.69213 1.30335 1.53458 1.21860 0.92311 0.99397 1.13928 0.90222 0.90781 0.90949 0.83759 0.81797 0.85514 0.85512 0.76036 0.95786 0.94569 0.78173 0.93530 0.91645 0.91854 0.90460 0.92095 0.93122 0.92959 0.92899 0.92855 0.92990 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.03 36.01 0.36 -0.48 16 2 C 0.02 0.17 5.89 -104.55 -0.62 -0.44 16 3 C -0.24 -2.32 9.71 -39.88 -0.39 -2.71 16 4 C 0.15 1.70 10.28 -16.84 -0.17 1.53 16 5 N -0.48 -6.52 2.07 -121.06 -0.25 -6.77 16 6 C 0.07 0.87 5.82 -5.20 -0.03 0.84 16 7 C 0.51 8.15 7.87 -10.99 -0.09 8.07 16 8 O -0.53 -10.44 16.10 5.56 0.09 -10.35 16 9 N -0.71 -10.93 4.49 -53.81 -0.24 -11.17 16 10 C 0.14 2.27 2.08 -67.93 -0.14 2.13 16 11 H 0.09 1.70 5.68 -51.93 -0.30 1.40 16 12 C 0.14 2.70 5.49 -4.04 -0.02 2.67 16 13 N -0.73 -17.21 5.43 -59.91 -0.33 -17.54 16 14 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 18 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -1.74 4.45 -26.73 -0.12 -1.85 16 23 C -0.10 -1.26 2.80 -90.62 -0.25 -1.52 16 24 C -0.15 -2.00 9.04 37.15 0.34 -1.66 16 25 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 26 C 0.52 8.26 7.40 -15.45 -0.11 8.15 16 27 O -0.56 -10.63 16.64 4.85 0.08 -10.55 16 28 C -0.25 -3.28 9.65 -39.38 -0.38 -3.66 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.46 8.03 -52.49 -0.42 1.04 16 34 H 0.13 1.56 7.39 -51.93 -0.38 1.17 16 35 H 0.13 1.28 8.01 -51.93 -0.42 0.87 16 36 H 0.40 5.73 8.63 -40.82 -0.35 5.38 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.04 0.69 6.72 -51.93 -0.35 0.34 16 39 H 0.38 9.56 7.33 -40.82 -0.30 9.26 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.05 6.47 -51.93 -0.34 0.71 16 44 H 0.06 0.92 6.30 -51.93 -0.33 0.60 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -34.64 410.16 -8.51 -43.15 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.22 Total: 13.61 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.53 Total: 2.81 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.09 Total: -61.42 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.64 -8.51 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667107705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.041 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds