Wall clock time and date at job start Tue Mar 31 2020 19:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40195 * 120.36297 * 2 1 4 4 C 1.35350 * 119.94805 * 179.76589 * 3 2 1 5 5 N 1.35765 * 120.69965 * 0.51373 * 4 3 2 6 6 C 1.46500 * 119.62664 * 179.75643 * 5 4 3 7 7 C 1.50697 * 109.47226 * 269.73296 * 6 5 4 8 8 O 1.21279 * 120.00380 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99939 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00290 * 184.94762 * 9 7 6 11 11 H 1.09000 * 109.46988 * 32.43155 * 10 9 7 12 12 C 1.52999 * 109.47432 * 152.43133 * 10 9 7 13 13 N 1.46502 * 109.47249 * 305.00134 * 12 10 9 14 14 C 1.36930 * 119.99918 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99753 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47400 * 90.00081 * 18 16 14 20 20 H 1.48499 * 109.47188 * 209.99707 * 18 16 14 21 21 H 1.48497 * 109.47331 * 330.00032 * 18 16 14 22 22 C 1.52999 * 109.47142 * 272.43663 * 10 9 7 23 23 C 1.52998 * 109.46969 * 174.17621 * 22 10 9 24 24 C 1.52993 * 109.47440 * 294.72673 * 23 22 10 25 25 C 1.53008 * 109.46734 * 174.72840 * 23 22 10 26 26 C 1.34659 * 120.74761 * 359.48550 * 5 4 3 27 27 O 1.22070 * 119.98179 * 180.27810 * 26 5 4 28 28 C 1.36395 * 120.37019 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47259 * 269.97221 * 1 2 3 30 30 H 1.08997 * 109.47502 * 29.97746 * 1 2 3 31 31 H 1.09004 * 109.47222 * 149.97766 * 1 2 3 32 32 H 1.07996 * 120.03065 * 0.04864 * 3 2 1 33 33 H 1.08001 * 119.65327 * 180.27626 * 4 3 2 34 34 H 1.08994 * 109.46836 * 149.72699 * 6 5 4 35 35 H 1.09006 * 109.46927 * 29.73047 * 6 5 4 36 36 H 0.97002 * 120.00251 * 4.93939 * 9 7 6 37 37 H 1.08999 * 109.46919 * 64.99920 * 12 10 9 38 38 H 1.09006 * 109.46878 * 185.00179 * 12 10 9 39 39 H 0.96998 * 119.99886 * 0.02562 * 13 12 10 40 40 H 0.96996 * 119.99792 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47198 * 54.17475 * 22 10 9 42 42 H 1.08997 * 109.46616 * 294.17486 * 22 10 9 43 43 H 1.09005 * 109.47272 * 54.73471 * 23 22 10 44 44 H 1.09000 * 109.47222 * 56.34146 * 24 23 22 45 45 H 1.08997 * 109.47704 * 176.34122 * 24 23 22 46 46 H 1.09003 * 109.47418 * 296.34364 * 24 23 22 47 47 H 1.09006 * 109.46709 * 180.02562 * 25 23 22 48 48 H 1.08994 * 109.47232 * 299.99772 * 25 23 22 49 49 H 1.09000 * 109.47136 * 60.00466 * 25 23 22 50 50 H 1.08002 * 120.34741 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1999 0.0048 5 7 4.2538 0.0275 -0.0008 6 6 5.7187 0.0444 -0.0009 7 6 6.2210 0.0503 -1.4217 8 8 5.4330 0.0409 -2.3435 9 7 7.5460 0.0651 -1.6679 10 6 8.0340 0.1802 -3.0445 11 1 7.3398 0.7863 -3.6265 12 6 9.4127 0.8436 -3.0430 13 7 9.3363 2.1272 -2.3410 14 6 10.4560 2.9048 -2.2123 15 1 11.3953 2.5721 -2.6285 16 6 10.3837 4.1208 -1.5466 17 7 9.2388 4.5266 -1.0397 18 14 11.9110 5.1820 -1.3716 19 1 12.0081 6.1050 -2.5309 20 1 11.8243 5.9712 -0.1166 21 1 13.1148 4.3136 -1.3280 22 6 8.1393 -1.2136 -3.6665 23 6 8.5086 -1.0853 -5.1457 24 6 7.3679 -0.3977 -5.8985 25 6 8.7426 -2.4776 -5.7355 26 6 3.6017 -1.1506 -0.0009 27 8 4.2313 -2.1964 -0.0009 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6821 2.1486 0.0008 33 1 4.1102 2.1345 0.0093 34 1 6.0922 -0.8413 0.5129 35 1 6.0718 0.9385 0.5130 36 1 8.1765 -0.0005 -0.9338 37 1 10.1275 0.1948 -2.5370 38 1 9.7369 1.0100 -4.0704 39 1 8.4927 2.4259 -1.9668 40 1 9.1882 5.3765 -0.5750 41 1 7.1817 -1.7259 -3.5743 42 1 8.9088 -1.7856 -3.1482 43 1 9.4179 -0.4921 -5.2431 44 1 7.1578 0.5672 -5.4371 45 1 7.6573 -0.2477 -6.9386 46 1 6.4758 -1.0226 -5.8561 47 1 9.0062 -2.3862 -6.7893 48 1 9.5553 -2.9675 -5.1993 49 1 7.8334 -3.0709 -5.6382 50 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667107705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:10 Heat of formation + Delta-G solvation = -65.213749 kcal Electronic energy + Delta-G solvation = -29589.179730 eV Core-core repulsion = 25615.731210 eV Total energy + Delta-G solvation = -3973.448520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52687 -40.80466 -38.57765 -38.09498 -36.37835 -36.20579 -35.16875 -33.05354 -31.61601 -30.77857 -30.06707 -28.06479 -27.72847 -27.22373 -24.66367 -24.60064 -23.27358 -22.40922 -21.63572 -20.65455 -19.29937 -18.60382 -18.52729 -18.49438 -17.13972 -16.98607 -16.87554 -16.30803 -16.21086 -15.94151 -15.33910 -15.23232 -15.17647 -15.04433 -14.83182 -14.57639 -14.26083 -14.15213 -13.84163 -13.64991 -13.42680 -13.33846 -13.19595 -13.02461 -12.95654 -12.85292 -12.76983 -12.65620 -12.46272 -12.25242 -12.03646 -11.94479 -11.77241 -11.60294 -11.41889 -11.23641 -11.09078 -10.93256 -10.55567 -10.05422 -9.00241 -8.98156 -7.93073 -5.21337 -0.12710 0.90447 1.44869 1.49169 1.50243 1.51280 1.58920 2.17930 2.57222 2.69475 3.41376 3.56569 3.63327 3.70579 3.73965 3.85368 3.90800 4.02442 4.08932 4.14532 4.15945 4.16885 4.32429 4.38532 4.38808 4.55081 4.72451 4.76815 4.78316 4.84503 4.87363 4.89953 4.91909 4.96841 5.00740 5.07792 5.10122 5.11950 5.23522 5.30215 5.44174 5.45590 5.47657 5.53792 5.54882 5.64686 6.05911 6.28393 6.45088 6.95456 7.12233 7.36547 8.07882 8.33802 9.29807 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008850 B = 0.003463 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.237605 B = 8084.442658 C =10436.607347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.033 3.967 3 C -0.227 4.227 4 C 0.134 3.866 5 N -0.480 5.480 6 C 0.071 3.929 7 C 0.502 3.498 8 O -0.573 6.573 9 N -0.702 5.702 10 C 0.148 3.852 11 H 0.067 0.933 12 C 0.149 3.851 13 N -0.739 5.739 14 C -0.243 4.243 15 H 0.075 0.925 16 C -0.068 4.068 17 N -0.963 5.963 18 Si 0.968 3.032 19 H -0.292 1.292 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.144 4.144 25 C -0.140 4.140 26 C 0.503 3.497 27 O -0.610 6.610 28 C -0.287 4.287 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.412 0.588 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 -8.788 1.250 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.029 3.971 3 C -0.249 4.249 4 C 0.008 3.992 5 N -0.189 5.189 6 C -0.054 4.054 7 C 0.288 3.712 8 O -0.452 6.452 9 N -0.353 5.353 10 C 0.043 3.957 11 H 0.085 0.915 12 C 0.022 3.978 13 N -0.383 5.383 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.798 3.202 19 H -0.220 1.220 20 H -0.222 1.222 21 H -0.196 1.196 22 C -0.148 4.148 23 C -0.114 4.114 24 C -0.202 4.202 25 C -0.197 4.197 26 C 0.309 3.691 27 O -0.498 6.498 28 C -0.308 4.308 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.197 0.803 33 H 0.204 0.796 34 H 0.149 0.851 35 H 0.175 0.825 36 H 0.248 0.752 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.869 -9.401 0.571 15.947 hybrid contribution 0.888 0.769 0.499 1.276 sum -11.981 -8.632 1.069 14.805 Atomic orbital electron populations 1.21032 0.87616 1.04623 1.04439 1.20636 0.98671 0.91836 0.85962 1.21033 0.92033 1.00108 1.11773 1.22591 0.94655 0.89622 0.92337 1.45048 1.07621 1.07536 1.58684 1.21938 0.79442 1.09132 0.94900 1.21045 0.82880 0.75521 0.91784 1.90693 1.56172 1.51251 1.47107 1.45832 1.06369 1.73073 1.10022 1.21165 0.95457 0.96871 0.82210 0.91503 1.21106 0.93746 0.86728 0.96214 1.42453 1.09596 1.19246 1.66962 1.19575 0.90142 0.99313 1.28455 0.90661 1.25441 0.99507 0.99478 1.01645 1.69784 1.25503 1.22489 1.43587 0.85225 0.79731 0.78794 0.76471 1.21965 1.22228 1.19578 1.21869 1.01405 0.95283 0.96284 1.21133 0.98928 0.98005 0.93325 1.21838 0.98145 0.99765 1.00418 1.21784 1.01593 0.95139 1.01205 1.17553 0.90408 0.82440 0.78726 1.90882 1.70238 1.31982 1.56658 1.21909 0.91290 1.00857 1.16760 0.88255 0.88913 0.90553 0.80256 0.79601 0.85137 0.82513 0.75157 0.94532 0.94319 0.79204 0.94044 0.93331 0.90521 0.90480 0.94282 0.91459 0.93498 0.91536 0.91926 0.93208 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.03 71.24 0.71 -0.60 16 2 C 0.03 0.63 5.89 -19.82 -0.12 0.51 16 3 C -0.23 -3.96 9.71 22.08 0.21 -3.74 16 4 C 0.13 2.83 10.28 83.42 0.86 3.69 16 5 N -0.48 -13.23 2.07 -655.06 -1.36 -14.59 16 6 C 0.07 1.85 5.82 85.63 0.50 2.35 16 7 C 0.50 16.61 7.87 87.66 0.69 17.30 16 8 O -0.57 -23.21 16.10 -3.02 -0.05 -23.26 16 9 N -0.70 -21.98 4.49 -442.54 -1.99 -23.97 16 10 C 0.15 4.91 2.08 44.99 0.09 5.01 16 11 H 0.07 2.59 5.68 -2.39 -0.01 2.58 16 12 C 0.15 5.49 5.49 86.38 0.47 5.96 16 13 N -0.74 -34.65 5.43 -343.45 -1.87 -36.52 16 14 C -0.24 -12.71 9.99 84.03 0.84 -11.87 16 15 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 16 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.96 -55.12 13.06 21.65 0.28 -54.84 16 18 Si 0.97 44.00 29.55 68.60 2.03 46.02 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C -0.11 -3.14 4.45 30.59 0.14 -3.00 16 23 C -0.09 -2.43 2.80 -10.79 -0.03 -2.46 16 24 C -0.14 -3.92 9.04 71.98 0.65 -3.27 16 25 C -0.14 -2.94 9.19 71.98 0.66 -2.28 16 26 C 0.50 16.59 7.40 84.82 0.63 17.22 16 27 O -0.61 -24.77 16.64 -5.54 -0.09 -24.86 16 28 C -0.29 -7.56 9.65 22.40 0.22 -7.35 16 29 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.09 0.71 8.10 -2.39 -0.02 0.70 16 31 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 32 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.19 2.99 8.03 -2.91 -0.02 2.96 16 34 H 0.13 3.31 7.39 -2.39 -0.02 3.29 16 35 H 0.16 3.05 8.01 -2.38 -0.02 3.03 16 36 H 0.41 11.61 8.63 -92.71 -0.80 10.81 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.44 6.72 -2.38 -0.02 1.43 16 39 H 0.38 18.82 7.33 -92.71 -0.68 18.14 16 40 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 1.99 6.47 -2.38 -0.02 1.97 16 44 H 0.04 1.21 6.30 -2.39 -0.02 1.20 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -76.48 410.16 3.42 -73.06 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.53 Total: 44.70 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 7.00 Total: 14.26 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -4.93 Total: -129.92 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.14 Total: -48.13 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -76.48 3.42 -73.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667107705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.846 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds