Wall clock time and date at job start Tue Mar 31 2020 18:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51267 * 120.85628 * 2 1 4 4 C 1.53222 * 108.53923 * 231.37352 * 3 2 1 5 5 C 1.52961 * 109.40598 * 305.36905 * 4 3 2 6 6 C 1.50695 * 109.41448 * 183.70272 * 5 4 3 7 7 O 1.21282 * 120.00383 * 359.85870 * 6 5 4 8 8 N 1.34779 * 120.00024 * 179.85644 * 6 5 4 9 9 C 1.46496 * 120.00092 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.78472 * 284.18945 * 10 9 8 12 12 C 1.53509 * 113.47430 * 153.38126 * 10 9 8 13 13 C 1.53517 * 83.57536 * 219.20766 * 12 10 9 14 14 N 1.47473 * 113.47472 * 55.00003 * 10 9 8 15 15 C 1.46895 * 111.00172 * 253.46865 * 14 10 9 16 16 C 1.50696 * 109.47426 * 198.37844 * 15 14 10 17 17 O 1.21296 * 120.00268 * 353.84405 * 16 15 14 18 18 N 1.34777 * 120.00158 * 173.84568 * 16 15 14 19 19 C 1.37097 * 120.00048 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00484 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99941 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99983 * 359.72601 * 21 19 18 23 23 Si 1.86802 * 120.00003 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47235 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.47052 * 210.00205 * 23 21 19 26 26 H 1.48498 * 109.47106 * 330.00177 * 23 21 19 27 27 C 1.52961 * 109.75834 * 63.63515 * 5 4 3 28 28 C 1.51273 * 120.84700 * 180.02562 * 2 1 3 29 29 H 1.08003 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00248 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.62843 * 111.65692 * 3 2 1 32 32 H 1.09001 * 109.62041 * 351.08898 * 3 2 1 33 33 H 1.09002 * 109.48505 * 185.39400 * 4 3 2 34 34 H 1.09000 * 109.48417 * 65.35138 * 4 3 2 35 35 H 1.09000 * 109.41536 * 303.56723 * 5 4 3 36 36 H 0.97004 * 119.99846 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47442 * 60.00402 * 9 8 6 38 38 H 1.09000 * 109.47369 * 300.00065 * 9 8 6 39 39 H 1.09002 * 114.17215 * 105.55870 * 12 10 9 40 40 H 1.09003 * 114.34777 * 332.86478 * 12 10 9 41 41 H 1.08995 * 113.47564 * 271.26088 * 13 12 10 42 42 H 1.08998 * 113.52651 * 140.80095 * 13 12 10 43 43 H 1.09003 * 109.47044 * 78.37460 * 15 14 10 44 44 H 1.09004 * 109.46884 * 318.37771 * 15 14 10 45 45 H 0.97002 * 119.99888 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99709 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.48745 * 56.34235 * 27 5 4 48 48 H 1.08994 * 109.48567 * 176.39065 * 27 5 4 49 49 H 1.08998 * 109.62482 * 248.34227 * 28 2 1 50 50 H 1.08997 * 109.62629 * 8.72149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1141 1.2517 -1.1349 5 6 3.9804 0.0000 -0.9844 6 6 5.0496 0.0002 -2.0463 7 8 5.1103 0.9103 -2.8457 8 7 5.9386 -1.0110 -2.1077 9 6 6.9784 -1.0105 -3.1397 10 6 7.8475 -2.2607 -2.9885 11 1 8.5460 -2.1909 -2.1547 12 6 8.5046 -2.7110 -4.3008 13 6 8.1785 -4.1179 -3.7804 14 7 7.0765 -3.5177 -3.0055 15 6 6.9973 -4.1049 -1.6613 16 6 6.6195 -5.5597 -1.7701 17 8 6.3256 -6.0311 -2.8484 18 7 6.6082 -6.3372 -0.6692 19 6 6.2650 -7.6608 -0.7683 20 1 6.0033 -8.0805 -1.7284 21 6 6.2539 -8.4624 0.3666 22 7 6.5775 -7.9531 1.5340 23 14 5.7856 -10.2658 0.2318 24 1 7.0035 -11.0756 -0.0252 25 1 5.1546 -10.7096 1.5008 26 1 4.8262 -10.4457 -0.8874 27 6 3.1130 -1.2506 -1.1366 28 6 2.0856 -1.2987 -0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.5988 1.4186 0.9542 32 1 1.4027 2.1330 -0.1590 33 1 3.7461 2.1387 -1.0898 34 1 2.5964 1.2223 -2.0936 35 1 4.4477 -0.0009 0.0004 36 1 5.8899 -1.7391 -1.4686 37 1 7.5987 -0.1210 -3.0301 38 1 6.5124 -1.0094 -4.1251 39 1 9.5710 -2.4942 -4.3633 40 1 7.9547 -2.4287 -5.1987 41 1 8.9654 -4.5438 -3.1578 42 1 7.8400 -4.8021 -4.5585 43 1 6.2435 -3.5764 -1.0778 44 1 7.9658 -4.0169 -1.1688 45 1 6.8436 -5.9604 0.1931 46 1 6.5694 -8.5127 2.3263 47 1 2.5952 -1.2195 -2.0953 48 1 3.7439 -2.1382 -1.0927 49 1 2.5986 -1.4192 0.9536 50 1 1.4021 -2.1333 -0.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670687325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:21 Heat of formation + Delta-G solvation = -36.314342 kcal Electronic energy + Delta-G solvation = -29419.693988 eV Core-core repulsion = 25447.498640 eV Total energy + Delta-G solvation = -3972.195348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.64617 -39.90150 -37.97801 -37.70085 -34.57782 -33.97595 -33.02660 -31.45763 -31.23623 -30.68576 -28.62493 -26.58206 -25.86952 -23.79942 -23.33215 -23.02239 -21.86381 -20.22207 -19.62511 -19.31292 -18.57885 -17.97644 -17.37933 -16.30785 -16.11571 -15.71027 -15.26027 -15.06871 -15.02614 -14.75105 -14.46829 -14.19670 -13.96985 -13.88424 -13.70382 -13.64496 -13.43355 -12.81613 -12.61966 -12.49711 -12.32630 -11.97471 -11.79407 -11.73131 -11.56011 -11.54221 -11.40447 -11.22676 -11.12260 -10.84881 -10.76146 -10.52713 -10.44053 -10.34631 -10.28000 -9.72880 -9.56794 -9.18565 -9.03132 -8.77759 -8.35498 -8.03761 -6.48684 -3.89631 2.08630 2.64006 3.12151 3.14292 3.22403 3.28092 3.80269 3.94703 4.16501 4.38797 4.42333 4.52736 4.65535 4.74615 4.82610 4.90406 4.90802 4.98405 5.09936 5.15342 5.17210 5.23201 5.34829 5.38612 5.38814 5.47075 5.54313 5.57393 5.61149 5.70009 5.71897 5.77803 5.81161 5.85884 5.90471 5.97703 5.99092 6.05390 6.13119 6.16861 6.23672 6.41702 6.48841 6.55907 6.70996 7.14711 7.48737 7.49428 7.98131 8.22008 8.53251 9.10898 9.45709 9.97040 10.68840 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.003237 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.205299 B = 8646.661878 C =11267.560415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.094 4.094 5 C -0.107 4.107 6 C 0.517 3.483 7 O -0.547 6.547 8 N -0.721 5.721 9 C 0.141 3.859 10 C 0.004 3.996 11 H 0.082 0.918 12 C -0.137 4.137 13 C 0.016 3.984 14 N -0.437 5.437 15 C 0.008 3.992 16 C 0.441 3.559 17 O -0.576 6.576 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.108 4.108 28 C -0.086 4.086 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.401 0.599 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.391 0.609 46 H 0.272 0.728 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 17.133 -0.952 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.132 4.132 5 C -0.128 4.128 6 C 0.304 3.696 7 O -0.425 6.425 8 N -0.372 5.372 9 C 0.017 3.983 10 C -0.107 4.107 11 H 0.100 0.900 12 C -0.175 4.175 13 C -0.113 4.113 14 N -0.159 5.159 15 C -0.125 4.125 16 C 0.226 3.774 17 O -0.460 6.460 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.146 4.146 28 C -0.123 4.123 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.940 17.324 -2.293 17.721 hybrid contribution 0.688 -1.213 1.509 2.055 sum -2.253 16.112 -0.783 16.287 Atomic orbital electron populations 1.23629 0.95019 1.01787 1.03179 1.22009 0.95129 0.95869 0.98948 1.20845 0.97573 0.94869 0.99050 1.21334 0.96475 0.96417 0.98940 1.21342 0.95019 0.97900 0.98553 1.20644 0.81949 0.81534 0.85520 1.90674 1.73508 1.36202 1.42077 1.45999 1.31720 1.25092 1.34439 1.21307 0.88696 0.96168 0.92147 1.23841 0.95167 0.92387 0.99267 0.90002 1.23208 1.00605 0.96933 0.96787 1.23539 0.92700 0.96353 0.98694 1.68899 1.34322 1.01747 1.10980 1.22550 1.00962 0.96586 0.92359 1.19609 0.85417 0.86879 0.85493 1.90543 1.53348 1.74586 1.27532 1.41870 1.59843 1.09801 1.08368 1.19693 1.42765 0.84430 0.96051 0.87919 1.25256 0.97326 1.00559 0.94662 1.69606 1.48393 1.37284 0.98919 0.85867 0.78831 0.81913 0.77766 1.20396 1.20863 1.19363 1.21545 0.97243 0.96160 0.99624 1.20823 0.97612 0.94935 0.98920 0.88612 0.88426 0.90845 0.91069 0.90950 0.91118 0.88534 0.76362 0.91395 0.90856 0.90563 0.88679 0.91595 0.88795 0.89761 0.92637 0.77543 0.91819 0.91046 0.90763 0.90510 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 13.99 29.02 0.41 -1.37 16 2 C -0.12 -1.12 5.35 -100.51 -0.54 -1.66 16 3 C -0.09 -0.74 6.03 -27.49 -0.17 -0.90 16 4 C -0.09 -0.94 4.53 -26.64 -0.12 -1.06 16 5 C -0.11 -1.10 2.42 -91.81 -0.22 -1.32 16 6 C 0.52 6.66 7.15 -10.99 -0.08 6.58 16 7 O -0.55 -8.80 15.94 5.56 0.09 -8.71 16 8 N -0.72 -8.59 5.33 -60.29 -0.32 -8.91 16 9 C 0.14 1.65 5.82 -4.04 -0.02 1.63 16 10 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 11 H 0.08 0.85 7.63 -51.93 -0.40 0.45 16 12 C -0.14 -1.49 8.00 -26.20 -0.21 -1.70 16 13 C 0.02 0.23 6.34 -7.54 -0.05 0.19 16 14 N -0.44 -6.66 5.74 -237.95 -1.37 -8.02 16 15 C 0.01 0.12 5.09 -4.98 -0.03 0.10 16 16 C 0.44 9.88 7.46 -10.99 -0.08 9.80 16 17 O -0.58 -15.05 14.98 5.54 0.08 -14.97 16 18 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 19 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 23 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.11 -1.13 5.14 -26.62 -0.14 -1.27 16 28 C -0.09 -0.83 6.04 -27.48 -0.17 -0.99 16 29 H 0.10 0.75 7.92 -52.48 -0.42 0.34 16 30 H 0.10 0.84 7.92 -52.49 -0.42 0.42 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 33 H 0.07 0.74 8.00 -51.93 -0.42 0.33 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 4.50 5.69 -40.82 -0.23 4.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.09 1.58 7.97 -51.93 -0.41 1.16 16 43 H 0.08 1.21 6.56 -51.93 -0.34 0.87 16 44 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 45 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 46 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -31.92 399.48 -9.99 -41.90 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.25 Total: 13.77 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.88 Total: 0.09 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.02 Total: -53.64 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.92 -9.99 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670687325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.586 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds